| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A compartment model of VEGF distribution in blood, healthy and diseased tissues
|
Stefanini, Marianne O
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2008
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2 |
1 |
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artikel
|
| 2 |
A computational analysis of protein-protein interaction networks in neurodegenerative diseases
|
Goñi, Joaquín
|
|
2008
|
2 |
1 |
|
artikel
|
| 3 |
A Dominated Coupling From The Past algorithm for the stochastic simulation of networks of biochemical reactions
|
Hemberg, Martin
|
|
2008
|
2 |
1 |
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artikel
|
| 4 |
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory
|
Nogales, Juan
|
|
2008
|
2 |
1 |
|
artikel
|
| 5 |
ALC: automated reduction of rule-based models
|
Koschorreck, Markus
|
|
2008
|
2 |
1 |
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artikel
|
| 6 |
A logic-based diagram of signalling pathways central to macrophage activation
|
Raza, Sobia
|
|
2008
|
2 |
1 |
|
artikel
|
| 7 |
An in silico method for detecting overlapping functional modules from composite biological networks
|
Maraziotis, Ioannis A
|
|
2008
|
2 |
1 |
|
artikel
|
| 8 |
An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis
|
Thum, Karen E
|
|
2008
|
2 |
1 |
|
artikel
|
| 9 |
Annotating novel genes by integrating synthetic lethals and genomic information
|
Schöner, Daniel
|
|
2008
|
2 |
1 |
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artikel
|
| 10 |
An ultrasensitive sorting mechanism for EGF Receptor Endocytosis
|
Schmidt-Glenewinkel, Hannah
|
|
2008
|
2 |
1 |
|
artikel
|
| 11 |
A quantitative estimation of the global translational activity in logarithmically growing yeast cells
|
von der Haar, Tobias
|
|
2008
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2 |
1 |
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artikel
|
| 12 |
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
|
Oliveira, Ana Paula
|
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2008
|
2 |
1 |
|
artikel
|
| 13 |
Arena3D: visualization of biological networks in 3D
|
Pavlopoulos, Georgios A
|
|
2008
|
2 |
1 |
|
artikel
|
| 14 |
A review of imaging techniques for systems biology
|
Kherlopian, Armen R
|
|
2008
|
2 |
1 |
|
artikel
|
| 15 |
A simple principle concerning the robustness of protein complex activity to changes in gene expression
|
Semple, Jennifer I
|
|
2008
|
2 |
1 |
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artikel
|
| 16 |
A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency
|
Amar, Patrick
|
|
2008
|
2 |
1 |
|
artikel
|
| 17 |
A systematic molecular circuit design method for gene networks under biochemical time delays and molecular noises
|
Chen, Bor-Sen
|
|
2008
|
2 |
1 |
|
artikel
|
| 18 |
A systems approach to model natural variation in reactive properties of bacterial ribosomes
|
Jackson, Julius H
|
|
2008
|
2 |
1 |
|
artikel
|
| 19 |
A systems biology approach to analyse amplification in the JAK2-STAT5 signalling pathway
|
Vera, Julio
|
|
2008
|
2 |
1 |
|
artikel
|
| 20 |
Biomolecular network querying: a promising approach in systems biology
|
Zhang, Shihua
|
|
2008
|
2 |
1 |
|
artikel
|
| 21 |
Can single knockouts accurately single out gene functions?
|
Deutscher, David
|
|
2008
|
2 |
1 |
|
artikel
|
| 22 |
Comparative analysis of the transcription-factor gene regulatory networks of E. coli and S. cerevisiae
|
Guzmán-Vargas, Lev
|
|
2008
|
2 |
1 |
|
artikel
|
| 23 |
Comprehensive proteomic analysis of bovine spermatozoa of varying fertility rates and identification of biomarkers associated with fertility
|
Peddinti, Divyaswetha
|
|
2008
|
2 |
1 |
|
artikel
|
| 24 |
Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants
|
Weston, David J
|
|
2008
|
2 |
1 |
|
artikel
|
| 25 |
Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements
|
Jiang, Wei
|
|
2008
|
2 |
1 |
|
artikel
|
| 26 |
Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets
|
Chu, Liang-Hui
|
|
2008
|
2 |
1 |
|
artikel
|
| 27 |
Defining a Modular Signalling Network from the Fly Interactome
|
Baudot, Anaïs
|
|
2008
|
2 |
1 |
|
artikel
|
| 28 |
Dissecting the logical types of network control in gene expression profiles
|
Marr, Carsten
|
|
2008
|
2 |
1 |
|
artikel
|
| 29 |
Dynamical modeling of the cholesterol regulatory pathway with Boolean networks
|
Kervizic, Gwenael
|
|
2008
|
2 |
1 |
|
artikel
|
| 30 |
Dynamical pathway analysis
|
Xiong, Hao
|
|
2008
|
2 |
1 |
|
artikel
|
| 31 |
Dynamics of receptor and protein transducer homodimerisation
|
Vera, Julio
|
|
2008
|
2 |
1 |
|
artikel
|
| 32 |
Elucidating the mechanisms of cooperative calcium-calmodulin interactions: a structural systems biology approach
|
Valeyev, Najl V
|
|
2008
|
2 |
1 |
|
artikel
|
| 33 |
Employing conservation of co-expression to improve functional inference
|
Daub, Carsten O
|
|
2008
|
2 |
1 |
|
artikel
|
| 34 |
Equilibrium model selection: dTTP induced R1 dimerization
|
Radivoyevitch, Tomas
|
|
2008
|
2 |
1 |
|
artikel
|
| 35 |
Essential operating principles for tumor spheroid growth
|
Engelberg, Jesse A
|
|
2008
|
2 |
1 |
|
artikel
|
| 36 |
Evidence of probabilistic behaviour in protein interaction networks
|
Ivanic, Joseph
|
|
2008
|
2 |
1 |
|
artikel
|
| 37 |
Exact model reduction of combinatorial reaction networks
|
Conzelmann, Holger
|
|
2008
|
2 |
1 |
|
artikel
|
| 38 |
Exhaustive identification of steady state cycles in large stoichiometric networks
|
Wright, Jeremiah
|
|
2008
|
2 |
1 |
|
artikel
|
| 39 |
Explaining oscillations and variability in the p53-Mdm2 system
|
Proctor, Carole J
|
|
2008
|
2 |
1 |
|
artikel
|
| 40 |
Exploiting the pathway structure of metabolism to reveal high-order epistasis
|
Imielinski, Marcin
|
|
2008
|
2 |
1 |
|
artikel
|
| 41 |
Extracting expression modules from perturbational gene expression compendia
|
Maere, Steven
|
|
2008
|
2 |
1 |
|
artikel
|
| 42 |
Extraction of elementary rate constants from global network analysis of E. coli central metabolism
|
Zhao, Jiao
|
|
2008
|
2 |
1 |
|
artikel
|
| 43 |
From pathway to population – a multiscale model of juxtacrine EGFR-MAPK signalling
|
Walker, DC
|
|
2008
|
2 |
1 |
|
artikel
|
| 44 |
From protein interactions to functional annotation: graph alignment in Herpes
|
Kolář, Michal
|
|
2008
|
2 |
1 |
|
artikel
|
| 45 |
Genetic and systems level analysis of Drosophila sticky/citron kinase and dFmr1 mutants reveals common regulation of genetic networks
|
Bauer, Christopher R
|
|
2008
|
2 |
1 |
|
artikel
|
| 46 |
Genetic noise control via protein oligomerization
|
Ghim, Cheol-Min
|
|
2008
|
2 |
1 |
|
artikel
|
| 47 |
Global parameter search reveals design principles of the mammalian circadian clock
|
Locke, James CW
|
|
2008
|
2 |
1 |
|
artikel
|
| 48 |
GridCell: a stochastic particle-based biological system simulator
|
Boulianne, Laurier
|
|
2008
|
2 |
1 |
|
artikel
|
| 49 |
Host-pathogen systems biology: logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction
|
Franke, Raimo
|
|
2008
|
2 |
1 |
|
artikel
|
| 50 |
Hybrid optimization for 13C metabolic flux analysis using systems parametrized by compactification
|
Yang, Tae Hoon
|
|
2008
|
2 |
1 |
|
artikel
|
| 51 |
Hybrid optimization method with general switching strategy for parameter estimation
|
Balsa-Canto, Eva
|
|
2008
|
2 |
1 |
|
artikel
|
| 52 |
Identification of gene interactions associated with disease from gene expression data using synergy networks
|
Watkinson, John
|
|
2008
|
2 |
1 |
|
artikel
|
| 53 |
Impact of the solvent capacity constraint on E. coli metabolism
|
Vazquez, Alexei
|
|
2008
|
2 |
1 |
|
artikel
|
| 54 |
Incorporation of enzyme concentrations into FBA and identification of optimal metabolic pathways
|
De, Rajat K
|
|
2008
|
2 |
1 |
|
artikel
|
| 55 |
Integrated modeling and experimental approach for determining transcription factor profiles from fluorescent reporter data
|
Huang, Zuyi
|
|
2008
|
2 |
1 |
|
artikel
|
| 56 |
Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome
|
Presson, Angela P
|
|
2008
|
2 |
1 |
|
artikel
|
| 57 |
Interactive analysis of systems biology molecular expression data
|
Zhang, Mingwu
|
|
2008
|
2 |
1 |
|
artikel
|
| 58 |
Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: a dynamic spatial model
|
Benítez, Mariana
|
|
2008
|
2 |
1 |
|
artikel
|
| 59 |
Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data
|
Durot, Maxime
|
|
2008
|
2 |
1 |
|
artikel
|
| 60 |
Linear analysis near a steady-state of biochemical networks: Control analysis, correlation metrics and circuit theory
|
Heuett, William J
|
|
2008
|
2 |
1 |
|
artikel
|
| 61 |
Linking the ovarian cancer transcriptome and immunome
|
Rapberger, Ronald
|
|
2008
|
2 |
1 |
|
artikel
|
| 62 |
Machine learning based analyses on metabolic networks supports high-throughput knockout screens
|
Plaimas, Kitiporn
|
|
2008
|
2 |
1 |
|
artikel
|
| 63 |
Mathematical modeling and analysis of insulin clearance in vivo
|
Koschorreck, Markus
|
|
2008
|
2 |
1 |
|
artikel
|
| 64 |
Metabolic modelling of polyhydroxyalkanoate copolymers production by mixed microbial cultures
|
Dias, João ML
|
|
2008
|
2 |
1 |
|
artikel
|
| 65 |
Metabolic pathway alignment between species using a comprehensive and flexible similarity measure
|
Li, Yunlei
|
|
2008
|
2 |
1 |
|
artikel
|
| 66 |
Modeling cellular deformations using the level set formalism
|
Yang, Liu
|
|
2008
|
2 |
1 |
|
artikel
|
| 67 |
Modelling phagosomal lipid networks that regulate actin assembly
|
Kühnel, Mark
|
|
2008
|
2 |
1 |
|
artikel
|
| 68 |
Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates
|
Fujita, André
|
|
2008
|
2 |
1 |
|
artikel
|
| 69 |
Multiway modeling and analysis in stem cell systems biology
|
Yener, Bülent
|
|
2008
|
2 |
1 |
|
artikel
|
| 70 |
Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans
|
Jordan, I King
|
|
2008
|
2 |
1 |
|
artikel
|
| 71 |
Network evaluation from the consistency of the graph structure with the measured data
|
Saito, Shigeru
|
|
2008
|
2 |
1 |
|
artikel
|
| 72 |
On cycles in the transcription network of Saccharomyces cerevisiae
|
Jeong, Jieun
|
|
2008
|
2 |
1 |
|
artikel
|
| 73 |
One hub-one process: a tool based view on regulatory network topology
|
Axelsen, Jacob Bock
|
|
2008
|
2 |
1 |
|
artikel
|
| 74 |
On the origin of distribution patterns of motifs in biological networks
|
Konagurthu, Arun S
|
|
2008
|
2 |
1 |
|
artikel
|
| 75 |
OptCircuit: An optimization based method for computational design of genetic circuits
|
Dasika, Madhukar S
|
|
2008
|
2 |
1 |
|
artikel
|
| 76 |
Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability
|
Cao, Youfang
|
|
2008
|
2 |
1 |
|
artikel
|
| 77 |
Optimization in computational systems biology
|
Banga, Julio R
|
|
2008
|
2 |
1 |
|
artikel
|
| 78 |
Origin of structural difference in metabolic networks with respect to temperature
|
Takemoto, Kazuhiro
|
|
2008
|
2 |
1 |
|
artikel
|
| 79 |
Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A
|
Jouhten, Paula
|
|
2008
|
2 |
1 |
|
artikel
|
| 80 |
Parameter estimation and determinability analysis applied to Drosophila gap gene circuits
|
Ashyraliyev, Maksat
|
|
2008
|
2 |
1 |
|
artikel
|
| 81 |
Parameter optimization in S-system models
|
Vilela, Marco
|
|
2008
|
2 |
1 |
|
artikel
|
| 82 |
Phenotype prediction in regulated metabolic networks
|
Kaleta, Christoph
|
|
2008
|
2 |
1 |
|
artikel
|
| 83 |
Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracle
|
Ruths, Derek
|
|
2008
|
2 |
1 |
|
artikel
|
| 84 |
Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis
|
Goelzer, Anne
|
|
2008
|
2 |
1 |
|
artikel
|
| 85 |
Regulatory network reconstruction using an integral additive model with flexible kernel functions
|
Novikov, Eugene
|
|
2008
|
2 |
1 |
|
artikel
|
| 86 |
RNA silencing can explain chlorotic infection patterns on plant leaves
|
Groenenboom, Marian AC
|
|
2008
|
2 |
1 |
|
artikel
|
| 87 |
Robust simplifications of multiscale biochemical networks
|
Radulescu, Ovidiu
|
|
2008
|
2 |
1 |
|
artikel
|
| 88 |
SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks
|
Dräger, Andreas
|
|
2008
|
2 |
1 |
|
artikel
|
| 89 |
Seeded Bayesian Networks: Constructing genetic networks from microarray data
|
Djebbari, Amira
|
|
2008
|
2 |
1 |
|
artikel
|
| 90 |
Short time-series microarray analysis: Methods and challenges
|
Wang, Xuewei
|
|
2008
|
2 |
1 |
|
artikel
|
| 91 |
Signal duration and the time scale dependence of signal integration in biochemical pathways
|
Locasale, Jason W
|
|
2008
|
2 |
1 |
|
artikel
|
| 92 |
Simulating in vitro transcriptional response of zinc homeostasis system in Escherichia coli
|
Cui, Jiangjun
|
|
2008
|
2 |
1 |
|
artikel
|
| 93 |
Stochastic analysis of the GAL genetic switch in Saccharomyces cerevisiae: Modeling and experiments reveal hierarchy in glucose repression
|
Prasad, Vinay
|
|
2008
|
2 |
1 |
|
artikel
|
| 94 |
Strong negative self regulation of Prokaryotic transcription factors increases the intrinsic noise of protein expression
|
Stekel, Dov J
|
|
2008
|
2 |
1 |
|
artikel
|
| 95 |
Structural similarity of genetically interacting proteins
|
Dror, Oranit
|
|
2008
|
2 |
1 |
|
artikel
|
| 96 |
Systematic reconstruction of TRANSPATH data into Cell System Markup Language
|
Nagasaki, Masao
|
|
2008
|
2 |
1 |
|
artikel
|
| 97 |
Systems analysis of quantitative shRNA-library screens identifies regulators of cell adhesion
|
Huang, XiaoDong
|
|
2008
|
2 |
1 |
|
artikel
|
| 98 |
targetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis
|
Raman, Karthik
|
|
2008
|
2 |
1 |
|
artikel
|
| 99 |
The dynamics and efficacy of antiviral RNA silencing: A model study
|
Groenenboom, Marian AC
|
|
2008
|
2 |
1 |
|
artikel
|
| 100 |
The effects of protein interactions, gene essentiality and regulatory regions on expression variation
|
Zhou, Linqi
|
|
2008
|
2 |
1 |
|
artikel
|
| 101 |
The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism
|
Nookaew, Intawat
|
|
2008
|
2 |
1 |
|
artikel
|
| 102 |
The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles
|
Durek, Pawel
|
|
2008
|
2 |
1 |
|
artikel
|
| 103 |
The regulatory network of E. coli metabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response
|
Samal, Areejit
|
|
2008
|
2 |
1 |
|
artikel
|
| 104 |
The Systems Biology Research Tool: evolvable open-source software
|
Wright, Jeremiah
|
|
2008
|
2 |
1 |
|
artikel
|
| 105 |
The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks
|
Hsing, Michael
|
|
2008
|
2 |
1 |
|
artikel
|
| 106 |
Three factors underlying incorrect in silico predictions of essential metabolic genes
|
Becker, Scott A
|
|
2008
|
2 |
1 |
|
artikel
|
| 107 |
Time-resolved metabolomics reveals metabolic modulation in rice foliage
|
Sato, Shigeru
|
|
2008
|
2 |
1 |
|
artikel
|
| 108 |
Transcription profiling of lung adenocarcinomas of c-myc-transgenic mice: Identification of the c-myc regulatory gene network
|
Reymann, Susanne
|
|
2008
|
2 |
1 |
|
artikel
|
| 109 |
Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle
|
Waardenberg, Ashley J
|
|
2008
|
2 |
1 |
|
artikel
|
| 110 |
Using genetic markers to orient the edges in quantitative trait networks: The NEO software
|
Aten, Jason E
|
|
2008
|
2 |
1 |
|
artikel
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