| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A clustering method for repeat analysis in DNA sequences
|
Volfovsky, Natalia
|
|
2001
|
|
8 |
p. research0027.1-research0027.11
|
artikel
|
| 2 |
A comparative proteomics resource: proteins of Arabidopsis thaliana
|
Li, Wilfred W
|
|
2003
|
|
8 |
|
artikel
|
| 3 |
A computational framework for boosting confidence in high-throughput protein-protein interaction datasets
|
Hosur, Raghavendra
|
|
2012
|
|
8 |
|
artikel
|
| 4 |
AFM 4.0: a toolbox for DNA microarray analysis
|
Breitkreutz, Bobby-Joe
|
|
2001
|
|
8 |
p. software0001.1-software0001.3
|
artikel
|
| 5 |
A gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers
|
Palmer, Nathan P
|
|
2012
|
|
8 |
|
artikel
|
| 6 |
A genome-wide approach to identify genetic loci with a signature of natural selection in the Irish population
|
Mattiangeli, Valeria
|
|
2006
|
|
8 |
|
artikel
|
| 7 |
A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon
|
Zhang, Jingyu
|
|
2013
|
|
8 |
|
artikel
|
| 8 |
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
|
Sugimoto, Yoichiro
|
|
2012
|
|
8 |
|
artikel
|
| 9 |
Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET
|
Mathur, Divya
|
|
2008
|
|
8 |
|
artikel
|
| 10 |
An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer
|
Teschendorff, Andrew E
|
|
2007
|
|
8 |
|
artikel
|
| 11 |
A phospho-proteomic screen identifies substrates of the checkpoint kinase Chk1
|
Blasius, Melanie
|
|
2011
|
|
8 |
|
artikel
|
| 12 |
A physical map of the bovine genome
|
Snelling, Warren M
|
|
2007
|
|
8 |
|
artikel
|
| 13 |
Assisted assembly: how to improve a de novo genome assembly by using related species
|
Gnerre, Sante
|
|
2009
|
|
8 |
|
artikel
|
| 14 |
A standard variation file format for human genome sequences
|
Reese, Martin G
|
|
2010
|
|
8 |
|
artikel
|
| 15 |
BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data
|
Saal, Lao H
|
|
2002
|
|
8 |
p. software0003.1-software0003.6
|
artikel
|
| 16 |
BreakTrans: uncovering the genomic architecture of gene fusions
|
Chen, Ken
|
|
2013
|
|
8 |
|
artikel
|
| 17 |
Call for an enzyme genomics initiative
|
Karp, Peter D
|
|
2004
|
|
8 |
|
artikel
|
| 18 |
Cistrome: an integrative platform for transcriptional regulation studies
|
Liu, Tao
|
|
2011
|
|
8 |
|
artikel
|
| 19 |
Cloud-scale RNA-sequencing differential expression analysis with Myrna
|
Langmead, Ben
|
|
2010
|
|
8 |
|
artikel
|
| 20 |
Cluster-Rasch models for microarray gene expression data
|
Li, Hongzhe
|
|
2001
|
|
8 |
p. research0031.1-research0031.13
|
artikel
|
| 21 |
Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species
|
Mitreva, Makedonka
|
|
2006
|
|
8 |
|
artikel
|
| 22 |
Combinatorial RNA interference in Caenorhabditis elegans reveals that redundancy between gene duplicates can be maintained for more than 80 million years of evolution
|
Tischler, Julia
|
|
2006
|
|
8 |
|
artikel
|
| 23 |
Community-wide analysis of microbial genome sequence signatures
|
Dick, Gregory J
|
|
2009
|
|
8 |
|
artikel
|
| 24 |
Comparative genomic analysis of the Tribolium immune system
|
Zou, Zhen
|
|
2007
|
|
8 |
|
artikel
|
| 25 |
Comparative transcriptome analysis of embryonic and adult stem cells with extended and limited differentiation capacity
|
Ulloa-Montoya, Fernando
|
|
2007
|
|
8 |
|
artikel
|
| 26 |
Comparison of complete nuclear receptor sets from the human, Caenorhabditis elegans and Drosophila genomes
|
Maglich, Jodi M
|
|
2001
|
|
8 |
p. research0029.1-research0029.7
|
artikel
|
| 27 |
Complexity, connectivity, and duplicability as barriers to lateral gene transfer
|
Wellner, Alon
|
|
2007
|
|
8 |
|
artikel
|
| 28 |
Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1
|
Bonneau, Richard
|
|
2004
|
|
8 |
|
artikel
|
| 29 |
Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
|
Betel, Doron
|
|
2010
|
|
8 |
|
artikel
|
| 30 |
Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development
|
Billon, Nathalie
|
|
2010
|
|
8 |
|
artikel
|
| 31 |
Depletion of T-cell intracellular antigen proteins promotes cell proliferation
|
Reyes, Raquel
|
|
2009
|
|
8 |
|
artikel
|
| 32 |
Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast
|
Wilhelm, Brian T
|
|
2011
|
|
8 |
|
artikel
|
| 33 |
Digital expression profiling of novel diatom transcripts provides insight into their biological functions
|
Maheswari, Uma
|
|
2010
|
|
8 |
|
artikel
|
| 34 |
Disruption and pseudoautosomal localization of the major histocompatibility complex in monotremes
|
Dohm, Juliane C
|
|
2007
|
|
8 |
|
artikel
|
| 35 |
Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery
|
Ji, Hong-Fang
|
|
2007
|
|
8 |
|
artikel
|
| 36 |
Duplication is more common among laterally transferred genes than among indigenous genes
|
Hooper, Sean D
|
|
2003
|
|
8 |
|
artikel
|
| 37 |
Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria
|
Corbino, Keith A
|
|
2005
|
|
8 |
|
artikel
|
| 38 |
Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors
|
Jones, Steven JM
|
|
2010
|
|
8 |
|
artikel
|
| 39 |
Evolution of selenium utilization traits
|
Romero, Héctor
|
|
2005
|
|
8 |
|
artikel
|
| 40 |
Exon expression profiling reveals stimulus-mediated exon use in neural cells
|
McKee, Adrienne E
|
|
2007
|
|
8 |
|
artikel
|
| 41 |
Expression profiling of Drosophila imaginal discs
|
Klebes, Ansgar
|
|
2002
|
|
8 |
p. research0038.1-research0038.16
|
artikel
|
| 42 |
Farnesyltransferase inhibitor treatment restores chromosome territory positions and active chromosome dynamics in Hutchinson-Gilford progeria syndrome cells
|
Mehta, Ishita S
|
|
2011
|
|
8 |
|
artikel
|
| 43 |
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
|
Goecks, Jeremy
|
|
2010
|
|
8 |
|
artikel
|
| 44 |
Gene expression regulation in the context of mouse interspecific mosaic genomes
|
L'Hôte, David
|
|
2008
|
|
8 |
|
artikel
|
| 45 |
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
|
Moreau, Hervé
|
|
2012
|
|
8 |
|
artikel
|
| 46 |
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development
|
Renfree, Marilyn B
|
|
2011
|
|
8 |
|
artikel
|
| 47 |
Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization
|
Menoret, Delphine
|
|
2013
|
|
8 |
|
artikel
|
| 48 |
Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells
|
Neri, Francesco
|
|
2013
|
|
8 |
|
artikel
|
| 49 |
Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase
|
Raiber, Eun-Ang
|
|
2012
|
|
8 |
|
artikel
|
| 50 |
Genome-wide promoter extraction and analysis in human, mouse, and rat
|
Xuan, Zhenyu
|
|
2005
|
|
8 |
|
artikel
|
| 51 |
Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates
|
Sim, Bernice Meng Qi
|
|
2010
|
|
8 |
|
artikel
|
| 52 |
Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans
|
Lawniczak, Mara KN
|
|
2008
|
|
8 |
|
artikel
|
| 53 |
Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells
|
Brodsky, Alexander S
|
|
2005
|
|
8 |
|
artikel
|
| 54 |
Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila
|
Adryan, Boris
|
|
2007
|
|
8 |
|
artikel
|
| 55 |
ggbio: an R package for extending the grammar of graphics for genomic data
|
Yin, Tengfei
|
|
2012
|
|
8 |
|
artikel
|
| 56 |
Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
|
Covington, Michael F
|
|
2008
|
|
8 |
|
artikel
|
| 57 |
Hybrid selection for sequencing pathogen genomes from clinical samples
|
Melnikov, Alexandre
|
|
2011
|
|
8 |
|
artikel
|
| 58 |
Identification of genes involved in ceramide-dependent neuronal apoptosis using cDNA arrays
|
Decraene, Charles
|
|
2002
|
|
8 |
p. research0042.1-research0042.22
|
artikel
|
| 59 |
Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors
|
de Souza, Gustavo A
|
|
2006
|
|
8 |
|
artikel
|
| 60 |
Identification of Schistosoma mansoni gender-associated gene transcripts by cDNA microarray profiling
|
Hoffmann, Karl F
|
|
2002
|
|
8 |
p. research0041.1-research0041.12
|
artikel
|
| 61 |
Identifying combinatorial regulation of transcription factors and binding motifs
|
Kato, Mamoru
|
|
2004
|
|
8 |
|
artikel
|
| 62 |
Improved base calling for the Illumina Genome Analyzer using machine learning strategies
|
Kircher, Martin
|
|
2009
|
|
8 |
|
artikel
|
| 63 |
Integrated miRNA and mRNA expression profiling of mouse mammary tumor models identifies miRNA signatures associated with mammary tumor lineage
|
Zhu, Min
|
|
2011
|
|
8 |
|
artikel
|
| 64 |
Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes
|
Gibon, Yves
|
|
2006
|
|
8 |
|
artikel
|
| 65 |
Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana
|
Keurentjes, Joost JB
|
|
2008
|
|
8 |
|
artikel
|
| 66 |
Intronic motif pairs cooperate across exons to promote pre-mRNA splicing
|
Ke, Shengdong
|
|
2010
|
|
8 |
|
artikel
|
| 67 |
Lessons learned from the initial sequencing of the pig genome: comparative analysis of an 8 Mb region of pig chromosome 17
|
Hart, Elizabeth A
|
|
2007
|
|
8 |
|
artikel
|
| 68 |
Measuring cell-type specific differential methylation in human brain tissue
|
Montaño, Carolina M
|
|
2013
|
|
8 |
|
artikel
|
| 69 |
Metabolic changes in schizophrenia and human brain evolution
|
Khaitovich, Philipp
|
|
2008
|
|
8 |
|
artikel
|
| 70 |
Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori
|
Xia, Qingyou
|
|
2007
|
|
8 |
|
artikel
|
| 71 |
MicroRNA profiling of the murine hematopoietic system
|
Monticelli, Silvia
|
|
2005
|
|
8 |
|
artikel
|
| 72 |
MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system
|
Kapsimali, Marika
|
|
2007
|
|
8 |
|
artikel
|
| 73 |
Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application
|
Li, Cheng
|
|
2001
|
|
8 |
p. research0032.1-research0032.11
|
artikel
|
| 74 |
Model-based analysis of two-color arrays (MA2C)
|
Song, Jun S
|
|
2007
|
|
8 |
|
artikel
|
| 75 |
Model selection and efficiency testing for normalization of cDNA microarray data
|
Futschik, Matthias
|
|
2004
|
|
8 |
|
artikel
|
| 76 |
Modular decomposition of protein-protein interaction networks
|
Gagneur, Julien
|
|
2004
|
|
8 |
|
artikel
|
| 77 |
Molecular evolution of neuropeptides in the genus Drosophila
|
Wegener, Christian
|
|
2008
|
|
8 |
|
artikel
|
| 78 |
MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs
|
Hamady, Micah
|
|
2008
|
|
8 |
|
artikel
|
| 79 |
MouseCyc: a curated biochemical pathways database for the laboratory mouse
|
Evsikov, Alexei V
|
|
2009
|
|
8 |
|
artikel
|
| 80 |
Multiple distinct small RNAs originate from the same microRNA precursors
|
Zhang, Weixiong
|
|
2010
|
|
8 |
|
artikel
|
| 81 |
Network motif analysis of a multi-mode genetic-interaction network
|
Taylor, R James
|
|
2007
|
|
8 |
|
artikel
|
| 82 |
Novel genes dramatically alter regulatory network topology in amphioxus
|
Zhang, Qing
|
|
2008
|
|
8 |
|
artikel
|
| 83 |
Novel origins of copy number variation in the dog genome
|
Berglund, Jonas
|
|
2012
|
|
8 |
|
artikel
|
| 84 |
Ontogeny, distribution and potential roles of 5-hydroxymethylcytosine in human liver function
|
Ivanov, Maxim
|
|
2013
|
|
8 |
|
artikel
|
| 85 |
Origins of chromosomal rearrangement hotspots in the human genome: evidence from the AZFa deletion hotspots
|
Hurles, Matthew E
|
|
2004
|
|
8 |
|
artikel
|
| 86 |
PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data
|
Corcoran, David L
|
|
2011
|
|
8 |
|
artikel
|
| 87 |
Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
|
Haddrill, Penelope R
|
|
2005
|
|
8 |
|
artikel
|
| 88 |
Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?
|
Gutiérrez, Rodrigo A
|
|
2004
|
|
8 |
|
artikel
|
| 89 |
POSaM: a fast, flexible, open-source, inkjet oligonucleotide synthesizer and microarrayer
|
Lausted, Christopher
|
|
2004
|
|
8 |
|
artikel
|
| 90 |
Preferential regulation of duplicated genes by microRNAs in mammals
|
Li, Jingjing
|
|
2008
|
|
8 |
|
artikel
|
| 91 |
Primate-specific evolution of an LDLR enhancer
|
Wang, Qian-fei
|
|
2006
|
|
8 |
|
artikel
|
| 92 |
PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs
|
Marsico, Annalisa
|
|
2013
|
|
8 |
|
artikel
|
| 93 |
Proteogenomic characterization and mapping of nucleosomes decoded by Brd and HP1 proteins
|
LeRoy, Gary
|
|
2012
|
|
8 |
|
artikel
|
| 94 |
Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules
|
Hodis, Eran
|
|
2008
|
|
8 |
|
artikel
|
| 95 |
PyCogent: a toolkit for making sense from sequence
|
Knight, Rob
|
|
2007
|
|
8 |
|
artikel
|
| 96 |
Quantifying the major mechanisms of recent gene duplications in the human and mouse genomes: a novel strategy to estimate gene duplication rates
|
Pan, Deng
|
|
2007
|
|
8 |
|
artikel
|
| 97 |
Quantitative genomics of locomotor behavior in Drosophila melanogaster
|
Jordan, Katherine W
|
|
2007
|
|
8 |
|
artikel
|
| 98 |
RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes
|
Sevin, Emeric W
|
|
2007
|
|
8 |
|
artikel
|
| 99 |
Recent segmental and gene duplications in the mouse genome
|
Cheung, Joseph
|
|
2003
|
|
8 |
|
artikel
|
| 100 |
Reduced selection leads to accelerated gene loss in Shigella
|
Hershberg, Ruth
|
|
2007
|
|
8 |
|
artikel
|
| 101 |
Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster
|
Locke, Devin P
|
|
2003
|
|
8 |
|
artikel
|
| 102 |
Sequencing and characterization of the FVB/NJ mouse genome
|
Wong, Kim
|
|
2012
|
|
8 |
|
artikel
|
| 103 |
Sex-specific expression of alternative transcripts in Drosophila
|
McIntyre, Lauren M
|
|
2006
|
|
8 |
|
artikel
|
| 104 |
Single-cell copy number variation detection
|
Cheng, Jiqiu
|
|
2011
|
|
8 |
|
artikel
|
| 105 |
Single cell transcriptomics of neighboring hyphae of Aspergillus niger
|
de Bekker, Charissa
|
|
2011
|
|
8 |
|
artikel
|
| 106 |
Species-specific shifts in centromere sequence composition are coincident with breakpoint reuse in karyotypically divergent lineages
|
Bulazel, Kira V
|
|
2007
|
|
8 |
|
artikel
|
| 107 |
Statistical assessment of the global regulatory role of histone acetylation in Saccharomyces cerevisiae
|
Yuan, Guo-Cheng
|
|
2006
|
|
8 |
|
artikel
|
| 108 |
Statistical methods and software for the analysis of highthroughput reverse genetic assays using flow cytometry readouts
|
Hahne, Florian
|
|
2006
|
|
8 |
|
artikel
|
| 109 |
Statistical modeling for selecting housekeeper genes
|
Szabo, Aniko
|
|
2004
|
|
8 |
|
artikel
|
| 110 |
Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species
|
Yassour, Moran
|
|
2010
|
|
8 |
|
artikel
|
| 111 |
Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits
|
Megraw, Molly
|
|
2013
|
|
8 |
|
artikel
|
| 112 |
Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes
|
Dong, Xianjun
|
|
2009
|
|
8 |
|
artikel
|
| 113 |
System-based proteomic analysis of the interferon response in human liver cells
|
Yan, Wei
|
|
2004
|
|
8 |
|
artikel
|
| 114 |
Tandem repeat copy-number variation in protein-coding regions of human genes
|
O'Dushlaine, Colm T
|
|
2005
|
|
8 |
|
artikel
|
| 115 |
The Adaptive Evolution Database (TAED)
|
Liberles, David A
|
|
2001
|
|
8 |
p. research0028.1-research0028.6
|
artikel
|
| 116 |
The contrasting roles of PPARδ and PPARγ in regulating the metabolic switch between oxidation and storage of fats in white adipose tissue
|
Roberts, Lee D
|
|
2011
|
|
8 |
|
artikel
|
| 117 |
The Dictyostelium genome encodes numerous RasGEFs with multiple biological roles
|
Wilkins, Andrew
|
|
2005
|
|
8 |
|
artikel
|
| 118 |
The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties
|
Luscombe, Nicholas M
|
|
2002
|
|
8 |
p. research0040.1-research0040.7
|
artikel
|
| 119 |
The emerging periplasm-localized subclass of AroQ chorismate mutases, exemplified by those from Salmonella typhimurium and Pseudomonas aeruginosa
|
Calhoun, David H
|
|
2001
|
|
8 |
p. research0030.1-research0030.16
|
artikel
|
| 120 |
The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus
|
Schwarz, Erich M
|
|
2013
|
|
8 |
|
artikel
|
| 121 |
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery
|
Laing, Roz
|
|
2013
|
|
8 |
|
artikel
|
| 122 |
The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2)
|
Hesketh, Andrew
|
|
2007
|
|
8 |
|
artikel
|
| 123 |
The head-regeneration transcriptome of the planarian Schmidtea mediterranea
|
Sandmann, Thomas
|
|
2011
|
|
8 |
|
artikel
|
| 124 |
The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells
|
Jørgensen, Helle F
|
|
2007
|
|
8 |
|
artikel
|
| 125 |
The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition
|
Cloonan, Nicole
|
|
2008
|
|
8 |
|
artikel
|
| 126 |
The missing graphical user interface for genomics
|
Schatz, Michael C
|
|
2010
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