| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks
|
Walsh, Ian
|
|
2009
|
9 |
1 |
|
artikel
|
| 2 |
A computational approach identifies two regions of Hepatitis C Virus E1 protein as interacting domains involved in viral fusion process
|
Bruni, Roberto
|
|
2009
|
9 |
1 |
|
artikel
|
| 3 |
A generic method for assignment of reliability scores applied to solvent accessibility predictions
|
Petersen, Bent
|
|
2009
|
9 |
1 |
|
artikel
|
| 4 |
Amyloidogenic determinants are usually not buried
|
Frousios, Kimon K
|
|
2009
|
9 |
1 |
|
artikel
|
| 5 |
Analysing the origin of long-range interactions in proteins using lattice models
|
Noivirt-Brik, Orly
|
|
2009
|
9 |
1 |
|
artikel
|
| 6 |
Analysis of proteins with the 'hot dog' fold: Prediction of function and identification of catalytic residues of hypothetical proteins
|
Pidugu, Lakshmi S
|
|
2009
|
9 |
1 |
|
artikel
|
| 7 |
Analysis of the impact of solvent on contacts prediction in proteins
|
Samsonov, Sergey A
|
|
2009
|
9 |
1 |
|
artikel
|
| 8 |
An automatic method for assessing structural importance of amino acid positions
|
Sadowski, Michael I
|
|
2009
|
9 |
1 |
|
artikel
|
| 9 |
An in silico study of the molecular basis of B-RAF activation and conformational stability
|
Fratev, Filip F
|
|
2009
|
9 |
1 |
|
artikel
|
| 10 |
An unexpected phosphate binding site in Glyceraldehyde 3-Phosphate Dehydrogenase: Crystal structures of apo, holo and ternary complex of Cryptosporidium parvum enzyme
|
Cook, William J
|
|
2009
|
9 |
1 |
|
artikel
|
| 11 |
Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm
|
Oyama, Takuji
|
|
2009
|
9 |
1 |
|
artikel
|
| 12 |
A tool for calculating binding-site residues on proteins from PDB structures
|
Hu, Jing
|
|
2009
|
9 |
1 |
|
artikel
|
| 13 |
Biochemical and structural characterization of alanine racemase from Bacillus anthracis (Ames)
|
Couñago, Rafael M
|
|
2009
|
9 |
1 |
|
artikel
|
| 14 |
Characterization of conserved properties of hemagglutinin of H5N1 and human influenza viruses: possible consequences for therapy and infection control
|
Veljkovic, Veljko
|
|
2009
|
9 |
1 |
|
artikel
|
| 15 |
Comparison of molecular dynamics and superfamily spaces of protein domain deformation
|
Velázquez-Muriel, Javier A
|
|
2009
|
9 |
1 |
|
artikel
|
| 16 |
Conformational changes and loose packing promote E. coli Tryptophanase cold lability
|
Kogan, Anna
|
|
2009
|
9 |
1 |
|
artikel
|
| 17 |
Conformational flexibility and molecular interactions of an archaeal homologue of the Shwachman-Bodian-Diamond syndrome protein
|
Ng, C Leong
|
|
2009
|
9 |
1 |
|
artikel
|
| 18 |
Conservation of structure and activity in Plasmodium purine nucleoside phosphorylases
|
Chaikuad, Apirat
|
|
2009
|
9 |
1 |
|
artikel
|
| 19 |
Context dependent reference states of solvent accessibility derived from native protein structures and assessed by predictability analysis
|
Singh, Hemajit
|
|
2009
|
9 |
1 |
|
artikel
|
| 20 |
CRYSTALP2: sequence-based protein crystallization propensity prediction
|
Kurgan, Lukasz
|
|
2009
|
9 |
1 |
|
artikel
|
| 21 |
Database of ligand-induced domain movements in enzymes
|
Qi, Guoying
|
|
2009
|
9 |
1 |
|
artikel
|
| 22 |
Development of an accurate classification system of proteins into structured and unstructured regions that uncovers novel structural domains: its application to human transcription factors
|
Fukuchi, Satoshi
|
|
2009
|
9 |
1 |
|
artikel
|
| 23 |
Discriminating the native structure from decoys using scoring functions based on the residue packing in globular proteins
|
Bahadur, Ranjit Prasad
|
|
2009
|
9 |
1 |
|
artikel
|
| 24 |
Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra
|
Sorzano, Carlos Oscar S
|
|
2009
|
9 |
1 |
|
artikel
|
| 25 |
Exon 6 of human JAG1 encodes a conserved structural unit
|
Pintar, Alessandro
|
|
2009
|
9 |
1 |
|
artikel
|
| 26 |
Exploring protein structural dissimilarity to facilitate structure classification
|
Jain, Pooja
|
|
2009
|
9 |
1 |
|
artikel
|
| 27 |
Functional correlation of bacterial LuxS with their quaternary associations: interface analysis of the structure networks
|
Bhattacharyya, Moitrayee
|
|
2009
|
9 |
1 |
|
artikel
|
| 28 |
Hydrogen bonding and packing density are factors most strongly connected to limiting sites of high flexibility in the 16S rRNA in the 30S ribosome
|
Huggins, Wayne
|
|
2009
|
9 |
1 |
|
artikel
|
| 29 |
Identification of hemagglutinin structural domain and polymorphisms which may modulate swine H1N1 interactions with human receptor
|
Veljkovic, Veljko
|
|
2009
|
9 |
1 |
|
artikel
|
| 30 |
Implications of the structure of human uridine phosphorylase 1 on the development of novel inhibitors for improving the therapeutic window of fluoropyrimidine chemotherapy
|
Roosild, Tarmo P
|
|
2009
|
9 |
1 |
|
artikel
|
| 31 |
Improved estimation of structure predictor quality
|
DeRonne, Kevin W
|
|
2009
|
9 |
1 |
|
artikel
|
| 32 |
Improving consensus contact prediction via server correlation reduction
|
Gao, Xin
|
|
2009
|
9 |
1 |
|
artikel
|
| 33 |
Improving consensus structure by eliminating averaging artifacts
|
KC, Dukka B
|
|
2009
|
9 |
1 |
|
artikel
|
| 34 |
Improving protein structure similarity searches using domain boundaries based on conserved sequence information
|
Thompson, Kenneth Evan
|
|
2009
|
9 |
1 |
|
artikel
|
| 35 |
Initial insight into the function of the lysosomal 66.3 kDa protein from mouse by means of X-ray crystallography
|
Lakomek, Kristina
|
|
2009
|
9 |
1 |
|
artikel
|
| 36 |
Interacting with the biomolecular solvent accessible surface via a haptic feedback device
|
Stocks, Matthew B
|
|
2009
|
9 |
1 |
|
artikel
|
| 37 |
Interaction of perfluorooctanoic acid with human serum albumin
|
Wu, Ling-Ling
|
|
2009
|
9 |
1 |
|
artikel
|
| 38 |
Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model
|
Zheng, Wenjun
|
|
2009
|
9 |
1 |
|
artikel
|
| 39 |
Low-resolution structural studies of human Stanniocalcin-1
|
Trindade, Daniel M
|
|
2009
|
9 |
1 |
|
artikel
|
| 40 |
Machine learning integration for predicting the effect of single amino acid substitutions on protein stability
|
Özen, Ayşegül
|
|
2009
|
9 |
1 |
|
artikel
|
| 41 |
Mesothelin, Stereocilin, and Otoancorin are predicted to have superhelical structures with ARM-type repeats
|
Sathyanarayana, Bangalore K
|
|
2009
|
9 |
1 |
|
artikel
|
| 42 |
Mirrors in the PDB: left-handed α-turns guide design with D-amino acids
|
Annavarapu, Srinivas
|
|
2009
|
9 |
1 |
|
artikel
|
| 43 |
Modeling of solvent-dependent conformational transitions in Burkholderia cepacia lipase
|
Trodler, Peter
|
|
2009
|
9 |
1 |
|
artikel
|
| 44 |
Modelling substrate specificity and enantioselectivity for lipases and esterases by substrate-imprinted docking
|
Juhl, P Benjamin
|
|
2009
|
9 |
1 |
|
artikel
|
| 45 |
Molecular models for intrastrand DNA G-quadruplexes
|
Fogolari, Federico
|
|
2009
|
9 |
1 |
|
artikel
|
| 46 |
Molecular models of human P-glycoprotein in two different catalytic states
|
Becker, Jean-Paul
|
|
2009
|
9 |
1 |
|
artikel
|
| 47 |
On the mechanism of autoinhibition of the RhoA-specific nucleotide exchange factor PDZRhoGEF
|
Zheng, Meiying
|
|
2009
|
9 |
1 |
|
artikel
|
| 48 |
Partially-supervised protein subclass discovery with simultaneous annotation of functional residues
|
Georgi, Benjamin
|
|
2009
|
9 |
1 |
|
artikel
|
| 49 |
Prediction of calcium-binding sites by combining loop-modeling with machine learning
|
Liu, Tianyun
|
|
2009
|
9 |
1 |
|
artikel
|
| 50 |
Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks
|
Andrabi, Munazah
|
|
2009
|
9 |
1 |
|
artikel
|
| 51 |
ProteinShader: illustrative rendering of macromolecules
|
Weber, Joseph R
|
|
2009
|
9 |
1 |
|
artikel
|
| 52 |
PTools: an opensource molecular docking library
|
Saladin, Adrien
|
|
2009
|
9 |
1 |
|
artikel
|
| 53 |
QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information
|
Benkert, Pascal
|
|
2009
|
9 |
1 |
|
artikel
|
| 54 |
Rational mutagenesis to support structure-based drug design: MAPKAP kinase 2 as a case study
|
Argiriadi, Maria A
|
|
2009
|
9 |
1 |
|
artikel
|
| 55 |
Relationship between chemical shift value and accessible surface area for all amino acid atoms
|
Vranken, Wim F
|
|
2009
|
9 |
1 |
|
artikel
|
| 56 |
Sequence and structural analysis of the Asp-box motif and Asp-box beta-propellers; a widespread propeller-type characteristic of the Vps10 domain family and several glycoside hydrolase families
|
Quistgaard, Esben M
|
|
2009
|
9 |
1 |
|
artikel
|
| 57 |
Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs
|
Marathe, Arvind
|
|
2009
|
9 |
1 |
|
artikel
|
| 58 |
Solution structure of the Equine Infectious Anemia Virus p9 protein: a rationalization of its different ALIX binding requirements compared to the analogous HIV-p6 protein
|
Sharma, Alok
|
|
2009
|
9 |
1 |
|
artikel
|
| 59 |
Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA – Implications for the catalytic mechanism of parvulins
|
Heikkinen, Outi
|
|
2009
|
9 |
1 |
|
artikel
|
| 60 |
Splitting statistical potentials into meaningful scoring functions: Testing the prediction of near-native structures from decoy conformations
|
Aloy, Patrick
|
|
2009
|
9 |
1 |
|
artikel
|
| 61 |
Structural and functional characteristics of xenavidin, the first frog avidin from Xenopus tropicalis
|
Määttä, Juha AE
|
|
2009
|
9 |
1 |
|
artikel
|
| 62 |
Structural and phylogenetic analysis of a conserved actinobacteria-specific protein (ASP1; SCO1997) from Streptomyces coelicolor
|
Gao, Beile
|
|
2009
|
9 |
1 |
|
artikel
|
| 63 |
Structural effects of clinically observed mutations in JAK2 exons 13-15: comparison with V617F and exon 12 mutations
|
Lee, Tai-Sung
|
|
2009
|
9 |
1 |
|
artikel
|
| 64 |
Structural insights into the substrate tunnel of Saccharomyces cerevisiae carbonic anhydrase Nce103
|
Teng, Yan-Bin
|
|
2009
|
9 |
1 |
|
artikel
|
| 65 |
Structural pattern matching of nonribosomal peptides
|
Caboche, Ségolène
|
|
2009
|
9 |
1 |
|
artikel
|
| 66 |
Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis
|
Csaba, Gergely
|
|
2009
|
9 |
1 |
|
artikel
|
| 67 |
The crystal structure of Haloferax volcanii proliferating cell nuclear antigen reveals unique surface charge characteristics due to halophilic adaptation
|
Winter, Jody A
|
|
2009
|
9 |
1 |
|
artikel
|
| 68 |
The cyanobacterial cell division factor Ftn6 contains an N-terminal DnaD-like domain
|
Marbouty, Martial
|
|
2009
|
9 |
1 |
|
artikel
|
| 69 |
The glycine brace: a component of Rab, Rho, and Ran GTPases associated with hinge regions of guanine- and phosphate-binding loops
|
Neuwald, Andrew F
|
|
2009
|
9 |
1 |
|
artikel
|
| 70 |
The Sam domain of the lipid phosphatase Ship2 adopts a common model to interact with Arap3-Sam and EphA2-Sam
|
Leone, Marilisa
|
|
2009
|
9 |
1 |
|
artikel
|
| 71 |
The structural and functional determinants of the Axin and Dishevelled DIX domains
|
Ehebauer, Matthias T
|
|
2009
|
9 |
1 |
|
artikel
|
| 72 |
The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes
|
Chang, Changsoo
|
|
2009
|
9 |
1 |
|
artikel
|
| 73 |
The structure of the leukemia drug imatinib bound to human quinone reductase 2 (NQO2)
|
Winger, Jonathan A
|
|
2009
|
9 |
1 |
|
artikel
|
| 74 |
Three dimensional shape comparison of flexible proteins using the local-diameter descriptor
|
Fang, Yi
|
|
2009
|
9 |
1 |
|
artikel
|
| 75 |
TIM-Finder: A new method for identifying TIM-barrel proteins
|
Si, Jing-Na
|
|
2009
|
9 |
1 |
|
artikel
|
| 76 |
Universal partitioning of the hierarchical fold network of 50-residue segments in proteins
|
Ito, Jun-ichi
|
|
2009
|
9 |
1 |
|
artikel
|
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