Digitale Bibliotheek
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                             485 gevonden resultaten
nr titel auteur tijdschrift jaar jaarg. afl. pagina('s) type
1 A Bayesian nonparametric method for prediction in EST analysis Lijoi, Antonio
2007
8 1 artikel
2 Ab initio identification of human microRNAs based on structure motifs Brameier, Markus
2007
8 1 artikel
3 Absolute estimation of initial concentrations of amplicon in a real-time RT-PCR process Smith, Marjo V
2007
8 1 artikel
4 Accelerated search for biomolecular network models to interpret high-throughput experimental data Datta, Suman
2007
8 1 artikel
5 Accuracy of structure-based sequence alignment of automatic methods Kim, Changhoon
2007
8 1 artikel
6 Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization Bauer, Markus
2007
8 1 artikel
7 Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information Pollastri, Gianluca
2007
8 1 artikel
8 A cis-regulatory logic simulator Zeigler, Robert D
2007
8 1 artikel
9 A comparative study of S/MAR prediction tools Evans, Kenneth
2007
8 1 artikel
10 A comparison of Affymetrix gene expression arrays Robinson, Mark D
2007
8 1 artikel
11 A comprehensive evaluation of SAM, the SAM R-package and a simple modification to improve its performance Zhang, Shunpu
2007
8 1 artikel
12 A comprehensive system for evaluation of remote sequence similarity detection Qi, Yuan
2007
8 1 artikel
13 A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana Pertea, Mihaela
2007
8 1 artikel
14 A constrained polynomial regression procedure for estimating the local False Discovery Rate Dalmasso, Cyril
2007
8 1 artikel
15 A cross-species alignment tool (CAT) Li, Heng
2007
8 1 artikel
16 Additive risk survival model with microarray data Ma, Shuangge
2007
8 1 artikel
17 A domain-based approach to predict protein-protein interactions Singhal, Mudita
2007
8 1 artikel
18 A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments Robinson, Mark D
2007
8 1 artikel
19 A feature selection approach for identification of signature genes from SAGE data Barrera, Junior
2007
8 1 artikel
20 AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip™ expression arrays with respect to SNPs Kumari, Sunita
2007
8 1 artikel
21 A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array Yu, Tianwei
2007
8 1 artikel
22 A framework for significance analysis of gene expression data using dimension reduction methods Gidskehaug, Lars
2007
8 1 artikel
23 A full Bayesian hierarchical mixture model for the variance of gene differential expression Manda, Samuel OM
2007
8 1 artikel
24 A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL Besnier, Francois
2007
8 1 artikel
25 A general strategy to determine the congruence between a hierarchical and a non-hierarchical classification Marco, Antonio
2007
8 1 artikel
26 AGGRESCAN: a server for the prediction and evaluation of "hot spots" of aggregation in polypeptides Conchillo-Solé, Oscar
2007
8 1 artikel
27 A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays Lamy, Philippe
2007
8 1 artikel
28 A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality Hart, G Traver
2007
8 1 artikel
29 A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks Samant, Asawari
2007
8 1 artikel
30 A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments Choi, Hyungwon
2007
8 1 artikel
31 Algebraic correction methods for computational assessment of clone overlaps in DNA fingerprint mapping Wendl, Michael C
2007
8 1 artikel
32 A machine learning approach for the identification of odorant binding proteins from sequence-derived properties Pugalenthi, Ganesan
2007
8 1 artikel
33 A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures Popadin, Konstantin Yu
2007
8 1 artikel
34 A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data Xu, Hua
2007
8 1 artikel
35 A meta-data based method for DNA microarray imputation Jörnsten, Rebecka
2007
8 1 artikel
36 A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression data Thomas, Reuben
2007
8 1 artikel
37 A multiresolution approach to automated classification of protein subcellular location images Chebira, Amina
2007
8 1 artikel
38 An adaptive bin framework search method for a beta-sheet protein homopolymer model Shmygelska, Alena
2007
8 1 artikel
39 Analysis and prediction of antibacterial peptides Lata, Sneh
2007
8 1 artikel
40 Analysis of feedback loops and robustness in network evolution based on Boolean models Kwon, Yung-Keun
2007
8 1 artikel
41 Analysis of probe level patterns in Affymetrix microarray data Cambon, Alexander C
2007
8 1 artikel
42 Analysis of the role of retrotransposition in gene evolution in vertebrates Yu, Zhan
2007
8 1 artikel
43 Analysis on multi-domain cooperation for predicting protein-protein interactions Wang, Rui-Sheng
2007
8 1 artikel
44 An efficient grid layout algorithm for biological networks utilizing various biological attributes Kojima, Kaname
2007
8 1 artikel
45 An efficient pseudomedian filter for tiling microrrays Royce, Thomas E
2007
8 1 artikel
46 A network perspective on the topological importance of enzymes and their phylogenetic conservation Liu, Wei-chung
2007
8 1 artikel
47 An evolutionary method for learning HMM structure: prediction of protein secondary structure Won, Kyoung-Jae
2007
8 1 artikel
48 A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants de la Grange, Pierre
2007
8 1 artikel
49 An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network Holden, Brian J
2007
8 1 artikel
50 Annotation and query of tissue microarray data using the NCI Thesaurus Shah, Nigam H
2007
8 1 artikel
51 An open source infrastructure for managing knowledge and finding potential collaborators in a domain-specific subset of PubMed, with an example from human genome epidemiology Yu, Wei
2007
8 1 artikel
52 A novel approach to detect hot-spots in large-scale multivariate data Wu, Jianhua
2007
8 1 artikel
53 A novel approach to sequence validating protein expression clones with automated decision making Taycher, Elena
2007
8 1 artikel
54 A novel ensemble learning method for de novo computational identification of DNA binding sites Chakravarty, Arijit
2007
8 1 artikel
55 antiCODE: a natural sense-antisense transcripts database Yin, Yifei
2007
8 1 artikel
56 Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation Klee, Kathrin
2007
8 1 artikel
57 Application of a correlation correction factor in a microarray cross-platform reproducibility study Archer, Kellie J
2007
8 1 artikel
58 Application of amino acid occurrence for discriminating different folding types of globular proteins Taguchi, Y-h
2007
8 1 artikel
59 Applying negative rule mining to improve genome annotation Artamonova, Irena I
2007
8 1 artikel
60 A procedure for identifying homologous alternative splicing events Talavera, David
2007
8 1 artikel
61 A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient Llaneras, Francisco
2007
8 1 artikel
62 A replica exchange Monte Carlo algorithm for protein folding in the HP model Thachuk, Chris
2007
8 1 artikel
63 A response to Yu et al. "A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array", BMC Bioinformatics 2007, 8: 145 Rueda, Oscar M
2007
8 1 artikel
64 A robust measure of correlation between two genes on a microarray Hardin, Johanna
2007
8 1 artikel
65 Artificial neural network models for prediction of intestinal permeability of oligopeptides Jung, Eunkyoung
2007
8 1 artikel
66 ASH structure alignment package: Sensitivity and selectivity in domain classification Standley, Daron M
2007
8 1 artikel
67 ASMPKS: an analysis system for modular polyketide synthases Tae, Hongseok
2007
8 1 artikel
68 Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family Livesay, Dennis R
2007
8 1 artikel
69 Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data Baross, Ágnes
2007
8 1 artikel
70 A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experiments Larsen, Peter
2007
8 1 artikel
71 A structural analysis of in vitro catalytic activities of hammerhead ribozymes Shao, Yu
2007
8 1 artikel
72 A survey of orphan enzyme activities Pouliot, Yannick
2007
8 1 artikel
73 A systematic approach to detecting transcription factors in response to environmental stresses Lin, Li-Hsieh
2007
8 1 artikel
74 AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions Chew, David SH
2007
8 1 artikel
75 A Three Stage Integrative Pathway Search (TIPS©) framework to identify toxicity relevant genes and pathways Li, Zheng
2007
8 1 artikel
76 A topological algorithm for identification of structural domains of proteins Emmert-Streib, Frank
2007
8 1 artikel
77 A transversal approach to predict gene product networks from ontology-based similarity Chabalier, Julie
2007
8 1 artikel
78 AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site Kochetov, Alex V
2007
8 1 artikel
79 A unified framework for finding differentially expressed genes from microarray experiments Shaik, Jahangheer S
2007
8 1 artikel
80 Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool Dalevi, Daniel
2007
8 1 artikel
81 Automated smoother for the numerical decoupling of dynamics models Vilela, Marco
2007
8 1 artikel
82 Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks Daraselia, Nikolai
2007
8 1 artikel
83 Automatic generation of 3D motifs for classification of protein binding sites Nebel, Jean-Christophe
2007
8 1 artikel
84 Automatic reconstruction of a bacterial regulatory network using Natural Language Processing Rodríguez-Penagos, Carlos
2007
8 1 artikel
85 Automating document classification for the Immune Epitope Database Wang, Peng
2007
8 1 artikel
86 A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat Alberts, Rudi
2007
8 1 artikel
87 AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa Stamatakis, Alexandros
2007
8 1 artikel
88 AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction Saito, Ayumu
2007
8 1 artikel
89 Background frequencies for residue variability estimates: BLOSUM revisited Mihalek, I
2007
8 1 artikel
90 Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data Liu, Xiangdong
2007
8 1 artikel
91 Bayesian meta-analysis models for microarray data: a comparative study Conlon, Erin M
2007
8 1 artikel
92 Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks Kim, Chang Sik
2007
8 1 artikel
93 Bayesian refinement of protein functional site matching Mardia, Kanti V
2007
8 1 artikel
94 Benchmarking consensus model quality assessment for protein fold recognition McGuffin, Liam J
2007
8 1 artikel
95 Benchmarking natural-language parsers for biological applications using dependency graphs Clegg, Andrew B
2007
8 1 artikel
96 BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips Turro, Ernest
2007
8 1 artikel
97 Bias in random forest variable importance measures: Illustrations, sources and a solution Strobl, Carolin
2007
8 1 artikel
98 Bioclipse: an open source workbench for chemo- and bioinformatics Spjuth, Ola
2007
8 1 artikel
99 BioInfer: a corpus for information extraction in the biomedical domain Pyysalo, Sampo
2007
8 1 artikel
100 Bioinformatic identification of novel putative photoreceptor specific cis-elements Danko, Charles G
2007
8 1 artikel
101 Bioinformatics analysis of the early inflammatory response in a rat thermal injury model Yang, Eric
2007
8 1 artikel
102 Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data Hladish, Thomas
2007
8 1 artikel
103 BioPP: a tool for web-publication of biological networks Viswanathan, Ganesh A
2007
8 1 artikel
104 BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features Tsai, Richard Tzong-Han
2007
8 1 artikel
105 BIRCH: A user-oriented, locally-customizable, bioinformatics system Fristensky, Brian
2007
8 1 artikel
106 Blast sampling for structural and functional analyses Friedrich, Anne
2007
8 1 artikel
107 BNDB – The Biochemical Network Database Küntzer, Jan
2007
8 1 artikel
108 Boolean networks using the chi-square test for inferring large-scale gene regulatory networks Kim, Haseong
2007
8 1 artikel
109 Bounds on the distribution of the number of gaps when circles and lines are covered by fragments: Theory and practical application to genomic and metagenomic projects Moriarty, John
2007
8 1 artikel
110 BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes Luo, Yingqin
2007
8 1 artikel
111 BranchClust: a phylogenetic algorithm for selecting gene families Poptsova, Maria S
2007
8 1 artikel
112 Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction? Bellamy-Royds, Amelia B
2007
8 1 artikel
113 CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes Sclep, Gert
2007
8 1 artikel
114 CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences Chen, Xianfeng
2007
8 1 artikel
115 Characterization and simulation of cDNA microarray spots using a novel mathematical model Kim, Hye Young
2007
8 1 artikel
116 Characterization of protein-interaction networks in tumors Platzer, Alexander
2007
8 1 artikel
117 Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms Sinha, Amit U
2007
8 1 artikel
118 Classification of heterogeneous microarray data by maximum entropy kernel Fujibuchi, Wataru
2007
8 1 artikel
119 Classification of microarray data using gene networks Rapaport, Franck
2007
8 1 artikel
120 CLUSS: Clustering of protein sequences based on a new similarity measure Kelil, Abdellali
2007
8 1 artikel
121 Colony size measurement of the yeast gene deletion strains for functional genomics Memarian, Negar
2007
8 1 artikel
122 Combination of scoring schemes for protein docking Heuser, Philipp
2007
8 1 artikel
123 Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements Lan, Hui
2007
8 1 artikel
124 Comparative evaluation of gene-set analysis methods Liu, Qi
2007
8 1 artikel
125 Comparing segmentations by applying randomization techniques Haiminen, Niina
2007
8 1 artikel
126 Comparing sequences without using alignments: application to HIV/SIV subtyping Didier, Gilles
2007
8 1 artikel
127 Comparison of protein structures by growing neighborhood alignments Bhattacharya, Sourangshu
2007
8 1 artikel
128 Composition Profiler: a tool for discovery and visualization of amino acid composition differences Vacic, Vladimir
2007
8 1 artikel
129 Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment Ferragina, Paolo
2007
8 1 artikel
130 Computational analysis of the relationship between allergenicity and digestibility of allergenic proteins in simulated gastric fluid Jiang, Bingjun
2007
8 1 artikel
131 Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype Martínez-Pérez, Israel M
2007
8 1 artikel
132 Computational RNA secondary structure design: empirical complexity and improved methods Aguirre-Hernández, Rosalía
2007
8 1 artikel
133 Computation of significance scores of unweighted Gene Set Enrichment Analyses Keller, Andreas
2007
8 1 artikel
134 Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants Price, Erin P
2007
8 1 artikel
135 Conceptual-level workflow modeling of scientific experiments using NMR as a case study Verdi, Kacy K
2007
8 1 artikel
136 Considerations in the identification of functional RNA structural elements in genomic alignments Babak, Tomas
2007
8 1 artikel
137 Constructing a meaningful evolutionary average at the phylogenetic center of mass Stone, Eric A
2007
8 1 artikel
138 Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory Luo, Feng
2007
8 1 artikel
139 Context based mixture model for cell phase identification in automated fluorescence microscopy Wang, Meng
2007
8 1 artikel
140 Convergent algorithms for protein structural alignment Martínez, Leandro
2007
8 1 artikel
141 Correction: Splice site identification using probabilistic parameters and SVM classification Baten, AKMA
2007
8 1 artikel
142 Correlation between structure and temperature in prokaryotic metabolic networks Takemoto, Kazuhiro
2007
8 1 artikel
143 Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue Strickert, Marc
2007
8 1 artikel
144 CoryneRegNet 4.0 – A reference database for corynebacterial gene regulatory networks Baumbach, Jan
2007
8 1 artikel
145 CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats Bland, Charles
2007
8 1 artikel
146 Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX' Gaunt, Tom R
2007
8 1 artikel
147 DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis Sherman, Brad T
2007
8 1 artikel
148 Dendroscope: An interactive viewer for large phylogenetic trees Huson, Daniel H
2007
8 1 artikel
149 Dependence of paracentric inversion rate on tract length York, Thomas L
2007
8 1 artikel
150 Design and implementation of a generalized laboratory data model Wendl, Michael C
2007
8 1 artikel
151 Detailed estimation of bioinformatics prediction reliability through the Fragmented Prediction Performance Plots Carugo, Oliviero
2007
8 1 artikel
152 Detecting differential expression in microarray data: comparison of optimal procedures Perelman, Elena
2007
8 1 artikel
153 Detecting microsatellites within genomes: significant variation among algorithms Leclercq, Sébastien
2007
8 1 artikel
154 Detecting multivariate differentially expressed genes Nilsson, Roland
2007
8 1 artikel
155 Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online) Hsu, Chun-Nan
2007
8 1 artikel
156 Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines Bui, Huynh-Hoa
2007
8 1 artikel
157 Difference-based clustering of short time-course microarray data with replicates Kim, Jihoon
2007
8 1 artikel
158 Differential analysis for high density tiling microarray data Ghosh, Srinka
2007
8 1 artikel
159 Direct maximum parsimony phylogeny reconstruction from genotype data Sridhar, Srinath
2007
8 1 artikel
160 Discarding duplicate ditags in LongSAGE analysis may introduce significant error Emmersen, Jeppe
2007
8 1 artikel
161 Discovering biomarkers from gene expression data for predicting cancer subgroups using neural networks and relational fuzzy clustering Pal, Nikhil R
2007
8 1 artikel
162 Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment Jothi, Raja
2007
8 1 artikel
163 Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites Dudev, Minko
2007
8 1 artikel
164 Discriminative motif discovery in DNA and protein sequences using the DEME algorithm Redhead, Emma
2007
8 1 artikel
165 DNA-based watermarks using the DNA-Crypt algorithm Heider, Dominik
2007
8 1 artikel
166 Domain motions of Argonaute, the catalytic engine of RNA interference Ming, Dengming
2007
8 1 artikel
167 Dynamic simulation of regulatory networks using SQUAD Di Cara, Alessandro
2007
8 1 artikel
168 EDISA: extracting biclusters from multiple time-series of gene expression profiles Supper, Jochen
2007
8 1 artikel
169 Effective selection of informative SNPs and classification on the HapMap genotype data Zhou, Nina
2007
8 1 artikel
170 Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions Levitsky, Victor G
2007
8 1 artikel
171 Efficacy of different protein descriptors in predicting protein functional families Ong, Serene AK
2007
8 1 artikel
172 Efficient classification of complete parameter regions based on semidefinite programming Kuepfer, Lars
2007
8 1 artikel
173 Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign Harmanci, Arif Ozgun
2007
8 1 artikel
174 eQTL Viewer: visualizing how sequence variation affects genome-wide transcription Zou, Wei
2007
8 1 artikel
175 Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips Harrison, Andrew P
2007
8 1 artikel
176 Estimating genealogies from linked marker data: a Bayesian approach Gasbarra, Dario
2007
8 1 artikel
177 Estimating the annotation error rate of curated GO database sequence annotations Jones, Craig E
2007
8 1 artikel
178 Estimation of the number of extreme pathways for metabolic networks Yeung, Matthew
2007
8 1 artikel
179 Evaluation of 3D-Jury on CASP7 models Kaján, László
2007
8 1 artikel
180 Evaluation of gene-expression clustering via mutual information distance measure Priness, Ido
2007
8 1 artikel
181 Evaluation of sample size effect on the identification of haplotype blocks Osabe, Dai
2007
8 1 artikel
182 Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins Dong, Qiwen
2007
8 1 artikel
183 Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach Andorf, Carson
2007
8 1 artikel
184 Extended analysis of benchmark datasets for Agilent two-color microarrays Kerr, Kathleen F
2007
8 1 artikel
185 Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes Chou, Jeff W
2007
8 1 artikel
186 Factor analysis for gene regulatory networks and transcription factor activity profiles Pournara, Iosifina
2007
8 1 artikel
187 False occurrences of functional motifs in protein sequences highlight evolutionary constraints Via, Allegra
2007
8 1 artikel
188 False positive reduction in protein-protein interaction predictions using gene ontology annotations Mahdavi, Mahmoud A
2007
8 1 artikel
189 Fast automated cell phenotype image classification Hamilton, Nicholas A
2007
8 1 artikel
190 Fast computation of distance estimators Elias, Isaac
2007
8 1 artikel
191 Features generated for computational splice-site prediction correspond to functional elements Dogan, Rezarta Islamaj
2007
8 1 artikel
192 FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data Fu, Limin
2007
8 1 artikel
193 Flexible mapping of homology onto structure with Homolmapper Rockwell, Nathan C
2007
8 1 artikel
194 FlexOracle: predicting flexible hinges by identification of stable domains Flores, Samuel C
2007
8 1 artikel
195 160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA) Li, Isaac TS
2007
8 1 artikel
196 fREDUCE: Detection of degenerate regulatory elements using correlation with expression Wu, Randy Z
2007
8 1 artikel
197 From genes to functional classes in the study of biological systems Al-Shahrour, Fátima
2007
8 1 artikel
198 FUNC: a package for detecting significant associations between gene sets and ontological annotations Prüfer, Kay
2007
8 1 artikel
199 GEDI: a user-friendly toolbox for analysis of large-scale gene expression data Fujita, André
2007
8 1 artikel
200 Gene analogue finder: a GRID solution for finding functionally analogous gene products Tulipano, Angelica
2007
8 1 artikel
201 GeneBins: a database for classifying gene expression data, with application to plant genome arrays Goffard, Nicolas
2007
8 1 artikel
202 Gene network interconnectedness and the generalized topological overlap measure Yip, Andy M
2007
8 1 artikel
203 Generating confidence intervals on biological networks Thorne, Thomas
2007
8 1 artikel
204 Gene selection for classification of microarray data based on the Bayes error Zhang, Ji-Gang
2007
8 1 artikel
205 Gene selection with multiple ordering criteria Chen, James J
2007
8 1 artikel
206 Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases Berger, Seth I
2007
8 1 artikel
207 GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest Diaz-Uriarte, Ramón
2007
8 1 artikel
208 GenMAPP 2: new features and resources for pathway analysis Salomonis, Nathan
2007
8 1 artikel
209 Genome bioinformatic analysis of nonsynonymous SNPs Burke, David F
2007
8 1 artikel
210 Genome Expression Pathway Analysis Tool – Analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context Weniger, Markus
2007
8 1 artikel
211 Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis Liu, Chun-Chi
2007
8 1 artikel
212 Genomorama: genome visualization and analysis Gans, Jason D
2007
8 1 artikel
213 GEVALT: An integrated software tool for genotype analysis Davidovich, Ofir
2007
8 1 artikel
214 Glycosylation site prediction using ensembles of Support Vector Machine classifiers Caragea, Cornelia
2007
8 1 artikel
215 GOSim – an R-package for computation of information theoretic GO similarities between terms and gene products Fröhlich, Holger
2007
8 1 artikel
216 GraphDNA: a Java program for graphical display of DNA composition analyses Thomas, Jamie M
2007
8 1 artikel
217 Growing functional modules from a seed protein via integration of protein interaction and gene expression data Maraziotis, Ioannis A
2007
8 1 artikel
218 Haplotype-based score test for linkage in nuclear families Nam, Chung Mo
2007
8 1 artikel
219 HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing Larsson, Erik
2007
8 1 artikel
220 Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data Wang, Zailong
2007
8 1 artikel
221 High-throughput identification of interacting protein-protein binding sites Chung, Jo-Lan
2007
8 1 artikel
222 High-throughput sequence alignment using Graphics Processing Units Schatz, Michael C
2007
8 1 artikel
223 Hinge Atlas: relating protein sequence to sites of structural flexibility Flores, Samuel C
2007
8 1 artikel
224 HMM-ModE – Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences Srivastava, Prashant K
2007
8 1 artikel
225 Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes Makita, Yuko
2007
8 1 artikel
226 HoughFeature, a novel method for assessing drug effects in three-color cDNA microarray experiments Zhao, Hongya
2007
8 1 artikel
227 How accurate and statistically robust are catalytic site predictions based on closeness centrality? Chea, Eric
2007
8 1 artikel
228 How accurately is ncRNA aligned within whole-genome multiple alignments? Wang, Adrienne X
2007
8 1 artikel
229 How to decide which are the most pertinent overly-represented features during gene set enrichment analysis Barriot, Roland
2007
8 1 artikel
230 HoxPred: automated classification of Hox proteins using combinations of generalised profiles Thomas-Chollier, Morgane
2007
8 1 artikel
231 h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data Pittelkow, Yvonne E
2007
8 1 artikel
232 Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control Teixeira, Ana P
2007
8 1 artikel
233 IDconverter and IDClight: Conversion and annotation of gene and protein IDs Alibés, Andreu
2007
8 1 artikel
234 Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions Corà, Davide
2007
8 1 artikel
235 Identification of discriminative characteristics for clusters from biologic data with InforBIO software Tanaka, Naoto
2007
8 1 artikel
236 Identification of DNA-binding proteins using support vector machines and evolutionary profiles Kumar, Manish
2007
8 1 artikel
237 Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties Boekhorst, Jos
2007
8 1 artikel
238 Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation Cvijović, Marija
2007
8 1 artikel
239 Identification of sequence motifs significantly associated with antisense activity McQuisten, Kyle A
2007
8 1 artikel
240 Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors Yu, Xueping
2007
8 1 artikel
241 Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila Gu, Jin
2007
8 1 artikel
242 Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Kinase 2 Gu, Jenny
2007
8 1 artikel
243 Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network Irons, David J
2007
8 1 artikel
244 Identifying protein complexes directly from high-throughput TAP data with Markov random fields Rungsarityotin, Wasinee
2007
8 1 artikel
245 Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data Wu, Wei-Sheng
2007
8 1 artikel
246 Impact of image segmentation on high-content screening data quality for SK-BR-3 cells Hill, Andrew A
2007
8 1 artikel
247 Importance of data structure in comparing two dimension reduction methods for classification of microarray gene expression data Truntzer, Caroline
2007
8 1 artikel
248 Improved benchmarks for computational motif discovery Sandve, Geir Kjetil
2007
8 1 artikel
249 Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation Parsons, Helen M
2007
8 1 artikel
250 Improved human disease candidate gene prioritization using mouse phenotype Chen, Jing
2007
8 1 artikel
251 Improved precision and accuracy for microarrays using updated probe set definitions Sandberg, Rickard
2007
8 1 artikel
252 Improved residue contact prediction using support vector machines and a large feature set Cheng, Jianlin
2007
8 1 artikel
253 Improving gene set analysis of microarray data by SAM-GS Dinu, Irina
2007
8 1 artikel
254 Improving model construction of profile HMMs for remote homology detection through structural alignment Bernardes, Juliana S
2007
8 1 artikel
255 Improving model predictions for RNA interference activities that use support vector machine regression by combining and filtering features Peek, Andrew S
2007
8 1 artikel
256 Including probe-level uncertainty in model-based gene expression clustering Liu, Xuejun
2007
8 1 artikel
257 Incremental and unifying modelling formalism for biological interaction networks Yartseva, Anastasia
2007
8 1 artikel
258 Inference of miRNA targets using evolutionary conservation and pathway analysis Gaidatzis, Dimos
2007
8 1 artikel
259 Inference of miRNA targets using evolutionary conservation and pathway analysis Gaidatzis, Dimos
2007
8 1 artikel
260 Inferring activity changes of transcription factors by binding association with sorted expression profiles Cheng, Chao
2007
8 1 artikel
261 Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis Kim, Tae-Min
2007
8 1 artikel
262 Influence of degree correlations on network structure and stability in protein-protein interaction networks Friedel, Caroline C
2007
8 1 artikel
263 InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes Sun, Jingchun
2007
8 1 artikel
264 Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions Jiang, Haiyan
2007
8 1 artikel
265 In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells Naamane, Najib
2007
8 1 artikel
266 In silico panning for a non-competitive peptide inhibitor Yagi, Yukiko
2007
8 1 artikel
267 In silico segmentations of lentivirus envelope sequences Boissin-Quillon, Aurélia
2007
8 1 artikel
268 In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation Casneuf, Tineke
2007
8 1 artikel
269 Integrated network reconstruction, visualization and analysis using YANAsquare Schwarz, Roland
2007
8 1 artikel
270 Integrated olfactory receptor and microarray gene expression databases Liu, Nian
2007
8 1 artikel
271 Integrating sequence and structural biology with DAS Prlić, Andreas
2007
8 1 artikel
272 Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips Stalteri, Maria A
2007
8 1 artikel
273 Investigations into the relationship between feedback loops and functional importance of a signal transduction network based on Boolean network modeling Kwon, Yung-Keun
2007
8 1 artikel
274 ISHAPE: new rapid and accurate software for haplotyping Delaneau, Olivier
2007
8 1 artikel
275 Joint mapping of genes and conditions via multidimensional unfolding analysis Van Deun, Katrijn
2007
8 1 artikel
276 Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data Zhao, Xin
2007
8 1 artikel
277 Large-scale clustering of CAGE tag expression data Shimokawa, Kazuro
2007
8 1 artikel
278 Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing Wittkop, Tobias
2007
8 1 artikel
279 Large-scale integration of cancer microarray data identifies a robust common cancer signature Xu, Lei
2007
8 1 artikel
280 Large scale statistical inference of signaling pathways from RNAi and microarray data Froehlich, Holger
2007
8 1 artikel
281 Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction Larsen, Mette V
2007
8 1 artikel
282 Least-squares methods for identifying biochemical regulatory networks from noisy measurements Kim, Jongrae
2007
8 1 artikel
283 Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context Faith, Jeremiah J
2007
8 1 artikel
284 LIMPIC: a computational method for the separation of protein MALDI-TOF-MS signals from noise Mantini, Dante
2007
8 1 artikel
285 Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases Avila, César L
2007
8 1 artikel
286 Linking microarray reporters with protein functions Gaj, Stan
2007
8 1 artikel
287 Local Renyi entropic profiles of DNA sequences Vinga, Susana
2007
8 1 artikel
288 Locational distribution of gene functional classes in Arabidopsis thaliana Riley, Michael C
2007
8 1 artikel
289 Lower bounds on multiple sequence alignment using exact 3-way alignment Colbourn, Charles J
2007
8 1 artikel
290 MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data Hartler, Jürgen
2007
8 1 artikel
291 MATLIGN: a motif clustering, comparison and matching tool Kankainen, Matti
2007
8 1 artikel
292 MaxAlign: maximizing usable data in an alignment Gouveia-Oliveira, Rodrigo
2007
8 1 artikel
293 Measuring similarities between gene expression profiles through new data transformations Kim, Kyungpil
2007
8 1 artikel
294 MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes Zhu, Huaiqiu
2007
8 1 artikel
295 Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers Yang, Xinan
2007
8 1 artikel
296 MetaLook: a 3D visualisation software for marine ecological genomics Lombardot, Thierry
2007
8 1 artikel
297 MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments Veyrieras, Jean-Baptiste
2007
8 1 artikel
298 MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data Moore, Eider B
2007
8 1 artikel
299 Minimus: a fast, lightweight genome assembler Sommer, Daniel D
2007
8 1 artikel
300 Mining and state-space modeling and verification of sub-networks from large-scale biomolecular networks Hu, Xiaohua
2007
8 1 artikel
301 Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach Fujita, Masashi
2007
8 1 artikel
302 miRAS: a data processing system for miRNA expression profiling study Tian, Feng
2007
8 1 artikel
303 Missing channels in two-colour microarray experiments: Combining single-channel and two-channel data Lynch, Andy G
2007
8 1 artikel
304 Model based analysis of real-time PCR data from DNA binding dye protocols Alvarez, Mariano J
2007
8 1 artikel
305 Modeling biochemical transformation processes and information processing with Narrator Mandel, Johannes J
2007
8 1 artikel
306 Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms Chiang, Jung-Hsien
2007
8 1 artikel
307 Modeling SAGE tag formation and its effects on data interpretation within a Bayesian framework Gilchrist, Michael A
2007
8 1 artikel
308 Modular co-evolution of metabolic networks Zhao, Jing
2007
8 1 artikel
309 MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs Kato, Mamoru
2007
8 1 artikel
310 Motif kernel generated by genetic programming improves remote homology and fold detection Håndstad, Tony
2007
8 1 artikel
311 MPHASYS: a mouse phenotype analysis system Calder, R Brent
2007
8 1 artikel
312 msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation Hickerson, Michael J
2007
8 1 artikel
313 msmsEval: tandem mass spectral quality assignment for high-throughput proteomics Wong, Jason WH
2007
8 1 artikel
314 Multiple non-collinear TF-map alignments of promoter regions Blanco, Enrique
2007
8 1 artikel
315 Multivariate Analysis and Visualization of Splicing Correlations in Single-Gene Transcriptomes Emerick, Mark C
2007
8 1 artikel
316 Nearest Neighbor Networks: clustering expression data based on gene neighborhoods Huttenhower, Curtis
2007
8 1 artikel
317 NeuroTerrain – a client-server system for browsing 3D biomedical image data sets Gustafson, Carl
2007
8 1 artikel
318 Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements Doh, Sung Tae
2007
8 1 artikel
319 Normalization and experimental design for ChIP-chip data Peng, Shouyong
2007
8 1 artikel
320 Normalization method for metabolomics data using optimal selection of multiple internal standards Sysi-Aho, Marko
2007
8 1 artikel
321 Novel and simple transformation algorithm for combining microarray data sets Kim, Ki-Yeol
2007
8 1 artikel
322 Novel definition files for human GeneChips based on GeneAnnot Ferrari, Francesco
2007
8 1 artikel
323 On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve Ye, Jingjing
2007
8 1 artikel
324 On the detection of functionally coherent groups of protein domains with an extension to protein annotation McLaughlin, William A
2007
8 1 artikel
325 OntologyWidget – a reusable, embeddable widget for easily locating ontology terms Beauheim, Catherine C
2007
8 1 artikel
326 Optimization based automated curation of metabolic reconstructions Satish Kumar, Vinay
2007
8 1 artikel
327 Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics Jiang, Xinning
2007
8 1 artikel
328 OReFiL: an online resource finder for life sciences Yamamoto, Yasunori
2007
8 1 artikel
329 Orthogonal projections to latent structures as a strategy for microarray data normalization Bylesjö, Max
2007
8 1 artikel
330 Orthology prediction at scalable resolution by phylogenetic tree analysis van der Heijden, René TJM
2007
8 1 artikel
331 PADB : Published Association Database Rhee, Hwanseok
2007
8 1 artikel
332 PARE: A tool for comparing protein abundance and mRNA expression data Yu, Eric Z
2007
8 1 artikel
333 PARPs database: A LIMS systems for protein-protein interaction data mining or laboratory information management system Droit, Arnaud
2007
8 1 artikel
334 PASSIM – an open source software system for managing information in biomedical studies Viksna, Juris
2007
8 1 artikel
335 PathFinder: mining signal transduction pathway segments from protein-protein interaction networks Bebek, Gurkan
2007
8 1 artikel
336 PedGenie: meta genetic association testing in mixed family and case-control designs Curtin, Karen
2007
8 1 artikel
337 Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries Dahinden, Corinne
2007
8 1 artikel
338 PepBank - a database of peptides based on sequence text mining and public peptide data sources Shtatland, Timur
2007
8 1 artikel
339 Peptide ligand screening of α-synuclein aggregation modulators by in silico panning Abe, Koichi
2007
8 1 artikel
340 Permutation test for periodicity in short time series data Ptitsyn, Andrey A
2007
8 1 artikel
341 PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments Caffrey, Daniel R
2007
8 1 artikel
342 Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices Craig, Roger A
2007
8 1 artikel
343 Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences Shih, Arthur Chun-Chieh
2007
8 1 artikel
344 PILER-CR: Fast and accurate identification of CRISPR repeats Edgar, Robert C
2007
8 1 artikel
345 PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results He, Ji
2007
8 1 artikel
346 PlnTFDB: an integrative plant transcription factor database Riaño-Pachón, Diego Mauricio
2007
8 1 artikel
347 Portraits of breast cancer progression Dalgin, Gul S
2007
8 1 artikel
348 Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data Hulshizer, Randall
2007
8 1 artikel
349 Precise protein quantification based on peptide quantification using iTRAQ™ Boehm, Andreas M
2007
8 1 artikel
350 Predicting active site residue annotations in the Pfam database Mistry, Jaina
2007
8 1 artikel
351 Predicting and improving the protein sequence alignment quality by support vector regression Lee, Minho
2007
8 1 artikel
352 Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining Morgan, Xochitl C
2007
8 1 artikel
353 Predicting gene ontology functions from protein's regional surface structures Liu, Zhi-Ping
2007
8 1 artikel
354 Predicting mostly disordered proteins by using structure-unknown protein data Shimizu, Kana
2007
8 1 artikel
355 Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms Rajapakse, Menaka
2007
8 1 artikel
356 Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences Engelen, Stéfan
2007
8 1 artikel
357 Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model Morioka, Ryoko
2007
8 1 artikel
358 Predicting the phenotypic effects of non-synonymous single nucleotide polymorphisms based on support vector machines Tian, Jian
2007
8 1 artikel
359 Predicting zinc binding at the proteome level Passerini, Andrea
2007
8 1 artikel
360 Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method Nielsen, Morten
2007
8 1 artikel
361 Prediction of potential drug targets based on simple sequence properties Li, Qingliang
2007
8 1 artikel
362 Prediction of the burial status of transmembrane residues of helical membrane proteins Park, Yungki
2007
8 1 artikel
363 Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets Gormley, Michael
2007
8 1 artikel
364 Predictive modeling of plant messenger RNA polyadenylation sites Ji, Guoli
2007
8 1 artikel
365 Pre-processing Agilent microarray data Zahurak, Marianna
2007
8 1 artikel
366 primetv: a viewer for reconciled trees Sennblad, Bengt
2007
8 1 artikel
367 Primique: automatic design of specific PCR primers for each sequence in a family Fredslund, Jakob
2007
8 1 artikel
368 Probabilistic prediction and ranking of human protein-protein interactions Scott, Michelle S
2007
8 1 artikel
369 ProbCD: enrichment analysis accounting for categorization uncertainty Vêncio, Ricardo ZN
2007
8 1 artikel
370 ProCKSI: a decision support system for Protein (Structure) Comparison, Knowledge, Similarity and Information Barthel, Daniel
2007
8 1 artikel
371 Progressive multiple sequence alignments from triplets Kruspe, Matthias
2007
8 1 artikel
372 ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites Hummel, Jan
2007
8 1 artikel
373 Protein structural similarity search by Ramachandran codes Lo, Wei-Cheng
2007
8 1 artikel
374 Protein subcellular localization prediction based on compartment-specific features and structure conservation Su, Emily Chia-Yu
2007
8 1 artikel
375 Publishing perishing? Towards tomorrow's information architecture Seringhaus, Michael R
2007
8 1 artikel
376 PubMed related articles: a probabilistic topic-based model for content similarity Lin, Jimmy
2007
8 1 artikel
377 qPIPSA: Relating enzymatic kinetic parameters and interaction fields Gabdoulline, Razif R
2007
8 1 artikel
378 Quantitative sequence-function relationships in proteins based on gene ontology Sangar, Vineet
2007
8 1 artikel
379 Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement Pinto, Francisco R
2007
8 1 artikel
380 Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography Arenas, Miguel
2007
8 1 artikel
381 Recognition of interferon-inducible sites, promoters, and enhancers Ananko, Elena A
2007
8 1 artikel
382 Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets Launay, Guillaume
2007
8 1 artikel
383 Reconstruction of cell population dynamics using CFSE Yates, Andrew
2007
8 1 artikel
384 Reconstruction of human protein interolog network using evolutionary conserved network Huang, Tao-Wei
2007
8 1 artikel
385 RECOVIR: An application package to automatically identify some single stranded RNA viruses using capsid protein residues that uniquely distinguish among these viruses Zhu, Dianhui
2007
8 1 artikel
386 Recruitment of rare 3-grams at functional sites: Is this a mechanism for increasing enzyme specificity? Tobi, Dror
2007
8 1 artikel
387 Recursive Cluster Elimination (RCE) for classification and feature selection from gene expression data Yousef, Malik
2007
8 1 artikel
388 Reduced modeling of signal transduction – a modular approach Koschorreck, Markus
2007
8 1 artikel
389 Regulation of metabolic networks by small molecule metabolites Gutteridge, Alex
2007
8 1 artikel
390 Relating destabilizing regions to known functional sites in proteins Dessailly, Benoît H
2007
8 1 artikel
391 Relationship between insertion/deletion (indel) frequency of proteins and essentiality Chan, Simon K
2007
8 1 artikel
392 Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies Hoehndorf, Robert
2007
8 1 artikel
393 Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data Chen, James J
2007
8 1 artikel
394 RepSeq – A database of amino acid repeats present in lower eukaryotic pathogens Depledge, Daniel P
2007
8 1 artikel
395 Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base Skrabanek, Lucy
2007
8 1 artikel
396 Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures Lu, Xin
2007
8 1 artikel
397 Reuse of structural domain–domain interactions in protein networks Schuster-Böckler, Benjamin
2007
8 1 artikel
398 Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts Toedling, Joern
2007
8 1 artikel
399 Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts Toedling, Joern
2007
8 1 artikel
400 rMotifGen: random motif generator for DNA and protein sequences Rouchka, Eric C
2007
8 1 artikel
401 RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules Horesh, Yair
2007
8 1 artikel
402 Robust detection and verification of linear relationships to generate metabolic networks using estimates of technical errors Kose, Frank
2007
8 1 artikel
403 Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data Ahdesmäki, Miika
2007
8 1 artikel
404 SABERTOOTH: protein structural alignment based on a vectorial structure representation Teichert, Florian
2007
8 1 artikel
405 SAMPI: Protein Identification with Mass Spectra Alignments Kaltenbach, Hans-Michael
2007
8 1 artikel
406 SAT, a flexible and optimized Web application for SSR marker development Dereeper, Alexis
2007
8 1 artikel
407 SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML) Rodriguez, Nicolas
2007
8 1 artikel
408 Scoring functions and enrichment: a case study on Hsp90 Konstantinou-Kirtay, Chrysi
2007
8 1 artikel
409 Seahawk: moving beyond HTML in Web-based bioinformatics analysis Gordon, Paul MK
2007
8 1 artikel
410 SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA sequences Elloumi, Fathi
2007
8 1 artikel
411 Selecting dissimilar genes for multi-class classification, an application in cancer subtyping Cai, Zhipeng
2007
8 1 artikel
412 Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy Hu, Guangan
2007
8 1 artikel
413 Selective prediction of interaction sites in protein structures with THEMATICS Wei, Ying
2007
8 1 artikel
414 Semantic integration to identify overlapping functional modules in protein interaction networks Cho, Young-Rae
2007
8 1 artikel
415 Sequence similarity is more relevant than species specificity in probabilistic backtranslation Ferro, Alfredo
2007
8 1 artikel
416 Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms Diago, Luis A
2007
8 1 artikel
417 Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry Kind, Tobias
2007
8 1 artikel
418 Simcluster: clustering enumeration gene expression data on the simplex space Vêncio, Ricardo ZN
2007
8 1 artikel
419 Single TNFα trimers mediating NF-κB activation: stochastic robustness of NF-κB signaling Lipniacki, Tomasz
2007
8 1 artikel
420 sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database Shah, Jyoti K
2007
8 1 artikel
421 Spatial location and its relevance for terminological inferences in bio-ontologies Schulz, Stefan
2007
8 1 artikel
422 SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis Kahn, Ari B
2007
8 1 artikel
423 Statistical analysis and significance testing of serial analysis of gene expression data using a Poisson mixture model Zuyderduyn, Scott D
2007
8 1 artikel
424 Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics Pfeifer, Nico
2007
8 1 artikel
425 Statistical power of phylo-HMM for evolutionarily conserved element detection Fan, Xiaodan
2007
8 1 artikel
426 Statistical significance of cis-regulatory modules Schones, Dustin E
2007
8 1 artikel
427 Statistical significance of quantitative PCR Karlen, Yann
2007
8 1 artikel
428 Statistical tests to compare motif count exceptionalities Robin, Stéphane
2007
8 1 artikel
429 Statistical validation of megavariate effects in ASCA Vis, Daniel J
2007
8 1 artikel
430 Strainer: software for analysis of population variation in community genomic datasets Eppley, John M
2007
8 1 artikel
431 Stratification bias in low signal microarray studies Parker, Brian J
2007
8 1 artikel
432 Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases Tkaczuk, Karolina L
2007
8 1 artikel
433 Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition Tamura, Takeyuki
2007
8 1 artikel
434 Supervised group Lasso with applications to microarray data analysis Ma, Shuangge
2007
8 1 artikel
435 Supervised multivariate analysis of sequence groups to identify specificity determining residues Wallace, Iain M
2007
8 1 artikel
436 Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs Rashid, Mamoon
2007
8 1 artikel
437 TABASCO: A single molecule, base-pair resolved gene expression simulator Kosuri, Sriram
2007
8 1 artikel
438 TagSmart: analysis and visualization for yeast mutant fitness data measured by tag microarrays Kim, Chulyun
2007
8 1 artikel
439 TAMEE: data management and analysis for tissue microarrays Thallinger, Gerhard G
2007
8 1 artikel
440 Tandem mass spectrometry data quality assessment by self-convolution Choo, Keng Wah
2007
8 1 artikel
441 TAP score: torsion angle propensity normalization applied to local protein structure evaluation Tosatto, Silvio CE
2007
8 1 artikel
442 TBMap: a taxonomic perspective on the phylogenetic database TreeBASE Page, Roderic DM
2007
8 1 artikel
443 Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation Jelier, Rob
2007
8 1 artikel
444 The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats Grissa, Ibtissem
2007
8 1 artikel
445 The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data Pascal, BD
2007
8 1 artikel
446 The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments Cannataro, Mario
2007
8 1 artikel
447 The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications Bare, J Christopher
2007
8 1 artikel
448 The Personal Sequence Database: a suite of tools to create and maintain web-accessible sequence databases Givan, Scott A
2007
8 1 artikel
449 The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases Côté, Richard G
2007
8 1 artikel
450 The reactive metabolite target protein database (TPDB) – a web-accessible resource Hanzlik, Robert P
2007
8 1 artikel
451 The topology of metabolic isotope labeling networks Weitzel, Michael
2007
8 1 artikel
452 The utility of MAS5 expression summary and detection call algorithms Pepper, Stuart D
2007
8 1 artikel
453 Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization Kim, Namshin
2007
8 1 artikel
454 TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets Vicentini, Renato
2007
8 1 artikel
455 TMM@: a web application for the analysis of transmembrane helix mobility Skjaerven, Lars
2007
8 1 artikel
456 TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy MessaoudiI, Cédric
2007
8 1 artikel
457 Topology independent protein structural alignment Dundas, Joe
2007
8 1 artikel
458 Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint Marsden, Russell L
2007
8 1 artikel
459 Toward the automated generation of genome-scale metabolic networks in the SEED DeJongh, Matthew
2007
8 1 artikel
460 Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated Salmonella Ward, William O
2007
8 1 artikel
461 TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences Karpenahalli, Manjunatha R
2007
8 1 artikel
462 Tracembler – software for in-silico chromosome walking in unassembled genomes Dong, Qunfeng
2007
8 1 artikel
463 Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays Lu, Jun
2007
8 1 artikel
464 Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory Sayyed-Ahmad, Abdallah
2007
8 1 artikel
465 Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana Redestig, Henning
2007
8 1 artikel
466 Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data Yu, Hui
2007
8 1 artikel
467 UbiProt: a database of ubiquitylated proteins Chernorudskiy, Alexander L
2007
8 1 artikel
468 Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL Aranguren, Mikel Egaña
2007
8 1 artikel
469 Unexpected observations after mapping LongSAGE tags to the human genome Keime, Céline
2007
8 1 artikel
470 'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools Shen, Yao Qing
2007
8 1 artikel
471 Use of DNA melting simulation software for in silico diagnostic assay design: targeting regions with complex melting curves and confirmation by real-time PCR using intercalating dyes Rasmussen, John P
2007
8 1 artikel
472 Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA – a Bayesian approach Pin, Carmen
2007
8 1 artikel
473 Userscripts for the Life Sciences Willighagen, Egon L
2007
8 1 artikel
474 Using contextual and lexical features to restructure and validate the classification of biomedical concepts Fan, Jung-Wei
2007
8 1 artikel
475 Using expression arrays for copy number detection: an example from E. coli Skvortsov, Dmitriy
2007
8 1 artikel
476 Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli Schramm, Gunnar
2007
8 1 artikel
477 3'-UTR SIRF: A database for identifying clusters of whort interspersed repeats in 3' untranslated regions Andken, Benjamin B
2007
8 1 artikel
478 VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines Doytchinova, Irini A
2007
8 1 artikel
479 Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D Porollo, Aleksey
2007
8 1 artikel
480 Visualization of three-way comparisons of omics data Baran, Richard
2007
8 1 artikel
481 VSGdb: a database for trypanosome variant surface glycoproteins, a large and diverse family of coiled coil proteins Marcello, Lucio
2007
8 1 artikel
482 WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences Pavesi, Giulio
2007
8 1 artikel
483 Weighted analysis of general microarray experiments Sjögren, Anders
2007
8 1 artikel
484 XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences Newman, Aaron M
2007
8 1 artikel
485 ZPS: visualization of recent adaptive evolution of proteins Chattopadhyay, Sujay
2007
8 1 artikel
                             485 gevonden resultaten
 
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