| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A combinatorial approach to determine the context-dependent role in transcriptional and posttranscriptional regulation in Arabidopsis thaliana
|
Lu, Le
|
|
2009
|
3 |
1 |
|
artikel
|
| 2 |
A computational approach to resolve cell level contributions to early glandular epithelial cancer progression
|
Kim, Sean HJ
|
|
2009
|
3 |
1 |
|
artikel
|
| 3 |
Adapted Boolean network models for extracellular matrix formation
|
Wollbold, Johannes
|
|
2009
|
3 |
1 |
|
artikel
|
| 4 |
A Drosophila systems model of pentylenetetrazole induced locomotor plasticity responsive to antiepileptic drugs
|
Mohammad, Farhan
|
|
2009
|
3 |
1 |
|
artikel
|
| 5 |
A dynamic network of transcription in LPS-treated human subjects
|
Seok, Junhee
|
|
2009
|
3 |
1 |
|
artikel
|
| 6 |
A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola
|
Thomas, Gavin H
|
|
2009
|
3 |
1 |
|
artikel
|
| 7 |
A framework for evolutionary systems biology
|
Loewe, Laurence
|
|
2009
|
3 |
1 |
|
artikel
|
| 8 |
A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism
|
Chu, Jen-hwa
|
|
2009
|
3 |
1 |
|
artikel
|
| 9 |
A method for determining the robustness of bio-molecular oscillator models
|
Ghaemi, Reza
|
|
2009
|
3 |
1 |
|
artikel
|
| 10 |
A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides
|
Roberts, Mark AJ
|
|
2009
|
3 |
1 |
|
artikel
|
| 11 |
A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation
|
Mobini, Reza
|
|
2009
|
3 |
1 |
|
artikel
|
| 12 |
Analytical approximations for the amplitude and period of a relaxation oscillator
|
Kut, Carmen
|
|
2009
|
3 |
1 |
|
artikel
|
| 13 |
An approach to evaluate the topological significance of motifs and other patterns in regulatory networks
|
Goemann, Björn
|
|
2009
|
3 |
1 |
|
artikel
|
| 14 |
An editor for pathway drawing and data visualization in the Biopathways Workbench
|
Byrnes, Robert W
|
|
2009
|
3 |
1 |
|
artikel
|
| 15 |
An evaluation of minimal cellular functions to sustain a bacterial cell
|
Azuma, Yusuke
|
|
2009
|
3 |
1 |
|
artikel
|
| 16 |
An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules
|
Qin, Huaxia
|
|
2009
|
3 |
1 |
|
artikel
|
| 17 |
A possibilistic framework for constraint-based metabolic flux analysis
|
Llaneras, Francisco
|
|
2009
|
3 |
1 |
|
artikel
|
| 18 |
A systematic design method for robust synthetic biology to satisfy design specifications
|
Chen, Bor-Sen
|
|
2009
|
3 |
1 |
|
artikel
|
| 19 |
A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule"
|
Nero, Damion
|
|
2009
|
3 |
1 |
|
artikel
|
| 20 |
A systems biology framework for modeling metabolic enzyme inhibition of Mycobacterium tuberculosis
|
Fang, Xin
|
|
2009
|
3 |
1 |
|
artikel
|
| 21 |
Bifurcation analysis informs Bayesian inference in the Hes1 feedback loop
|
Higham, Catherine F
|
|
2009
|
3 |
1 |
|
artikel
|
| 22 |
BowTieBuilder: modeling signal transduction pathways
|
Supper, Jochen
|
|
2009
|
3 |
1 |
|
artikel
|
| 23 |
Calculation of the relative metastabilities of proteins in subcellular compartments of Saccharomyces cerevisiae
|
Dick, Jeffrey M
|
|
2009
|
3 |
1 |
|
artikel
|
| 24 |
Cascading signaling pathways improve the fidelity of a stochastically and deterministically simulated molecular RS latch
|
Mills, Evan
|
|
2009
|
3 |
1 |
|
artikel
|
| 25 |
ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists
|
Helikar, Tomáš
|
|
2009
|
3 |
1 |
|
artikel
|
| 26 |
Clustered microRNAs' coordination in regulating protein-protein interaction network
|
Yuan, Xiongying
|
|
2009
|
3 |
1 |
|
artikel
|
| 27 |
13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose
|
Jouhten, Paula
|
|
2009
|
3 |
1 |
|
artikel
|
| 28 |
Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks
|
Michoel, Tom
|
|
2009
|
3 |
1 |
|
artikel
|
| 29 |
Computational disease modeling – fact or fiction?
|
Tegnér, Jesper N
|
|
2009
|
3 |
1 |
|
artikel
|
| 30 |
Computational modeling of the EGFR network elucidates control mechanisms regulating signal dynamics
|
Wang, Dennis YQ
|
|
2009
|
3 |
1 |
|
artikel
|
| 31 |
Computational modelling of cancerous mutations in the EGFR/ERK signalling pathway
|
Orton, Richard J
|
|
2009
|
3 |
1 |
|
artikel
|
| 32 |
Computing phenomenologic Adair-Klotz constants from microscopic MWC parameters
|
Stefan, Melanie I
|
|
2009
|
3 |
1 |
|
artikel
|
| 33 |
Connecting extracellular metabolomic measurements to intracellular flux states in yeast
|
Mo, Monica L
|
|
2009
|
3 |
1 |
|
artikel
|
| 34 |
Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction
|
Raghunathan, Anu
|
|
2009
|
3 |
1 |
|
artikel
|
| 35 |
Coordinations between gene modules control the operation of plant amino acid metabolic networks
|
Less, Hadar
|
|
2009
|
3 |
1 |
|
artikel
|
| 36 |
DASMiner: discovering and integrating data from DAS sources
|
Veiga, Diogo FT
|
|
2009
|
3 |
1 |
|
artikel
|
| 37 |
Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation
|
Barrett, Christian L
|
|
2009
|
3 |
1 |
|
artikel
|
| 38 |
Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression
|
Sprinzak, Einat
|
|
2009
|
3 |
1 |
|
artikel
|
| 39 |
Deterministic mathematical models of the cAMP pathway in Saccharomyces cerevisiae
|
Williamson, Thomas
|
|
2009
|
3 |
1 |
|
artikel
|
| 40 |
Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle
|
Bushel, Pierre R
|
|
2009
|
3 |
1 |
|
artikel
|
| 41 |
Dynamic simulations on the mitochondrial fatty acid Beta-oxidation network
|
Modre-Osprian, Robert
|
|
2009
|
3 |
1 |
|
artikel
|
| 42 |
Efficiency of complex production in changing environment
|
Carmi, Shai
|
|
2009
|
3 |
1 |
|
artikel
|
| 43 |
Efficient, sparse biological network determination
|
August, Elias
|
|
2009
|
3 |
1 |
|
artikel
|
| 44 |
Elongation, proliferation & migration differentiate endothelial cell phenotypes and determine capillary sprouting
|
Qutub, Amina A
|
|
2009
|
3 |
1 |
|
artikel
|
| 45 |
Evolution of multiple phosphodiesterase isoforms in stickleback involved in cAMP signal transduction pathway
|
Sato, Yukuto
|
|
2009
|
3 |
1 |
|
artikel
|
| 46 |
Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions
|
Pache, Roland A
|
|
2009
|
3 |
1 |
|
artikel
|
| 47 |
Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii
|
Boyle, Nanette R
|
|
2009
|
3 |
1 |
|
artikel
|
| 48 |
Flux Design: In silico design of cell factories based on correlation of pathway fluxes to desired properties
|
Melzer, Guido
|
|
2009
|
3 |
1 |
|
artikel
|
| 49 |
Flux-sum analysis: a metabolite-centric approach for understanding the metabolic network
|
Chung, Bevan Kai Sheng
|
|
2009
|
3 |
1 |
|
artikel
|
| 50 |
FORG3D: Force-directed 3D graph editor for visualization of integrated genome scale data
|
Paananen, Jussi
|
|
2009
|
3 |
1 |
|
artikel
|
| 51 |
From gene expression to gene regulatory networks in Arabidopsis thaliana
|
Needham, Chris J
|
|
2009
|
3 |
1 |
|
artikel
|
| 52 |
Genetic and environmental pathways to complex diseases
|
Gohlke, Julia M
|
|
2009
|
3 |
1 |
|
artikel
|
| 53 |
Genome-scale constraint-based modeling of Geobacter metallireducens
|
Sun, Jun
|
|
2009
|
3 |
1 |
|
artikel
|
| 54 |
Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3
|
Cimini, Donatella
|
|
2009
|
3 |
1 |
|
artikel
|
| 55 |
Hierarchical coordination of periodic genes in the cell cycle of Saccharomyces cerevisiae
|
Emmert-Streib, Frank
|
|
2009
|
3 |
1 |
|
artikel
|
| 56 |
How to identify essential genes from molecular networks?
|
del Rio, Gabriel
|
|
2009
|
3 |
1 |
|
artikel
|
| 57 |
Human synthetic lethal inference as potential anti-cancer target gene detection
|
Conde-Pueyo, Nuria
|
|
2009
|
3 |
1 |
|
artikel
|
| 58 |
Hybrid stochastic simplifications for multiscale gene networks
|
Crudu, Alina
|
|
2009
|
3 |
1 |
|
artikel
|
| 59 |
Identification of neutral biochemical network models from time series data
|
Vilela, Marco
|
|
2009
|
3 |
1 |
|
artikel
|
| 60 |
Identifying disease-specific genes based on their topological significance in protein networks
|
Dezső, Zoltán
|
|
2009
|
3 |
1 |
|
artikel
|
| 61 |
Impact of environmental inputs on reverse-engineering approach to network structures
|
Wu, Jianhua
|
|
2009
|
3 |
1 |
|
artikel
|
| 62 |
Inference of gene pathways using mixture Bayesian networks
|
Ko, Younhee
|
|
2009
|
3 |
1 |
|
artikel
|
| 63 |
Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis
|
Chen, Shun-Fu
|
|
2009
|
3 |
1 |
|
artikel
|
| 64 |
Inferring branching pathways in genome-scale metabolic networks
|
Pitkänen, Esa
|
|
2009
|
3 |
1 |
|
artikel
|
| 65 |
Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis
|
Fomekong-Nanfack, Yves
|
|
2009
|
3 |
1 |
|
artikel
|
| 66 |
Information flow during gene activation by signaling molecules: ethylene transduction in Arabidopsis cells as a study system
|
Díaz, José
|
|
2009
|
3 |
1 |
|
artikel
|
| 67 |
Information processing in the transcriptional regulatory network of yeast: Functional robustness
|
Emmert-Streib, Frank
|
|
2009
|
3 |
1 |
|
artikel
|
| 68 |
Information theoretical quantification of cooperativity in signalling complexes
|
Lenaerts, Tom
|
|
2009
|
3 |
1 |
|
artikel
|
| 69 |
In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study
|
Taffs, Reed
|
|
2009
|
3 |
1 |
|
artikel
|
| 70 |
Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell
|
Marco, Antonio
|
|
2009
|
3 |
1 |
|
artikel
|
| 71 |
Intervention in gene regulatory networks via greedy control policies based on long-run behavior
|
Qian, Xiaoning
|
|
2009
|
3 |
1 |
|
artikel
|
| 72 |
Investigating the robustness of the classical enzyme kinetic equations in small intracellular compartments
|
Grima, Ramon
|
|
2009
|
3 |
1 |
|
artikel
|
| 73 |
Knowledge based identification of essential signaling from genome-scale siRNA experiments
|
Bankhead, Armand
|
|
2009
|
3 |
1 |
|
artikel
|
| 74 |
Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network
|
Atias, Osnat
|
|
2009
|
3 |
1 |
|
artikel
|
| 75 |
LeishCyc: a biochemical pathways database for Leishmania major
|
Doyle, Maria A
|
|
2009
|
3 |
1 |
|
artikel
|
| 76 |
Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model
|
Bar, Nadav S
|
|
2009
|
3 |
1 |
|
artikel
|
| 77 |
Mechanism of PP2A-mediated IKKβ dephosphorylation: a systems biological approach
|
Witt, Johannes
|
|
2009
|
3 |
1 |
|
artikel
|
| 78 |
Metabolic investigation of host/pathogen interaction using MS2-infected Escherichia coli
|
Jain, Rishi
|
|
2009
|
3 |
1 |
|
artikel
|
| 79 |
Metabolism as means for hypoxia adaptation: metabolic profiling and flux balance analysis
|
Feala, Jacob D
|
|
2009
|
3 |
1 |
|
artikel
|
| 80 |
miRNA-regulated dynamics in circadian oscillator models
|
Nandi, Amitabha
|
|
2009
|
3 |
1 |
|
artikel
|
| 81 |
Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance
|
Sahin, Özgür
|
|
2009
|
3 |
1 |
|
artikel
|
| 82 |
Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies
|
Dräger, Andreas
|
|
2009
|
3 |
1 |
|
artikel
|
| 83 |
Modeling system states in liver cells: Survival, apoptosis and their modifications in response to viral infection
|
Philippi, Nicole
|
|
2009
|
3 |
1 |
|
artikel
|
| 84 |
Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network
|
Kühn, Clemens
|
|
2009
|
3 |
1 |
|
artikel
|
| 85 |
mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle
|
Soranzo, Nicola
|
|
2009
|
3 |
1 |
|
artikel
|
| 86 |
Narrative-based computational modelling of the Gp130/JAK/STAT signalling pathway
|
Guerriero, Maria Luisa
|
|
2009
|
3 |
1 |
|
artikel
|
| 87 |
Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phase
|
Pin, Carmen
|
|
2009
|
3 |
1 |
|
artikel
|
| 88 |
On gene dosage balance in protein complexes: a comment on Semple JI, Vavouri T, Lehner B. A simple principle concerning the robustness of protein complex activity to changes in gene expression.
|
Veitia, Reiner A
|
|
2009
|
3 |
1 |
|
artikel
|
| 89 |
On the functional diversity of dynamical behaviour in genetic and metabolic feedback systems
|
Nguyen, Lan K
|
|
2009
|
3 |
1 |
|
artikel
|
| 90 |
Optimal drug combinations and minimal hitting sets
|
Vazquez, Alexei
|
|
2009
|
3 |
1 |
|
artikel
|
| 91 |
Protein evolution on a human signaling network
|
Cui, Qinghua
|
|
2009
|
3 |
1 |
|
artikel
|
| 92 |
Protein-protein interaction as a predictor of subcellular location
|
Shin, Chang Jin
|
|
2009
|
3 |
1 |
|
artikel
|
| 93 |
Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi
|
Roberts, Seth B
|
|
2009
|
3 |
1 |
|
artikel
|
| 94 |
Ranges of control in the transcriptional regulation of Escherichia coli
|
Sonnenschein, Nikolaus
|
|
2009
|
3 |
1 |
|
artikel
|
| 95 |
Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae
|
Christensen, Tobias S
|
|
2009
|
3 |
1 |
|
artikel
|
| 96 |
Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations
|
Zare, Hossein
|
|
2009
|
3 |
1 |
|
artikel
|
| 97 |
Reconstruction of metabolic pathways for the cattle genome
|
Seo, Seongwon
|
|
2009
|
3 |
1 |
|
artikel
|
| 98 |
Recursive regularization for inferring gene networks from time-course gene expression profiles
|
Shimamura, Teppei
|
|
2009
|
3 |
1 |
|
artikel
|
| 99 |
Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms
|
Baumbach, Jan
|
|
2009
|
3 |
1 |
|
artikel
|
| 100 |
Roles of the creatine kinase system and myoglobin in maintaining energetic state in the working heart
|
Wu, Fan
|
|
2009
|
3 |
1 |
|
artikel
|
| 101 |
Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains
|
Buendia, Patricia
|
|
2009
|
3 |
1 |
|
artikel
|
| 102 |
Simple molecular networks that respond optimally to time-periodic stimulation
|
Cournac, Axel
|
|
2009
|
3 |
1 |
|
artikel
|
| 103 |
Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension
|
Li, Chen
|
|
2009
|
3 |
1 |
|
artikel
|
| 104 |
Small molecule activators of SIRT1 replicate signaling pathways triggered by calorie restriction in vivo
|
Smith, Jesse J
|
|
2009
|
3 |
1 |
|
artikel
|
| 105 |
SNAVI: Desktop application for analysis and visualization of large-scale signaling networks
|
Ma'ayan, Avi
|
|
2009
|
3 |
1 |
|
artikel
|
| 106 |
Specialized or flexible feed-forward loop motifs: a question of topology
|
Macía, Javier
|
|
2009
|
3 |
1 |
|
artikel
|
| 107 |
Spectral affinity in protein networks
|
Voevodski, Konstantin
|
|
2009
|
3 |
1 |
|
artikel
|
| 108 |
Stochastic simulation and analysis of biomolecular reaction networks
|
Frazier, John M
|
|
2009
|
3 |
1 |
|
artikel
|
| 109 |
Systematic identifiability testing for unambiguous mechanistic modeling – application to JAK-STAT, MAP kinase, and NF-κB signaling pathway models
|
Quaiser, Tom
|
|
2009
|
3 |
1 |
|
artikel
|
| 110 |
The capacity for multistability in small gene regulatory networks
|
Siegal-Gaskins, Dan
|
|
2009
|
3 |
1 |
|
artikel
|
| 111 |
The crosstalk between EGF, IGF, and Insulin cell signaling pathways - computational and experimental analysis
|
Zielinski, Rafal
|
|
2009
|
3 |
1 |
|
artikel
|
| 112 |
The genotype-phenotype relationship in multicellular pattern-generating models - the neglected role of pattern descriptors
|
Martens, Harald
|
|
2009
|
3 |
1 |
|
artikel
|
| 113 |
The mathematics of tanning
|
Thingnes, Josef
|
|
2009
|
3 |
1 |
|
artikel
|
| 114 |
The smallest chemical reaction system with bistability
|
Wilhelm, Thomas
|
|
2009
|
3 |
1 |
|
artikel
|
| 115 |
The Symbiosis Interactome: a computational approach reveals novel components, functional interactions and modules in Sinorhizobium meliloti
|
Rodriguez-Llorente, Ignacio
|
|
2009
|
3 |
1 |
|
artikel
|
| 116 |
Topological and organizational properties of the products of house-keeping and tissue-specific genes in protein-protein interaction networks
|
Lin, Wen-hsien
|
|
2009
|
3 |
1 |
|
artikel
|
| 117 |
Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling
|
Wittmann, Dominik M
|
|
2009
|
3 |
1 |
|
artikel
|
| 118 |
Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation
|
Huang, Albert C
|
|
2009
|
3 |
1 |
|
artikel
|
| 119 |
Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes
|
Jamshidi, Neema
|
|
2009
|
3 |
1 |
|
artikel
|
| 120 |
Using the ratio of means as the effect size measure in combining results of microarray experiments
|
Hu, Pingzhao
|
|
2009
|
3 |
1 |
|
artikel
|
| 121 |
Version control of pathway models using XML patches
|
Saffrey, Peter
|
|
2009
|
3 |
1 |
|
artikel
|
| 122 |
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
|
Neuweger, Heiko
|
|
2009
|
3 |
1 |
|
artikel
|
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