| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
Abundant protein domains occur in proportion to proteome size
|
Malek, Joel A
|
|
2001
|
|
9 |
p. research0039.1-research0039.5
|
artikel
|
| 2 |
A case study of the reproducibility of transcriptional reporter cell-based RNAi screens in Drosophila
|
DasGupta, Ramanuj
|
|
2007
|
|
9 |
|
artikel
|
| 3 |
A catalog of human cDNA expression clones and its application to structural genomics
|
Büssow, Konrad
|
|
2004
|
|
9 |
|
artikel
|
| 4 |
A cell surface interaction network of neural leucine-rich repeat receptors
|
Söllner, Christian
|
|
2009
|
|
9 |
|
artikel
|
| 5 |
A comparative analysis of exome capture
|
Parla, Jennifer S
|
|
2011
|
|
9 |
|
artikel
|
| 6 |
A computational method to predict genetically encoded rare amino acids in proteins
|
Chaudhuri, Barnali N
|
|
2005
|
|
9 |
|
artikel
|
| 7 |
A first-draft human protein-interaction map
|
Lehner, Ben
|
|
2004
|
|
9 |
|
artikel
|
| 8 |
A functional update of the Escherichia coli K-12 genome
|
Serres, Margrethe H
|
|
2001
|
|
9 |
p. research0035.1-research0035.7
|
artikel
|
| 9 |
A global survey identifies novel upstream components of the Ath5 neurogenic network
|
Souren, Marcel
|
|
2009
|
|
9 |
|
artikel
|
| 10 |
A molecular map of mesenchymal tumors
|
Henderson, Stephen R
|
|
2005
|
|
9 |
|
artikel
|
| 11 |
Analysis of variation at transcription factor binding sites in Drosophila and humans
|
Spivakov, Mikhail
|
|
2012
|
|
9 |
|
artikel
|
| 12 |
An Ambystoma mexicanum EST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating blastema cDNA libraries
|
Habermann, Bianca
|
|
2004
|
|
9 |
|
artikel
|
| 13 |
An ENU mutagenesis screen identifies novel and known genes involved in epigenetic processes in the mouse
|
Daxinger, Lucia
|
|
2013
|
|
9 |
|
artikel
|
| 14 |
A new non-linear normalization method for reducing variability in DNA microarray experiments
|
Workman, Christopher
|
|
2002
|
|
9 |
p. research0048.1-research0048.16
|
artikel
|
| 15 |
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
|
Reed, Jennifer L
|
|
2003
|
|
9 |
|
artikel
|
| 16 |
A rapid method to map mutations in Drosophila
|
Martin, Sophie G
|
|
2001
|
|
9 |
p. research0036.1-research0036.12
|
artikel
|
| 17 |
Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure
|
Muzzey, Dale
|
|
2013
|
|
9 |
|
artikel
|
| 18 |
A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data
|
Yau, Christopher
|
|
2010
|
|
9 |
|
artikel
|
| 19 |
Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis
|
Kleemann, Robert
|
|
2007
|
|
9 |
|
artikel
|
| 20 |
Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3
|
Frietze, Seth
|
|
2012
|
|
9 |
|
artikel
|
| 21 |
Characterization of heterotypic interaction effects in vitro to deconvolute global gene expression profiles in cancer
|
Buess, Martin
|
|
2007
|
|
9 |
|
artikel
|
| 22 |
Characterization of the yeast ionome: a genome-wide analysis of nutrient mineral and trace element homeostasis in Saccharomyces cerevisiae
|
Eide, David J
|
|
2005
|
|
9 |
|
artikel
|
| 23 |
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
|
Yip, Kevin Y
|
|
2012
|
|
9 |
|
artikel
|
| 24 |
Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium
|
Stabler, Richard A
|
|
2009
|
|
9 |
|
artikel
|
| 25 |
Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression
|
Wu, Jie
|
|
2006
|
|
9 |
|
artikel
|
| 26 |
Comparison of K+-channel genes within the genomes of Anopheles gambiae and Drosophila melanogaster
|
McCormack, Thomas J
|
|
2003
|
|
9 |
|
artikel
|
| 27 |
Comparison of solution-based exome capture methods for next generation sequencing
|
Sulonen, Anna-Maija
|
|
2011
|
|
9 |
|
artikel
|
| 28 |
Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes
|
Liu, Yang
|
|
2004
|
|
9 |
|
artikel
|
| 29 |
Comprehensive comparison of three commercial human whole-exome capture platforms
|
Asan,
|
|
2011
|
|
9 |
|
artikel
|
| 30 |
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
|
Rapaport, Franck
|
|
2013
|
|
9 |
|
artikel
|
| 31 |
Computational discovery of sense-antisense transcription in the human and mouse genomes
|
Shendure, Jay
|
|
2002
|
|
9 |
p. research0044.1-research0044.14
|
artikel
|
| 32 |
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura
|
Berman, Benjamin P
|
|
2004
|
|
9 |
|
artikel
|
| 33 |
Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila
|
Blanco, Enrique
|
|
2008
|
|
9 |
|
artikel
|
| 34 |
Correlation of proteome-wide changes with social immunity behaviors provides insight into resistance to the parasitic mite, Varroa destructor, in the honey bee (Apis mellifera)
|
Parker, Robert
|
|
2012
|
|
9 |
|
artikel
|
| 35 |
CpG content affects gene silencing in mice: evidence from novel transgenes
|
Chevalier-Mariette, Christine
|
|
2003
|
|
9 |
|
artikel
|
| 36 |
Cross-species cluster co-conservation: a new method for generating protein interaction networks
|
Karimpour-Fard, Anis
|
|
2007
|
|
9 |
|
artikel
|
| 37 |
DAVID: Database for Annotation, Visualization, and Integrated Discovery
|
Dennis, Glynn
|
|
2003
|
|
9 |
|
artikel
|
| 38 |
De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
|
DiGuistini, Scott
|
|
2009
|
|
9 |
|
artikel
|
| 39 |
Design and implementation of microarray gene expression markup language (MAGE-ML)
|
Spellman, Paul T
|
|
2002
|
|
9 |
p. research0046.1-research0046.9
|
artikel
|
| 40 |
DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data
|
Watson, Michael
|
|
2007
|
|
9 |
|
artikel
|
| 41 |
Different evolutionary patterns between young duplicate genes in the human genome
|
Zhang, Peng
|
|
2003
|
|
9 |
|
artikel
|
| 42 |
Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape
|
Day, Kenneth
|
|
2013
|
|
9 |
|
artikel
|
| 43 |
Differential gene expression in anatomical compartments of the human eye
|
Diehn, Jennifer J
|
|
2005
|
|
9 |
|
artikel
|
| 44 |
Discovery of estrogen receptor α target genes and response elements in breast tumor cells
|
Lin, Chin-Yo
|
|
2004
|
|
9 |
|
artikel
|
| 45 |
Drawing the tree of eukaryotic life based on the analysis of 2,269 manually annotated myosins from 328 species
|
Odronitz, Florian
|
|
2007
|
|
9 |
|
artikel
|
| 46 |
Dynamic cumulative activity of transcription factors as a mechanism of quantitative gene regulation
|
He, Feng
|
|
2007
|
|
9 |
|
artikel
|
| 47 |
Dynamic diversity of the tryptophan pathway in chlamydiae: reductive evolution and a novel operon for tryptophan recapture
|
Xie, Gary
|
|
2002
|
|
9 |
p. research0051.1-research0051.17
|
artikel
|
| 48 |
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
|
Morgan, Xochitl C
|
|
2012
|
|
9 |
|
artikel
|
| 49 |
Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis
|
Niranjan, Tejasvi S
|
|
2011
|
|
9 |
|
artikel
|
| 50 |
E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns
|
Urisman, Anatoly
|
|
2005
|
|
9 |
|
artikel
|
| 51 |
Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals
|
Chamary, JV
|
|
2005
|
|
9 |
|
artikel
|
| 52 |
Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life
|
Lobanov, Alexey V
|
|
2007
|
|
9 |
|
artikel
|
| 53 |
Evolutionary rate and gene expression across different brain regions
|
Tuller, Tamir
|
|
2008
|
|
9 |
|
artikel
|
| 54 |
Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ
|
Omelchenko, Marina V
|
|
2003
|
|
9 |
|
artikel
|
| 55 |
Exome sequencing identifies a missense mutation in Isl1 associated with low penetrance otitis media in dearisch mice
|
Hilton, Jennifer M
|
|
2011
|
|
9 |
|
artikel
|
| 56 |
Exome sequencing identifies a novel missense variant in RRM2B associated with autosomal recessive progressive external ophthalmoplegia
|
Takata, Atsushi
|
|
2011
|
|
9 |
|
artikel
|
| 57 |
Exon creation and establishment in human genes
|
Corvelo, André
|
|
2008
|
|
9 |
|
artikel
|
| 58 |
Expanding whole exome resequencing into non-human primates
|
Vallender, Eric J
|
|
2011
|
|
9 |
|
artikel
|
| 59 |
Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions
|
van Noort, Vera
|
|
2007
|
|
9 |
|
artikel
|
| 60 |
Fine mapping in tomato using microsynteny with the Arabidopsis genome: the Diageotropica (Dgt) locus
|
Oh, KwangChul
|
|
2002
|
|
9 |
p. research0049.1-research0049.11
|
artikel
|
| 61 |
First somatic mutation of E2F1 in a critical DNA binding residue discovered in well-differentiated papillary mesothelioma of the peritoneum
|
Yu, Willie
|
|
2011
|
|
9 |
|
artikel
|
| 62 |
Functional analysis of transcription factor binding sites in human promoters
|
Whiteld, Troy W
|
|
2012
|
|
9 |
|
artikel
|
| 63 |
Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions
|
Enright, Anton J
|
|
2001
|
|
9 |
p. research0034.1-research0034.7
|
artikel
|
| 64 |
Functional constraint and small insertions and deletions in the ENCODE regions of the human genome
|
Clark, Taane G
|
|
2007
|
|
9 |
|
artikel
|
| 65 |
Function-informed transcriptome analysis of Drosophila renal tubule
|
Wang, Jing
|
|
2004
|
|
9 |
|
artikel
|
| 66 |
Gene-expression profile comparisons distinguish seven organs of maize
|
Cho, Yangrae
|
|
2002
|
|
9 |
p. research0045.1-research0045.16
|
artikel
|
| 67 |
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function
|
Costello, James C
|
|
2009
|
|
9 |
|
artikel
|
| 68 |
Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
|
Frantz, Laurent AF
|
|
2013
|
|
9 |
|
artikel
|
| 69 |
Genome-wide analysis of intracellular pH reveals quantitative control of cell division rate by pHc in Saccharomyces cerevisiae
|
Orij, Rick
|
|
2012
|
|
9 |
|
artikel
|
| 70 |
Genome-wide analysis of mRNA decay patterns during early Drosophila development
|
Thomsen, Stefan
|
|
2010
|
|
9 |
|
artikel
|
| 71 |
Genome-wide deletion mutant analysis reveals genes required for respiratory growth, mitochondrial genome maintenance and mitochondrial protein synthesis in Saccharomyces cerevisiae
|
Merz, Sandra
|
|
2009
|
|
9 |
|
artikel
|
| 72 |
Genome-wide investigation reveals pathogen-specific and shared signatures in the response of Caenorhabditis elegans to infection
|
Wong, Daniel
|
|
2007
|
|
9 |
|
artikel
|
| 73 |
Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network
|
Linghu, Bolan
|
|
2009
|
|
9 |
|
artikel
|
| 74 |
Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia
|
Nordlund, Jessica
|
|
2013
|
|
9 |
|
artikel
|
| 75 |
Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere
|
Matilla, Miguel A
|
|
2007
|
|
9 |
|
artikel
|
| 76 |
Genomic features of Bordetella parapertussis clades with distinct host species specificity
|
Brinig, Mary M
|
|
2006
|
|
9 |
|
artikel
|
| 77 |
Global nucleosome occupancy in yeast
|
Bernstein, Bradley E
|
|
2004
|
|
9 |
|
artikel
|
| 78 |
High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans
|
Ramani, Arun K
|
|
2009
|
|
9 |
|
artikel
|
| 79 |
Human fetal neuroblast and neuroblastoma transcriptome analysis confirms neuroblast origin and highlights neuroblastoma candidate genes
|
De Preter, Katleen
|
|
2006
|
|
9 |
|
artikel
|
| 80 |
Human members of the eukaryotic protein kinase family
|
Kostich, Mitch
|
|
2002
|
|
9 |
p. research0043.1-research0043.12
|
artikel
|
| 81 |
Identification of cyanobacterial non-coding RNAs by comparative genome analysis
|
Axmann, Ilka M
|
|
2005
|
|
9 |
|
artikel
|
| 82 |
Identification of novel regulatory factor X (RFX) target genes by comparative genomics in Drosophila species
|
Laurençon, Anne
|
|
2007
|
|
9 |
|
artikel
|
| 83 |
Identification of novel stem cell markers using gap analysis of gene expression data
|
Krzyzanowski, Paul M
|
|
2007
|
|
9 |
|
artikel
|
| 84 |
Identification of secondary targets of N-containing bisphosphonates in mammalian cells via parallel competition analysis of the barcoded yeast deletion collection
|
Bivi, Nicoletta
|
|
2009
|
|
9 |
|
artikel
|
| 85 |
Improving identification of differentially expressed genes in microarray studies using information from public databases
|
Kim, Richard D
|
|
2004
|
|
9 |
|
artikel
|
| 86 |
Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach
|
Strong, Michael
|
|
2003
|
|
9 |
|
artikel
|
| 87 |
InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
|
Wang, Haidong
|
|
2007
|
|
9 |
|
artikel
|
| 88 |
Intraspecific variation of recombination rate in maize
|
Bauer, Eva
|
|
2013
|
|
9 |
|
artikel
|
| 89 |
Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae
|
Boyer, Jeanne
|
|
2004
|
|
9 |
|
artikel
|
| 90 |
Living the high life: high-altitude adaptation
|
Scheinfeldt, Laura B
|
|
2010
|
|
9 |
|
artikel
|
| 91 |
L2L: a simple tool for discovering the hidden significance in microarray expression data
|
Newman, John C
|
|
2005
|
|
9 |
|
artikel
|
| 92 |
Many LINE1 elements contribute to the transcriptome of human somatic cells
|
Rangwala, Sanjida H
|
|
2009
|
|
9 |
|
artikel
|
| 93 |
Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics
|
Sun, Jibin
|
|
2007
|
|
9 |
|
artikel
|
| 94 |
Microarray analysis of microRNA expression in the developing mammalian brain
|
Miska, Eric A
|
|
2004
|
|
9 |
|
artikel
|
| 95 |
Model-based Analysis of ChIP-Seq (MACS)
|
Zhang, Yong
|
|
2008
|
|
9 |
|
artikel
|
| 96 |
Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions
|
Snitkin, Evan S
|
|
2008
|
|
9 |
|
artikel
|
| 97 |
Modeling gene expression using chromatin features in various cellular contexts
|
Dong, Xianjun
|
|
2012
|
|
9 |
|
artikel
|
| 98 |
Modeling synthetic lethality
|
Le Meur, Nolwenn
|
|
2008
|
|
9 |
|
artikel
|
| 99 |
Molecular archeology of an SP100 splice variant revisited: dating the retrotranscription and Alu insertion events
|
Devor, Eric J
|
|
2001
|
|
9 |
p. research0040.1-research0040.6
|
artikel
|
| 100 |
mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer
|
Cheng, Chao
|
|
2009
|
|
9 |
|
artikel
|
| 101 |
Multiplatform genome-wide identification and modeling of functional human estrogen receptor binding sites
|
Vega, Vinsensius B
|
|
2006
|
|
9 |
|
artikel
|
| 102 |
Multiple effects govern endogenous retrovirus survival patterns in human gene introns
|
van de Lagemaat, Louie N
|
|
2006
|
|
9 |
|
artikel
|
| 103 |
Multi-species integrative biclustering
|
Waltman, Peter
|
|
2010
|
|
9 |
|
artikel
|
| 104 |
Mutation discovery in mice by whole exome sequencing
|
Fairfield, Heather
|
|
2011
|
|
9 |
|
artikel
|
| 105 |
NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria
|
Andrade, Miguel A
|
|
2002
|
|
9 |
p. research0047.1-research0047.5
|
artikel
|
| 106 |
NetGrep: fast network schema searches in interactomes
|
Banks, Eric
|
|
2008
|
|
9 |
|
artikel
|
| 107 |
Novel venom gene discovery in the platypus
|
Whittington, Camilla M
|
|
2010
|
|
9 |
|
artikel
|
| 108 |
Nucleosome deposition and DNA methylation at coding region boundaries
|
Choi, Jung Kyoon
|
|
2009
|
|
9 |
|
artikel
|
| 109 |
On the design of clone-based haplotyping
|
Lo, Christine
|
|
2013
|
|
9 |
|
artikel
|
| 110 |
On the species of origin: diagnosing the source of symbiotic transcripts
|
Hraber, Peter T
|
|
2001
|
|
9 |
p. research0037.1-research0037.14
|
artikel
|
| 111 |
Patterns of expansion and expression divergence in the plant polygalacturonase gene family
|
Kim, Joonyup
|
|
2006
|
|
9 |
|
artikel
|
| 112 |
PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification
|
Krishnamurthy, Nandini
|
|
2006
|
|
9 |
|
artikel
|
| 113 |
Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2
|
Marín-Béjar, Oskar
|
|
2013
|
|
9 |
|
artikel
|
| 114 |
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
|
Wang, Xiu-Jie
|
|
2004
|
|
9 |
|
artikel
|
| 115 |
Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation
|
Naville, Magali
|
|
2010
|
|
9 |
|
artikel
|
| 116 |
PRESTA: associating promoter sequences with information on gene expression
|
Mach, Václav
|
|
2002
|
|
9 |
p. research0050.1-research0050.7
|
artikel
|
| 117 |
PubNet: a flexible system for visualizing literature derived networks
|
Douglas, Shawn M
|
|
2005
|
|
9 |
|
artikel
|
| 118 |
PU.1 target genes undergo Tet2-coupled demethylation and DNMT3b-mediated methylation in monocyte-to-osteoclast differentiation
|
de la Rica, Lorenzo
|
|
2013
|
|
9 |
|
artikel
|
| 119 |
Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda2 protein
|
Bujnicki, Janusz M
|
|
2001
|
|
9 |
p. research0038.1-research0038.6
|
artikel
|
| 120 |
Reducing assembly complexity of microbial genomes with single-molecule sequencing
|
Koren, Sergey
|
|
2013
|
|
9 |
|
artikel
|
| 121 |
Reducing the exome search space for Mendelian diseases using genetic linkage analysis of exome genotypes
|
Smith, Katherine R
|
|
2011
|
|
9 |
|
artikel
|
| 122 |
Regional differences in dosage compensation on the chicken Z chromosome
|
Melamed, Esther
|
|
2007
|
|
9 |
|
artikel
|
| 123 |
RELATCH: relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations
|
Kim, Joonhoon
|
|
2012
|
|
9 |
|
artikel
|
| 124 |
Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions
|
Carrera, Javier
|
|
2009
|
|
9 |
|
artikel
|
| 125 |
Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression
|
Beane, Jennifer
|
|
2007
|
|
9 |
|
artikel
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