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                             179 gevonden resultaten
nr titel auteur tijdschrift jaar jaarg. afl. pagina('s) type
1 A circuit model of the temporal pattern generator of Caenorhabditis egg-laying behavior Zhang, Mi
2010
4 1 artikel
2 A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1 Sigurdsson, Martin I
2010
4 1 artikel
3 A formal model for analyzing drug combination effects and its application in TNF-α-induced NFκB pathway Yan, Han
2010
4 1 artikel
4 A general co-expression network-based approach to gene expression analysis: comparison and applications Ruan, Jianhua
2010
4 1 artikel
5 A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder McEachin, Richard C
2010
4 1 artikel
6 A multilevel data integration resource for breast cancer study Mosca, Ettore
2010
4 1 artikel
7 A multi-level study of recombinant Pichia pastoris in different oxygen conditions Baumann, Kristin
2010
4 1 artikel
8 Analysis of Alzheimer's disease severity across brain regions by topological analysis of gene co-expression networks Ray, Monika
2010
4 1 artikel
9 An information-flow-based model with dissipation, saturation and direction for active pathway inference Ren, Xianwen
2010
4 1 artikel
10 An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis Zhang, Yi
2010
4 1 artikel
11 An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer Chari, Raj
2010
4 1 artikel
12 An iterative identification procedure for dynamic modeling of biochemical networks Balsa-Canto, Eva
2010
4 1 artikel
13 A Novel microRNA and transcription factor mediated regulatory network in schizophrenia Guo, An-Yuan
2010
4 1 artikel
14 Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis Huthmacher, Carola
2010
4 1 artikel
15 A plausible mechanism for auxin patterning along the developing root Mironova, Victoria V
2010
4 1 artikel
16 A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis Streif, Stefan
2010
4 1 artikel
17 A quantitative approach to study indirect effects among disease proteins in the human protein interaction network Nguyen, Thanh-Phuong
2010
4 1 artikel
18 A systematic investigation of Escherichia coli central carbon metabolism in response to superoxide stress Rui, Bin
2010
4 1 artikel
19 Automated characterization of cell shape changes during amoeboid motility by skeletonization Xiong, Yuan
2010
4 1 artikel
20 Avoiding transcription factor competition at promoter level increases the chances of obtaining oscillation Munteanu, Andreea
2010
4 1 artikel
21 A yeast's eye view of mammalian reproduction: cross-species gene co-expression in meiotic prophase Li, Yunfei
2010
4 1 artikel
22 Bio-informatics analysis of a gene co-expression module in adipose tissue containing the diet-responsive gene Nnat Li, Xinzhong
2010
4 1 artikel
23 BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models Li, Chen
2010
4 1 artikel
24 Blood flow controls coagulation onset via the positive feedback of factor VII activation by factor Xa Shibeko, Alexey M
2010
4 1 artikel
25 Bridging time scales in cellular decision making with a stochastic bistable switch Waldherr, Steffen
2010
4 1 artikel
26 Brownian diffusion of AMPA receptors is sufficient to explain fast onset of LTP Tolle, Dominic P
2010
4 1 artikel
27 Building and analyzing protein interactome networks by cross-species comparisons Wiles, Amy M
2010
4 1 artikel
28 Catabolic efficiency of aerobic glycolysis: The Warburg effect revisited Vazquez, Alexei
2010
4 1 artikel
29 Cloud computing and validation of expandable in silico livers Ropella, Glen EP
2010
4 1 artikel
30 Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression Shi, Zhiao
2010
4 1 artikel
31 Combinatorial regulation of transcription factors and microRNAs Su, Naifang
2010
4 1 artikel
32 Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems Dabrowski, Michal
2010
4 1 artikel
33 Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test Wu, Chao
2010
4 1 artikel
34 Confidence from uncertainty - A multi-target drug screening method from robust control theory Luni, Camilla
2010
4 1 artikel
35 Constraint-based modeling analysis of the metabolism of two Pelobacter species Sun, Jun
2010
4 1 artikel
36 Construction of a large scale integrated map of macrophage pathogen recognition and effector systems Raza, Sobia
2010
4 1 artikel
37 Continuous-time modeling of cell fate determination in Arabidopsis flowers van Mourik, Simon
2010
4 1 artikel
38 Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network Azuaje, Francisco
2010
4 1 artikel
39 Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis Allen, Elizabeth
2010
4 1 artikel
40 Curating the innate immunity interactome Lynn, David J
2010
4 1 artikel
41 DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results Gizzatkulov, Nail M
2010
4 1 artikel
42 Deciphering chemotaxis pathways using cross species comparisons Hamer, Rebecca
2010
4 1 artikel
43 Deducing corticotropin-releasing hormone receptor type 1 signaling networks from gene expression data by usage of genetic algorithms and graphical Gaussian models Trümbach, Dietrich
2010
4 1 artikel
44 Defining the antigen receptor-dependent regulatory network that induces arrest of cycling immature B-lymphocytes Jamal, Mohammad Sarwar
2010
4 1 artikel
45 Determining and interpreting correlations in lipidomic networks found in glioblastoma cells Görke, Robert
2010
4 1 artikel
46 Development and analysis of an in vivo-compatible metabolic network of Mycobacterium tuberculosis Fang, Xin
2010
4 1 artikel
47 Diffusion is capable of translating anisotropic apoptosis initiation into a homogeneous execution of cell death Huber, Heinrich J
2010
4 1 artikel
48 Diffusive coupling can discriminate between similar reaction mechanisms in an allosteric enzyme system Straube, Ronny
2010
4 1 artikel
49 Discriminating between rival biochemical network models: three approaches to optimal experiment design Mélykúti, Bence
2010
4 1 artikel
50 Dynamical modeling of microRNA action on the protein translation process Zinovyev, Andrei
2010
4 1 artikel
51 Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy Lin, Chen-Ching
2010
4 1 artikel
52 Dynamics and Control of the Central Carbon Metabolism in Hepatoma Cells Maier, Klaus
2010
4 1 artikel
53 Edelfosine-induced metabolic changes in cancer cells that precede the overproduction of reactive oxygen species and apoptosis Selivanov, Vitaly A
2010
4 1 artikel
54 Evaluating diabetes and hypertension disease causality using mouse phenotypes Yu, Hong
2010
4 1 artikel
55 Evolution of metabolic network organization Mazurie, Aurélien
2010
4 1 artikel
56 Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria de Jong, Hidde
2010
4 1 artikel
57 ExprEssence - Revealing the essence of differential experimental data in the context of an interaction/regulation net-work Warsow, Gregor
2010
4 1 artikel
58 Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk Shoemaker, Jason E
2010
4 1 artikel
59 Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces Cerevisiae Mirzarezaee, Mitra
2010
4 1 artikel
60 Functional network of glycan-related molecules: Glyco-Net in Glycoconjugate Data Bank Hashimoto, Ryo
2010
4 1 artikel
61 Further developments towards a genome-scale metabolic model of yeast Dobson, Paul D
2010
4 1 artikel
62 Gene expression model (in)validation by Fourier analysis Konopka, Tomasz
2010
4 1 artikel
63 Gene set analysis exploiting the topology of a pathway Massa, Maria Sofia
2010
4 1 artikel
64 Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production Roberts, Seth B
2010
4 1 artikel
65 Genomic distance entrained clustering and regression modelling highlights interacting genomic regions contributing to proliferation in breast cancer Dexter, Tim J
2010
4 1 artikel
66 Genotype networks in metabolic reaction spaces Samal, Areejit
2010
4 1 artikel
67 Global analysis of phase locking in gene expression during cell cycle: the potential in network modeling Gao, Shouguo
2010
4 1 artikel
68 HA novel approach to investigate tissue-specific trinucleotide repeat instability Lee, Jong-Min
2010
4 1 artikel
69 Hematopoietic differentiation: a coordinated dynamical process towards attractor stable states Felli, Nadia
2010
4 1 artikel
70 Hybrid modeling of biological networks: mixing temporal and qualitative biological properties Fromentin, Jonathan
2010
4 1 artikel
71 Hypoxia-dependent sequestration of an oxygen sensor by a widespread structural motif can shape the hypoxic response - a predictive kinetic model Schmierer, Bernhard
2010
4 1 artikel
72 Identification of responsive gene modules by network-based gene clustering and extending: application to inflammation and angiogenesis Gu, Jin
2010
4 1 artikel
73 Identifying essential genes in bacterial metabolic networks with machine learning methods Plaimas, Kitiporn
2010
4 1 artikel
74 Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma Liu, Huiqing
2010
4 1 artikel
75 Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks van Dijk, David
2010
4 1 artikel
76 Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data Zomorrodi, Ali R
2010
4 1 artikel
77 Increased entropy of signal transduction in the cancer metastasis phenotype Teschendorff, Andrew E
2010
4 1 artikel
78 Individual fates of mesenchymal stem cells in vitro Krinner, Axel
2010
4 1 artikel
79 Individual vs. combinatorial effect of elevated CO2 conditions and salinity stress on Arabidopsis thaliana liquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses Kanani, Harin
2010
4 1 artikel
80 Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data Gu, Fei
2010
4 1 artikel
81 Inferring genetic interactions via a nonlinear model and an optimization algorithm Chen, Chung-Ming
2010
4 1 artikel
82 Inferring modules from human protein interactome classes Marras, Elisabetta
2010
4 1 artikel
83 Inferring the conservative causal core of gene regulatory networks Altay, Gökmen
2010
4 1 artikel
84 Inferring the physical connectivity of complex networks from their functional dynamics Ta, Hung Xuan
2010
4 1 artikel
85 Information propagation within the Genetic Network of Saccharomyces cerevisiae Chowdhury, Sharif
2010
4 1 artikel
86 In silico feasibility of novel biodegradation pathways for 1,2,4-trichlorobenzene Finley, Stacey D
2010
4 1 artikel
87 Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma Dong, Hua
2010
4 1 artikel
88 Integrated cellular network of transcription regulations and protein-protein interactions Wang, Yu-Chao
2010
4 1 artikel
89 Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana Pop, Ana
2010
4 1 artikel
90 Integrated network analysis of transcriptomic and proteomic data in psoriasis Piruzian, Eleonora
2010
4 1 artikel
91 Integration of metabolic databases for the reconstruction of genome-scale metabolic networks Radrich, Karin
2010
4 1 artikel
92 Integration of transcriptional inputs at promoters of the arabinose catabolic pathway Davidson, Carla J
2010
4 1 artikel
93 Integrative analysis of large scale expression profiles reveals core transcriptional response and coordination between multiple cellular processes in a cyanobacterium Singh, Abhay K
2010
4 1 artikel
94 Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis Kaleta, Christoph
2010
4 1 artikel
95 Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms Christley, Scott
2010
4 1 artikel
96 In vitro gene regulatory networks predict in vivo function of liver Deng, Youping
2010
4 1 artikel
97 Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis Facciotti, Marc T
2010
4 1 artikel
98 Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans Swain, Suresh
2010
4 1 artikel
99 Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network Baumuratova, Tatiana
2010
4 1 artikel
100 Low-complexity regions within protein sequences have position-dependent roles Coletta, Alain
2010
4 1 artikel
101 Mathematical modeling of the dynamic storage of iron in ferritin Salgado, J Cristian
2010
4 1 artikel
102 Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes Na, Dokyun
2010
4 1 artikel
103 Meredys, a multi-compartment reaction-diffusion simulator using multistate realistic molecular complexes Tolle, Dominic P
2010
4 1 artikel
104 Metabolic effects of influenza virus infection in cultured animal cells: Intra- and extracellular metabolite profiling Ritter, Joachim B
2010
4 1 artikel
105 microRNA evolution in a human transcription factor and microRNA regulatory network Qiu, Chengxiang
2010
4 1 artikel
106 Minimally perturbing a gene regulatory network to avoid a disease phenotype: the glioma network as a test case Karlebach, Guy
2010
4 1 artikel
107 Model-based extension of high-throughput to high-content data Pfeifer, Andrea C
2010
4 1 artikel
108 Modeling cardiac β-adrenergic signaling with normalized-Hill differential equations: comparison with a biochemical model Kraeutler, Matthew J
2010
4 1 artikel
109 Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis Obertello, Mariana
2010
4 1 artikel
110 Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach von Stosch, Moritz
2010
4 1 artikel
111 Molecular mechanistic associations of human diseases Stegmaier, Philip
2010
4 1 artikel
112 Monotonicity, frustration, and ordered response: an analysis of the energy landscape of perturbed large-scale biological networks Iacono, Giovanni
2010
4 1 artikel
113 Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis Yao, Chen
2010
4 1 artikel
114 Network properties of human disease genes with pleiotropic effects Chavali, Sreenivas
2010
4 1 artikel
115 Noisy-threshold control of cell death Vilar, Jose MG
2010
4 1 artikel
116 On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter Coulon, Antoine
2010
4 1 artikel
117 OptFlux: an open-source software platform for in silico metabolic engineering Rocha, Isabel
2010
4 1 artikel
118 Optimization strategies for metabolic networks Domingues, Alexandre
2010
4 1 artikel
119 OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains Kim, Joonhoon
2010
4 1 artikel
120 Ordered structure of the transcription network inherited from the yeast whole-genome duplication Fusco, Diana
2010
4 1 artikel
121 Parameter estimation and inference for stochastic reaction-diffusion systems: application to morphogenesis in D. melanogaster Dewar, Michael A
2010
4 1 artikel
122 Parameter inference for discretely observed stochastic kinetic models using stochastic gradient descent Wang, Yuanfeng
2010
4 1 artikel
123 Patterns of human gene expression variance show strong associations with signaling network hierarchy Komurov, Kakajan
2010
4 1 artikel
124 Predicting functional associations from metabolism using bi-partite network algorithms Veeramani, Balaji
2010
4 1 artikel
125 Prediction of novel synthetic pathways for the production of desired chemicals Cho, Ayoun
2010
4 1 artikel
126 Prediction of quantitative phenotypes based on genetic networks: a case study in yeast sporulation Shen, Li
2010
4 1 artikel
127 Probability distributed time delays: integrating spatial effects into temporal models Marquez-Lago, Tatiana T
2010
4 1 artikel
128 Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks Chakraborty, Sandip
2010
4 1 artikel
129 Protein complex prediction based on k-connected subgraphs in protein interaction network Habibi, Mahnaz
2010
4 1 artikel
130 Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets Ho, Hsiang
2010
4 1 artikel
131 Quantifying uncertainty, variability and likelihood for ordinary differential equation models Weiße, Andrea Y
2010
4 1 artikel
132 Quantitative global studies of reactomes and metabolomes using a vectorial representation of reactions and chemical compounds Triviño, Juan C
2010
4 1 artikel
133 Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium Montagud, Arnau
2010
4 1 artikel
134 Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation Nandy, Subir K
2010
4 1 artikel
135 Regulation patterns in signaling networks of cancer Schramm, Gunnar
2010
4 1 artikel
136 Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells Linde, Jörg
2010
4 1 artikel
137 Reverse engineering a gene network using an asynchronous parallel evolution strategy Jostins, Luke
2010
4 1 artikel
138 Robust dynamical pattern formation from a multifunctional minimal genetic circuit Rodrigo, Guillermo
2010
4 1 artikel
139 Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network Miller, Gregory M
2010
4 1 artikel
140 Robustness from flexibility in the fungal circadian clock Akman, Ozgur E
2010
4 1 artikel
141 Searching for functional gene modules with interaction component models Parkkinen, Juuso A
2010
4 1 artikel
142 Set-base dynamical parameter estimation and model invalidation for biochemical reaction networks Rumschinski, Philipp
2010
4 1 artikel
143 Signaling network of dendritic cells in response to pathogens: a community-input supported knowledgebase Patil, Sonali
2010
4 1 artikel
144 Simulation methods with extended stability for stiff biochemical Kinetics Rué, Pau
2010
4 1 artikel
145 Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche Azpeitia, Eugenio
2010
4 1 artikel
146 Snazer: the simulations and networks analyzer Mazza, Tommaso
2010
4 1 artikel
147 Solving the chemical master equation using sliding windows Wolf, Verena
2010
4 1 artikel
148 So what do we really mean when we say that systems biology is holistic? Gatherer, Derek
2010
4 1 artikel
149 Spatio-temporal modeling of signaling protein recruitment to EGFR Hsieh, Ming-yu
2010
4 1 artikel
150 Statistical inference of the time-varying structure of gene-regulation networks Lèbre, Sophie
2010
4 1 artikel
151 Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study Twycross, Jamie
2010
4 1 artikel
152 Stochastic Modeling of B Lymphocyte Terminal Differentiation and Its Suppression by Dioxin Zhang, Qiang
2010
4 1 artikel
153 Stress-specific response of the p53-Mdm2 feedback loop Hunziker, Alexander
2010
4 1 artikel
154 SVM classifier to predict genes important for self-renewal and pluripotency of mouse embryonic stem cells Xu, Huilei
2010
4 1 artikel
155 Systems analysis of iron metabolism: the network of iron pools and fluxes Lopes, Tiago JS
2010
4 1 artikel
156 Systems approach to investigating host-pathogen interactions in infections with the biothreat agent Francisella. Constraints-based model of Francisella tularensis Raghunathan, Anu
2010
4 1 artikel
157 Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase Valgepea, Kaspar
2010
4 1 artikel
158 Systems genetics analyses predict a transcription role for P2P-R: Molecular confirmation that P2P-R is a transcriptional co-repressor Peidis, Philippos
2010
4 1 artikel
159 Targeted protein depletion in Saccharomyces cerevisiae by activation of a bidirectional degron Jungbluth, Marc
2010
4 1 artikel
160 The biological context of HIV-1 host interactions reveals subtle insights into a system hijack Dickerson, Jonathan E
2010
4 1 artikel
161 The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis Brilli, Matteo
2010
4 1 artikel
162 The function of communities in protein interaction networks at multiple scales Lewis, Anna CF
2010
4 1 artikel
163 The internal state of medium spiny neurons varies in response to different input signals Qi, Zhen
2010
4 1 artikel
164 The mEPN scheme: an intuitive and flexible graphical system for rendering biological pathways Freeman, Tom C
2010
4 1 artikel
165 The protein kinase Mζ network as a bistable switch to store neuronal memory Ogasawara, Hideaki
2010
4 1 artikel
166 The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression Mohamad, Nurul
2010
4 1 artikel
167 Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects Dresch, Jacqueline M
2010
4 1 artikel
168 The role of noise and positive feedback in the onset of autosomal dominant diseases Bosl, William J
2010
4 1 artikel
169 The spermatozoa caught in the net: the biological networks to study the male gametes post-ejaculatory life Bernabò, Nicola
2010
4 1 artikel
170 The zipper mechanism in phagocytosis: energetic requirements and variability in phagocytic cup shape Tollis, Sylvain
2010
4 1 artikel
171 Towards a genome-scale kinetic model of cellular metabolism Smallbone, Kieran
2010
4 1 artikel
172 Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates Fendt, Sarah-Maria
2010
4 1 artikel
173 Transformation of metabolism with age and lifestyle in Antarctic seals: a case study of systems biology approach to cross-species microarray experiment Ptitsyn, Andrey
2010
4 1 artikel
174 Two additive mechanisms impair the differentiation of 'substrate-selective' p38 inhibitors from classical p38 inhibitors in vitro Hendriks, Bart S
2010
4 1 artikel
175 Ultrasensitive Responses and Specificity in Cell Signaling Haney, Seth
2010
4 1 artikel
176 Understanding protein evolutionary rate by integrating gene co-expression with protein interactions Pang, Kaifang
2010
4 1 artikel
177 Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic flux determination and optimal metabolic network design Boghigian, Brett A
2010
4 1 artikel
178 Validation of a constraint-based model of Pichia pastoris metabolism under data scarcity Tortajada, Marta
2010
4 1 artikel
179 Zooming of states and parameters using a lumping approach including back-translation Sunnåker, Mikael
2010
4 1 artikel
                             179 gevonden resultaten
 
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