| no |
title |
author |
magazine |
year |
volume |
issue |
page(s) |
type |
| 1 |
A comprehensive analysis of non-sequential alignments between all protein structures
|
Abyzov, Alexej
|
|
2007
|
7 |
1 |
|
article
|
| 2 |
A generalized analysis of hydrophobic and loop clusters within globular protein sequences
|
Eudes, Richard
|
|
2007
|
7 |
1 |
|
article
|
| 3 |
Antibody-protein interactions: benchmark datasets and prediction tools evaluation
|
Ponomarenko, Julia V
|
|
2007
|
7 |
1 |
|
article
|
| 4 |
A previously unobserved conformation for the human Pex5p receptor suggests roles for intrinsic flexibility and rigid domain motions in ligand binding
|
Stanley, Will A
|
|
2007
|
7 |
1 |
|
article
|
| 5 |
A silent H-bond can be mutationally activated for high-affinity interaction of BMP-2 and activin type IIB receptor
|
Weber, Dionys
|
|
2007
|
7 |
1 |
|
article
|
| 6 |
Atomic hydration potentials using a Monte Carlo Reference State (MCRS) for protein solvation modeling
|
Rakhmanov, Sergei V
|
|
2007
|
7 |
1 |
|
article
|
| 7 |
Binding induced conformational changes of proteins correlate with their intrinsic fluctuations: a case study of antibodies
|
Keskin, Ozlem
|
|
2007
|
7 |
1 |
|
article
|
| 8 |
Binding of Sudan II and IV to lecithin liposomes and E. coli membranes: insights into the toxicity of hydrophobic azo dyes
|
Li, Lu
|
|
2007
|
7 |
1 |
|
article
|
| 9 |
Cation induced differential effect on structural and functional properties of Mycobacterium tuberculosis α-Isopropylmalate synthase
|
Singh, Kulwant
|
|
2007
|
7 |
1 |
|
article
|
| 10 |
Characterization of a human coagulation factor Xa-binding site on Viperidae snake venom phospholipases A2 by affinity binding studies and molecular bioinformatics
|
Faure, Grazyna
|
|
2007
|
7 |
1 |
|
article
|
| 11 |
Characterizing structural features of cuticle-degrading proteases from fungi by molecular modeling
|
Liu, Shu-Qun
|
|
2007
|
7 |
1 |
|
article
|
| 12 |
Comparative Analysis of Protein Structure Alignments
|
Mayr, Gabriele
|
|
2007
|
7 |
1 |
|
article
|
| 13 |
Computational modeling of protein mutant stability: analysis and optimization of statistical potentials and structural features reveal insights into prediction model development
|
Parthiban, Vijaya
|
|
2007
|
7 |
1 |
|
article
|
| 14 |
Conformational study of the protegrin-1 (PG-1) dimer interaction with lipid bilayers and its effect
|
Jang, Hyunbum
|
|
2007
|
7 |
1 |
|
article
|
| 15 |
Crystallographic characterization of two novel crystal forms of human insulin induced by chaotropic agents and a shift in pH
|
Norrman, Mathias
|
|
2007
|
7 |
1 |
|
article
|
| 16 |
Crystal structure of a blue laccase from Lentinus tigrinus: evidences for intermediates in the molecular oxygen reductive splitting by multicopper oxidases
|
Ferraroni, Marta
|
|
2007
|
7 |
1 |
|
article
|
| 17 |
Crystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties
|
Byun, Jung-Sue
|
|
2007
|
7 |
1 |
|
article
|
| 18 |
Crystal structure of Leishmania tarentolae hypoxanthine-guanine phosphoribosyltransferase
|
Monzani, Paulo S
|
|
2007
|
7 |
1 |
|
article
|
| 19 |
Crystal structure of Saccharomyces cerevisiae 6-phosphogluconate dehydrogenase Gnd1
|
He, Weiwei
|
|
2007
|
7 |
1 |
|
article
|
| 20 |
Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
|
Schormann, Norbert
|
|
2007
|
7 |
1 |
|
article
|
| 21 |
Crystal structures of an Extracytoplasmic Solute Receptor from a TRAP transporter in its open and closed forms reveal a helix-swapped dimer requiring a cation for α-keto acid binding
|
Gonin, Sophie
|
|
2007
|
7 |
1 |
|
article
|
| 22 |
Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+
|
Nascimento, Alessandro S
|
|
2007
|
7 |
1 |
|
article
|
| 23 |
Differential scanning calorimetry study of glycerinated rabbit psoas muscle fibres in intermediate state of ATP hydrolysis
|
Dergez, Timea
|
|
2007
|
7 |
1 |
|
article
|
| 24 |
Dimerization of inositol monophosphatase Mycobacterium tuberculosis SuhB is not constitutive, but induced by binding of the activator Mg2+
|
Brown, Alistair K
|
|
2007
|
7 |
1 |
|
article
|
| 25 |
Distinct energetics and closing pathways for DNA polymerase β with 8-oxoG template and different incoming nucleotides
|
Wang, Yanli
|
|
2007
|
7 |
1 |
|
article
|
| 26 |
Energetics of the protein-DNA-water interaction
|
Spyrakis, Francesca
|
|
2007
|
7 |
1 |
|
article
|
| 27 |
Engineering of PA-IIL lectin from Pseudomonas aeruginosa – Unravelling the role of the specificity loop for sugar preference
|
Adam, Jan
|
|
2007
|
7 |
1 |
|
article
|
| 28 |
Evaluation of the structural quality of modeled proteins by using globularity criteria
|
Costantini, Susan
|
|
2007
|
7 |
1 |
|
article
|
| 29 |
Fragment-based identification of determinants of conformational and spectroscopic change at the ricin active site
|
Carra, John H
|
|
2007
|
7 |
1 |
|
article
|
| 30 |
Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone
|
Ramaswamy, Amutha
|
|
2007
|
7 |
1 |
|
article
|
| 31 |
Glutathione mediated regulation of oligomeric structure and functional activity of Plasmodium falciparum glutathione S-transferase
|
Tripathi, Timir
|
|
2007
|
7 |
1 |
|
article
|
| 32 |
Grb7 SH2 domain structure and interactions with a cyclic peptide inhibitor of cancer cell migration and proliferation
|
Porter, Corrine J
|
|
2007
|
7 |
1 |
|
article
|
| 33 |
High resolution crystal structure of PedB: a structural basis for the classification of pediocin-like immunity proteins
|
Kim, In-Kwon
|
|
2007
|
7 |
1 |
|
article
|
| 34 |
Homology modeling of major intrinsic proteins in rice, maize and Arabidopsis: comparative analysis of transmembrane helix association and aromatic/arginine selectivity filters
|
Bansal, Anjali
|
|
2007
|
7 |
1 |
|
article
|
| 35 |
Identification of DNA-binding protein target sequences by physical effective energy functions: free energy analysis of lambda repressor-DNA complexes.
|
Moroni, Elisabetta
|
|
2007
|
7 |
1 |
|
article
|
| 36 |
In silico screening of mutational effects on enzyme-proteic inhibitor affinity: a docking-based approach
|
Dell'Orco, Daniele
|
|
2007
|
7 |
1 |
|
article
|
| 37 |
Mechanisms for stabilisation and the maintenance of solubility in proteins from thermophiles
|
Greaves, Richard B
|
|
2007
|
7 |
1 |
|
article
|
| 38 |
Metal ion-dependent, reversible, protein filament formation by designed beta-roll polypeptides
|
Scotter, Andrew J
|
|
2007
|
7 |
1 |
|
article
|
| 39 |
Molecular dynamics simulation of human LOX-1 provides an explanation for the lack of OxLDL binding to the Trp150Ala mutant
|
Falconi, Mattia
|
|
2007
|
7 |
1 |
|
article
|
| 40 |
Monte Carlo-energy minimization of correolide in the Kv1.3 channel: possible role of potassium ion in ligand-receptor interactions
|
Bruhova, Iva
|
|
2007
|
7 |
1 |
|
article
|
| 41 |
Neutral evolution of Protein-protein interactions: a computational study using simple models
|
Noirel, Josselin
|
|
2007
|
7 |
1 |
|
article
|
| 42 |
NMR and X-ray analysis of structural additivity in metal binding site-swapped hybrids of rubredoxin
|
LeMaster, David M
|
|
2007
|
7 |
1 |
|
article
|
| 43 |
NMR spectroscopic and analytical ultracentrifuge analysis of membrane protein detergent complexes
|
Maslennikov, Innokentiy
|
|
2007
|
7 |
1 |
|
article
|
| 44 |
(NZ)CH...O Contacts assist crystallization of a ParB-like nuclease
|
Shaw, Neil
|
|
2007
|
7 |
1 |
|
article
|
| 45 |
Observation of glycine zipper and unanticipated occurrence of ambidextrous helices in the crystal structure of a chiral undecapeptide
|
Acharya, Rudresh
|
|
2007
|
7 |
1 |
|
article
|
| 46 |
Occurrence of protein structure elements in conserved sequence regions
|
Sitbon, Einat
|
|
2007
|
7 |
1 |
|
article
|
| 47 |
On the origin of the histone fold
|
Alva, Vikram
|
|
2007
|
7 |
1 |
|
article
|
| 48 |
Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs
|
Chen, Ke
|
|
2007
|
7 |
1 |
|
article
|
| 49 |
Protein homologous cores and loops: important clues to evolutionary relationships between structurally similar proteins
|
Madej, Thomas
|
|
2007
|
7 |
1 |
|
article
|
| 50 |
Protein structure prediction by all-atom free-energy refinement
|
Verma, Abhinav
|
|
2007
|
7 |
1 |
|
article
|
| 51 |
Quaternary structure of Artemia haemoglobin II: analysis of T and C polymer alignment and interpolymer interface
|
Chyou, David T
|
|
2007
|
7 |
1 |
|
article
|
| 52 |
Rappertk: a versatile engine for discrete restraint-based conformational sampling of macromolecules
|
Gore, Swanand P
|
|
2007
|
7 |
1 |
|
article
|
| 53 |
Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches
|
Knizewski, Lukasz
|
|
2007
|
7 |
1 |
|
article
|
| 54 |
Scoring predictive models using a reduced representation of proteins: model and energy definition
|
Fogolari, Federico
|
|
2007
|
7 |
1 |
|
article
|
| 55 |
Search for allosteric disulfide bonds in NMR structures
|
Schmidt, Bryan
|
|
2007
|
7 |
1 |
|
article
|
| 56 |
Self-assembly of human latexin into amyloid-like oligomers
|
Pallarés, Irantzu
|
|
2007
|
7 |
1 |
|
article
|
| 57 |
Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network
|
Malik, Adeel
|
|
2007
|
7 |
1 |
|
article
|
| 58 |
Solution structure of the second bromodomain of Brd2 and its specific interaction with acetylated histone tails
|
Huang, Hongda
|
|
2007
|
7 |
1 |
|
article
|
| 59 |
Spectrum of disease-causing mutations in protein secondary structures
|
Khan, Sofia
|
|
2007
|
7 |
1 |
|
article
|
| 60 |
Structural analysis of inhibition of E. coli methionine aminopeptidase: implication of loop adaptability in selective inhibition of bacterial enzymes
|
Ma, Ze-Qiang
|
|
2007
|
7 |
1 |
|
article
|
| 61 |
Structural analysis of the carboxy terminal PH domain of pleckstrin bound to D-myo-inositol 1,2,3,5,6-pentakisphosphate
|
Jackson, Sean G
|
|
2007
|
7 |
1 |
|
article
|
| 62 |
Structural disorder promotes assembly of protein complexes
|
Hegyi, Hedi
|
|
2007
|
7 |
1 |
|
article
|
| 63 |
Structural footprinting in protein structure comparison: the impact of structural fragments
|
Zotenko, Elena
|
|
2007
|
7 |
1 |
|
article
|
| 64 |
Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
|
Ferraro, Daniel J
|
|
2007
|
7 |
1 |
|
article
|
| 65 |
Structure and characterization of a novel chicken biotin-binding protein A (BBP-A)
|
Hytönen, Vesa P
|
|
2007
|
7 |
1 |
|
article
|
| 66 |
Structure of a lectin from Canavalia gladiata seeds: new structural insights for old molecules
|
Delatorre, Plínio
|
|
2007
|
7 |
1 |
|
article
|
| 67 |
Structure of Arabidopsis thaliana 5-methylthioribose kinase reveals a more occluded active site than its bacterial homolog
|
Ku, Shao-Yang
|
|
2007
|
7 |
1 |
|
article
|
| 68 |
Structure of α-conotoxin BuIA: influences of disulfide connectivity on structural dynamics
|
Jin, Ai-Hua
|
|
2007
|
7 |
1 |
|
article
|
| 69 |
Structure of the dimeric N-glycosylated form of fungal β-N-acetylhexosaminidase revealed by computer modeling, vibrational spectroscopy, and biochemical studies
|
Ettrich, Rüdiger
|
|
2007
|
7 |
1 |
|
article
|
| 70 |
Structure, substrate recognition and reactivity of Leishmania major mevalonate kinase
|
Sgraja, Tanja
|
|
2007
|
7 |
1 |
|
article
|
| 71 |
The binding site for neohesperidin dihydrochalcone at the human sweet taste receptor
|
Winnig, Marcel
|
|
2007
|
7 |
1 |
|
article
|
| 72 |
The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family
|
Burman, Julia D
|
|
2007
|
7 |
1 |
|
article
|
| 73 |
The high-resolution NMR structure of the R21A Spc-SH3:P41 complex: Understanding the determinants of binding affinity by comparison with Abl-SH3
|
Casares, Salvador
|
|
2007
|
7 |
1 |
|
article
|
| 74 |
The NMR structure of the murine DLC2 SAM domain reveals a variant fold that is similar to a four-helix bundle
|
Kwan, Jamie J
|
|
2007
|
7 |
1 |
|
article
|
| 75 |
The role of hydrophobic interactions in positioning of peripheral proteins in membranes
|
Lomize, Andrei L
|
|
2007
|
7 |
1 |
|
article
|
| 76 |
The structure of mollusc larval shells formed in the presence of the chitin synthase inhibitor Nikkomycin Z
|
Schönitzer, Veronika
|
|
2007
|
7 |
1 |
|
article
|
| 77 |
The structure of Mycobacteria 2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase, an essential enzyme, provides a platform for drug discovery
|
Buetow, Lori
|
|
2007
|
7 |
1 |
|
article
|
| 78 |
Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field
|
Kmiecik, Sebastian
|
|
2007
|
7 |
1 |
|
article
|
| 79 |
Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily
|
Ibryashkina, Elena M
|
|
2007
|
7 |
1 |
|
article
|
| 80 |
Tyr66 acts as a conformational switch in the closed-to-open transition of the SHP-2 N-SH2-domain phosphotyrosine-peptide binding cleft
|
Guvench, Olgun
|
|
2007
|
7 |
1 |
|
article
|
| 81 |
Using molecular principal axes for structural comparison: determining the tertiary changes of a FAB antibody domain induced by antigenic binding
|
Silverman, B David
|
|
2007
|
7 |
1 |
|
article
|
| 82 |
X-ray sequence and crystal structure of luffaculin 1, a novel type 1 ribosome-inactivating protein
|
Hou, Xiaomin
|
|
2007
|
7 |
1 |
|
article
|
| 83 |
X-ray structures of Na-GST-1 and Na-GST-2 two glutathione s-transferase from the human hookworm Necator americanus
|
Asojo, Oluwatoyin A
|
|
2007
|
7 |
1 |
|
article
|
| 84 |
X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family
|
Tyagi, Rajiv
|
|
2007
|
7 |
1 |
|
article
|
Journal description