Digitale Bibliotheek
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                             310 gevonden resultaten
nr titel auteur tijdschrift jaar jaarg. afl. pagina('s) type
1 Ab initio identification of putative human transcription factor binding sites by comparative genomics Corà, D
2005
6 1 artikel
2 Accelerated probabilistic inference of RNA structure evolution Holmes, Ian
2005
6 1 artikel
3 A comparative review of estimates of the proportion unchanged genes and the false discovery rate Broberg, Per
2005
6 1 artikel
4 A comparative study of discriminating human heart failure etiology using gene expression profiles Huang, Xiaohong
2005
6 1 artikel
5 A comparison of RNA folding measures Freyhult, Eva
2005
6 1 artikel
6 A computational approach for identifying pathogenicity islands in prokaryotic genomes Yoon, Sung Ho
2005
6 1 artikel
7 A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities Bastien, Olivier
2005
6 1 artikel
8 A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators Fogolari, Federico
2005
6 1 artikel
9 A linear memory algorithm for Baum-Welch training Miklós, István
2005
6 1 artikel
10 Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system Diener, Stephen E
2005
6 1 artikel
11 Alternative splicing and protein function Neverov, AD
2005
6 1 artikel
12 A method for aligning RNA secondary structures and its application to RNA motif detection Liu, Jianghui
2005
6 1 artikel
13 A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage Wang, Jianmin
2005
6 1 artikel
14 A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models Sgourakis, Nikolaos G
2005
6 1 artikel
15 A method of precise mRNA/DNA homology-based gene structure prediction Churbanov, Alexander
2005
6 1 artikel
16 A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks Yugi, Katsuyuki
2005
6 1 artikel
17 A multistep bioinformatic approach detects putative regulatory elements in gene promoters Bortoluzzi, Stefania
2005
6 1 artikel
18 An adaptive method for cDNA microarray normalization Zhao, Yingdong
2005
6 1 artikel
19 An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments Novikov, Eugene
2005
6 1 artikel
20 An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reactions Pozhitkov, Alexander
2005
6 1 artikel
21 Analysis of concordance of different haplotype block partitioning algorithms Indap, Amit R
2005
6 1 artikel
22 An analysis of extensible modelling for functional genomics data Jones, Andrew R
2005
6 1 artikel
23 An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem Shmygelska, Alena
2005
6 1 artikel
24 Ancestral sequence alignment under optimal conditions Hudek, Alexander K
2005
6 1 artikel
25 An edit script for taxonomic classifications Page, Roderic DM
2005
6 1 artikel
26 An empirical analysis of training protocols for probabilistic gene finders Majoros, William H
2005
6 1 artikel
27 An Entropy-based gene selection method for cancer classification using microarray data Liu, Xiaoxing
2005
6 1 artikel
28 A new dynamical layout algorithm for complex biochemical reaction networks Wegner, Katja
2005
6 1 artikel
29 A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: Toward the strict alignment of valid fragments across electrophoretic patterns Kadota, Koji
2005
6 1 artikel
30 A note on generalized Genome Scan Meta-Analysis statistics Koziol, James A
2005
6 1 artikel
31 AnovArray: a set of SAS macros for the analysis of variance of gene expression data Hennequet-Antier, Christelle
2005
6 1 artikel
32 A novel method for prokaryotic promoter prediction based on DNA stability Kanhere, Aditi
2005
6 1 artikel
33 An SVM-based system for predicting protein subnuclear localizations Lei, Zhengdeng
2005
6 1 artikel
34 Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal fungi Nilsson, R Henrik
2005
6 1 artikel
35 A protein domain interaction interface database: InterPare Gong, Sungsam
2005
6 1 artikel
36 Are scale-free networks robust to measurement errors? Lin, Nan
2005
6 1 artikel
37 A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles Möglich, Andreas
2005
6 1 artikel
38 A robust two-way semi-linear model for normalization of cDNA microarray data Wang, Deli
2005
6 1 artikel
39 arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays Menten, Björn
2005
6 1 artikel
40 ArrayQuest: a web resource for the analysis of DNA microarray data Argraves, Gary L
2005
6 1 artikel
41 ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences Bonizzoni, Paola
2005
6 1 artikel
42 Assessing local structural perturbations in proteins Lema, Martin A
2005
6 1 artikel
43 A standard curve based method for relative real time PCR data processing Larionov, Alexey
2005
6 1 artikel
44 A statistical approach for array CGH data analysis Picard, Franck
2005
6 1 artikel
45 A stepwise framework for the normalization of array CGH data Khojasteh, Mehrnoush
2005
6 1 artikel
46 A Taxonomic Search Engine: Federating taxonomic databases using web services Page, Roderic DM
2005
6 1 artikel
47 Atlas – a data warehouse for integrative bioinformatics Shah, Sohrab P
2005
6 1 artikel
48 AutoFACT: An Automatic Functional Annotation and Classification Tool Koski, Liisa B
2005
6 1 artikel
49 Automated generation of heuristics for biological sequence comparison Slater, Guy St C
2005
6 1 artikel
50 Automated methods of predicting the function of biological sequences using GO and BLAST Jones, Craig E
2005
6 1 artikel
51 Automatic detection of false annotations via binary property clustering Kaplan, Noam
2005
6 1 artikel
52 Automation of gene assignments to metabolic pathways using high-throughput expression data Popescu, Liviu
2005
6 1 artikel
53 AVID: An integrative framework for discovering functional relationships among proteins Jiang, Taijiao
2005
6 1 artikel
54 Avoiding inconsistencies over time and tracking difficulties in Applied Biosystems AB1700™/Panther™ probe-to-gene annotations Noth, Sebastian
2005
6 1 artikel
55 Bayesian coestimation of phylogeny and sequence alignment Lunter, Gerton
2005
6 1 artikel
56 Better prediction of protein contact number using a support vector regression analysis of amino acid sequence Yuan, Zheng
2005
6 1 artikel
57 BMC Bioinformatics comes of age Cockerill, Matthew J
2005
6 1 artikel
58 Building a protein name dictionary from full text: a machine learning term extraction approach Shi, Lei
2005
6 1 artikel
59 CAGER: classification analysis of gene expression regulation using multiple information sources Ruan, Jianhua
2005
6 1 artikel
60 Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants Wolski, Witold E
2005
6 1 artikel
61 Can Zipf's law be adapted to normalize microarrays? Lu, Tim
2005
6 1 artikel
62 CGHPRO – A comprehensive data analysis tool for array CGH Chen, Wei
2005
6 1 artikel
63 CGH-Profiler: Data mining based on genomic aberration profiles Schubert, Falk
2005
6 1 artikel
64 CGMIM: Automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes Bajdik, Chris D
2005
6 1 artikel
65 Chemistry in Bioinformatics Murray-Rust, Peter
2005
6 1 artikel
66 Chromosomal clustering of a human transcriptome reveals regulatory background Vogel, Jan H
2005
6 1 artikel
67 Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine Xue, Chenghai
2005
6 1 artikel
68 Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural networks Ma, Qicheng
2005
6 1 artikel
69 Clustering the annotation space of proteins Kunin, Victor
2005
6 1 artikel
70 CoaSim: A flexible environment for simulating genetic data under coalescent models Mailund, Thomas
2005
6 1 artikel
71 Columba: an integrated database of proteins, structures, and annotations Trißl, Silke
2005
6 1 artikel
72 Combining Affymetrix microarray results Stevens, John R
2005
6 1 artikel
73 Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast Ye, Ping
2005
6 1 artikel
74 Communication and re-use of chemical information in bioscience Murray-Rust, Peter
2005
6 1 artikel
75 Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes Ganapathi, Mythily
2005
6 1 artikel
76 Comparative mapping of sequence-based and structure-based protein domains Zhang, Ya
2005
6 1 artikel
77 Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity Supek, Fran
2005
6 1 artikel
78 Comparison of normalization methods for CodeLink Bioarray data Wu, Wei
2005
6 1 artikel
79 Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data Shedden, Kerby
2005
6 1 artikel
80 Computational identification of strain-, species- and genus-specific proteins Mazumder, Raja
2005
6 1 artikel
81 Computational verification of protein-protein interactions by orthologous co-expression Tirosh, Itay
2005
6 1 artikel
82 Computing expectation values for RNA motifs using discrete convolutions Lambert, André
2005
6 1 artikel
83 Confirmation of human protein interaction data by human expression data Hahn, Andreas
2005
6 1 artikel
84 Considerations when using the significance analysis of microarrays (SAM) algorithm Larsson, Ola
2005
6 1 artikel
85 Construction and validation of the APOCHIP, a spotted oligo-microarray for the study of beta-cell apoptosis Magnusson, Nils E
2005
6 1 artikel
86 Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation Pahikkala, Tapio
2005
6 1 artikel
87 COPASAAR – A database for proteomic analysis of single amino acid repeats Depledge, Daniel P
2005
6 1 artikel
88 CoPub Mapper: mining MEDLINE based on search term co-publication Alako, Blaise TF
2005
6 1 artikel
89 Correction: Determination of the differentially expressed genes in microarray experiments using local FDR Aubert, J
2005
6 1 artikel
90 Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein Raghava, Gajendra PS
2005
6 1 artikel
91 Correlation test to assess low-level processing of high-density oligonucleotide microarray data Ploner, Alexander
2005
6 1 artikel
92 Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases Srdanovic, Marko
2005
6 1 artikel
93 Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes Warnat, Patrick
2005
6 1 artikel
94 Cyclic nucleotide binding proteins in the Arabidopsis thaliana and Oryza sativa genomes Bridges, Dave
2005
6 1 artikel
95 DCD – a novel plant specific domain in proteins involved in development and programmed cell death Tenhaken, Raimund
2005
6 1 artikel
96 Detailed protein sequence alignment based on Spectral Similarity Score (SSS) Gupta, Kshitiz
2005
6 1 artikel
97 Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking Hamahashi, Shugo
2005
6 1 artikel
98 DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment Subramanian, Amarendran R
2005
6 1 artikel
99 Differences in codon bias cannot explain differences in translational power among microbes Dethlefsen, Les
2005
6 1 artikel
100 Differentiation of regions with atypical oligonucleotide composition in bacterial genomes Reva, Oleg N
2005
6 1 artikel
101 Discover protein sequence signatures from protein-protein interaction data Fang, Jianwen
2005
6 1 artikel
102 Discovery of protein-protein interactions using a combination of linguistic, statistical and graphical information Cooper, James W
2005
6 1 artikel
103 Dissecting systems-wide data using mixture models: application to identify affected cellular processes Svensson, J Peter
2005
6 1 artikel
104 DSD – An integrated, web-accessible database of Dehydrogenase Enzyme Stereospecificities Toseland, Christopher P
2005
6 1 artikel
105 Dynamic covariation between gene expression and proteome characteristics Sharabiani, Mansour Taghavi Azar
2005
6 1 artikel
106 Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification Lin, Li-Hsieh
2005
6 1 artikel
107 DynGO: a tool for visualizing and mining of Gene Ontology and its associations Liu, Hongfang
2005
6 1 artikel
108 Effective ambiguity checking in biosequence analysis Reeder, Janina
2005
6 1 artikel
109 Efficient analysis and extraction of MS/MS result data from Mascot™ result files Grosse-Coosmann, Florian
2005
6 1 artikel
110 Efficient decoding algorithms for generalized hidden Markov model gene finders Majoros, William H
2005
6 1 artikel
111 Empirical codon substitution matrix Schneider, Adrian
2005
6 1 artikel
112 ErmineJ: Tool for functional analysis of gene expression data sets Lee, Homin K
2005
6 1 artikel
113 Evaluating concentration estimation errors in ELISA microarray experiments Daly, Don Simone
2005
6 1 artikel
114 Evaluating eukaryotic secreted protein prediction Klee, Eric W
2005
6 1 artikel
115 Evaluation of gene importance in microarray data based upon probability of selection Fu, Li M
2005
6 1 artikel
116 Evaluation of methods for predicting the topology of β-barrel outer membrane proteins and a consensus prediction method Bagos, Pantelis G
2005
6 1 artikel
117 Evaluation of normalization methods for cDNA microarray data by k-NN classification Wu, Wei
2005
6 1 artikel
118 EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments Gelly, Jean-Christophe
2005
6 1 artikel
119 Evolutionary distance estimation and fidelity of pair wise sequence alignment Rosenberg, Michael S
2005
6 1 artikel
120 Evolutionary models for insertions and deletions in a probabilistic modeling framework Rivas, Elena
2005
6 1 artikel
121 Evolutionary programming as a platform for in silico metabolic engineering Patil, Kiran Raosaheb
2005
6 1 artikel
122 Evolutionary sequence analysis of complete eukaryote genomes Blair, Jaime E
2005
6 1 artikel
123 EXPANDER – an integrative program suite for microarray data analysis Shamir, Ron
2005
6 1 artikel
124 Extension of Lander-Waterman theory for sequencing filtered DNA libraries Wendl, Michael C
2005
6 1 artikel
125 FACT – a framework for the functional interpretation of high-throughput experiments Kokocinski, Felix
2005
6 1 artikel
126 Feature selection and classification for microarray data analysis: Evolutionary methods for identifying predictive genes Jirapech-Umpai, Thanyaluk
2005
6 1 artikel
127 Feature selection and nearest centroid classification for protein mass spectrometry Levner, Ilya
2005
6 1 artikel
128 FiatFlux – a software for metabolic flux analysis from 13C-glucose experiments Zamboni, Nicola
2005
6 1 artikel
129 FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform Gouret, Philippe
2005
6 1 artikel
130 Filtering high-throughput protein-protein interaction data using a combination of genomic features Patil, Ashwini
2005
6 1 artikel
131 Full cyclic coordinate descent: solving the protein loop closure problem in Cα space Boomsma, Wouter
2005
6 1 artikel
132 Functional annotation by identification of local surface similarities: a novel tool for structural genomics Ferrè, Fabrizio
2005
6 1 artikel
133 GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA Beiko, Robert G
2005
6 1 artikel
134 GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures Standley, Daron M
2005
6 1 artikel
135 GATA: a graphic alignment tool for comparative sequence analysis Nix, David A
2005
6 1 artikel
136 GenClust: A genetic algorithm for clustering gene expression data Di Gesú, Vito
2005
6 1 artikel
137 Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries Wang, Ji-Ping Z
2005
6 1 artikel
138 Gene finding in the chicken genome Eyras, Eduardo
2005
6 1 artikel
139 GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments Kirov, SA
2005
6 1 artikel
140 GeneNotes – A novel information management software for biologists Hong, Pengyu
2005
6 1 artikel
141 Generalizations of Markov model to characterize biological sequences Wang, Junwen
2005
6 1 artikel
142 GeneRank: Using search engine technology for the analysis of microarray experiments Morrison, Julie L
2005
6 1 artikel
143 Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method Peters, Bjoern
2005
6 1 artikel
144 Genetic interaction motif finding by expectation maximization – a novel statistical model for inferring gene modules from synthetic lethality Qi, Yan
2005
6 1 artikel
145 Genome comparison without alignment using shortest unique substrings Haubold, Bernhard
2005
6 1 artikel
146 Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns" Larsabal, Etienne
2005
6 1 artikel
147 Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis Jolly, Emmitt R
2005
6 1 artikel
148 Genomic multiple sequence alignments: refinement using a genetic algorithm Wang, Chunlin
2005
6 1 artikel
149 GObar: A Gene Ontology based analysis and visualization tool for gene sets Lee, Jason SM
2005
6 1 artikel
150 Graphical representation of ribosomal RNA probe accessibility data using ARB software package Kumar, Yadhu
2005
6 1 artikel
151 Graph-representation of oxidative folding pathways Ágoston, Vilmos
2005
6 1 artikel
152 Harshlight: a "corrective make-up" program for microarray chips Suárez-Fariñas, Mayte
2005
6 1 artikel
153 "Harshlighting" small blemishes on microarrays Suárez-Fariñas, Mayte
2005
6 1 artikel
154 HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data Trivedi, Prinal
2005
6 1 artikel
155 High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID) Zeeberg, Barry R
2005
6 1 artikel
156 htSNPer1.0: software for haplotype block partition and htSNPs selection Ding, Keyue
2005
6 1 artikel
157 Human promoter genomic composition demonstrates non-random groupings that reflect general cellular function McNutt, Markey C
2005
6 1 artikel
158 Identification of clustered microRNAs using an ab initio prediction method Sewer, Alain
2005
6 1 artikel
159 Identification of novel prognostic markers in cervical intraepithelial neoplasia using LDMAS (LOH Data Management and Analysis Software) Hamoudi, Rifat A
2005
6 1 artikel
160 Identification of significant periodic genes in microarray gene expression data Chen, Jie
2005
6 1 artikel
161 Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach Lu, Jun
2005
6 1 artikel
162 Improved prediction of critical residues for protein function based on network and phylogenetic analyses Thibert, Boris
2005
6 1 artikel
163 Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER Wistrand, Markus
2005
6 1 artikel
164 Inconsistencies over time in 5% of NetAffx probe-to-gene annotations Perez-Iratxeta, Carolina
2005
6 1 artikel
165 Individual sequences in large sets of gene sequences may be distinguished efficiently by combinations of shared sub-sequences Gibbs, Mark J
2005
6 1 artikel
166 Information theory-based algorithm for in silico prediction of PCR products with whole genomic sequences as templates Cao, Youfang
2005
6 1 artikel
167 In silico microdissection of microarray data from heterogeneous cell populations Lähdesmäki, Harri
2005
6 1 artikel
168 Integrating alternative splicing detection into gene prediction Foissac, Sylvain
2005
6 1 artikel
169 Integration of the Gene Ontology into an object-oriented architecture Shegogue, Daniel
2005
6 1 artikel
170 Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models Hu, Pingzhao
2005
6 1 artikel
171 InterferenceAnalyzer: Tools for the analysis and simulation of multi-locus genetic data Viswanath, Lalitha
2005
6 1 artikel
172 Internet-based profiler system as integrative framework to support translational research Kim, Robert
2005
6 1 artikel
173 Iterative approach to model identification of biological networks Gadkar, Kapil G
2005
6 1 artikel
174 JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture Sperisen, Peter
2005
6 1 artikel
175 JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases Feng, Guangjie
2005
6 1 artikel
176 Kalign – an accurate and fast multiple sequence alignment algorithm Lassmann, Timo
2005
6 1 artikel
177 Large scale hierarchical clustering of protein sequences Krause, Antje
2005
6 1 artikel
178 libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny Butt, Davin
2005
6 1 artikel
179 Linking enzyme sequence to function using conserved property difference locator to identify and annotate positions likely to control specific functionality Mayer, Kimberly M
2005
6 1 artikel
180 Many accurate small-discriminatory feature subsets exist in microarray transcript data: biomarker discovery Grate, Leslie R
2005
6 1 artikel
181 MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes Marinescu, Voichita D
2005
6 1 artikel
182 MARS: Microarray analysis, retrieval, and storage system Maurer, Michael
2005
6 1 artikel
183 MASQOT: a method for cDNA microarray spot quality control Bylesjö, Max
2005
6 1 artikel
184 Mathematical design of prokaryotic clone-based microarrays Pieterse, Bart
2005
6 1 artikel
185 maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination Hancock, David
2005
6 1 artikel
186 MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution Cai, James J
2005
6 1 artikel
187 Measuring similarities between transcription factor binding sites Kielbasa, Szymon M
2005
6 1 artikel
188 Micro-Mar: a database for dynamic representation of marine microbial biodiversity Pushker, Ravindra
2005
6 1 artikel
189 MILANO – custom annotation of microarray results using automatic literature searches Rubinstein, Ran
2005
6 1 artikel
190 MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data Navarange, Mahendra
2005
6 1 artikel
191 Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software Soula, Hédi
2005
6 1 artikel
192 Modelling the correlation between the activities of adjacent genes in drosophila Thygesen, Helene H
2005
6 1 artikel
193 MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays Rouchka, Eric C
2005
6 1 artikel
194 Multiple sequence alignment accuracy and evolutionary distance estimation Rosenberg, Michael S
2005
6 1 artikel
195 Multiple sequence alignments of partially coding nucleic acid sequences Stocsits, Roman R
2005
6 1 artikel
196 Non-linear mapping for exploratory data analysis in functional genomics Azuaje, Francisco
2005
6 1 artikel
197 Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments Gao, Xin
2005
6 1 artikel
198 Normal uniform mixture differential gene expression detection for cDNA microarrays Dean, Nema
2005
6 1 artikel
199 Oligomeric protein structure networks: insights into protein-protein interactions Brinda, KV
2005
6 1 artikel
200 Ontological visualization of protein-protein interactions Drabkin, Harold J
2005
6 1 artikel
201 Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data Baty, Florent
2005
6 1 artikel
202 'PACLIMS': A component LIM system for high-throughput functional genomic analysis Donofrio, Nicole
2005
6 1 artikel
203 PAGE: Parametric Analysis of Gene Set Enrichment Kim, Seon-Young
2005
6 1 artikel
204 Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison Brown, C Titus
2005
6 1 artikel
205 PALSSE: A program to delineate linear secondary structural elements from protein structures Majumdar, Indraneel
2005
6 1 artikel
206 Pathway level analysis of gene expression using singular value decomposition Tomfohr, John
2005
6 1 artikel
207 PentaPlot: A software tool for the illustration of genome mosaicism Hamel, Lutz
2005
6 1 artikel
208 PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information Angly, Florent
2005
6 1 artikel
209 Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis Enault, François
2005
6 1 artikel
210 Phylogenetic detection of conserved gene clusters in microbial genomes Zheng, Yu
2005
6 1 artikel
211 Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data Rossnes, Roald
2005
6 1 artikel
212 Predicting functional sites with an automated algorithm suitable for heterogeneous datasets La, David
2005
6 1 artikel
213 Prediction of a common structural scaffold for proteasome lid, COP9-signalosome and eIF3 complexes Scheel, Hartmut
2005
6 1 artikel
214 Prediction of β-barrel membrane proteins by searching for restricted domains Mirus, Oliver
2005
6 1 artikel
215 Prediction of twin-arginine signal peptides Bendtsen, Jannick Dyrløv
2005
6 1 artikel
216 PREP-Mt: predictive RNA editor for plant mitochondrial genes Mower, Jeffrey P
2005
6 1 artikel
217 Principal component analysis for predicting transcription-factor binding motifs from array-derived data Liu, Yunlong
2005
6 1 artikel
218 Probabilistic annotation of protein sequences based on functional classifications Levy, Emmanuel D
2005
6 1 artikel
219 ProbeMaker: an extensible framework for design of sets of oligonucleotide probes Stenberg, Johan
2005
6 1 artikel
220 Processing methods for differential analysis of LC/MS profile data Katajamaa, Mikko
2005
6 1 artikel
221 ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins Ohlson, Tomas
2005
6 1 artikel
222 ProGenExpress: Visualization of quantitative data on prokaryotic genomes Watson, Michael
2005
6 1 artikel
223 Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines Wang, Jiren
2005
6 1 artikel
224 Proteins with two SUMO-like domains in chromatin-associated complexes: The RENi (Rad60-Esc2-NIP45) family Novatchkova, Maria
2005
6 1 artikel
225 Providing visualisation support for the analysis of anatomy ontology data Dadzie, Aba-Sah
2005
6 1 artikel
226 PSE: A tool for browsing a large amount of MEDLINE/PubMed abstracts with gene names and common words as the keywords Yoneya, Takashi
2005
6 1 artikel
227 PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability Margelevičius, Mindaugas
2005
6 1 artikel
228 pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties Sarda, Deepak
2005
6 1 artikel
229 PSSM-based prediction of DNA binding sites in proteins Ahmad, Shandar
2005
6 1 artikel
230 Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments Liu, Hua
2005
6 1 artikel
231 Quality assessment of microarrays: Visualization of spatial artifacts and quantitation of regional biases Reimers, Mark
2005
6 1 artikel
232 Quality determination and the repair of poor quality spots in array experiments Tom, Brian DM
2005
6 1 artikel
233 Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein Liu, Jiajian
2005
6 1 artikel
234 Quantitative inference of dynamic regulatory pathways via microarray data Chang, Wen-Chieh
2005
6 1 artikel
235 Ranking the whole MEDLINE database according to a large training set using text indexing Suomela, Brian P
2005
6 1 artikel
236 Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data Jain, Nitin
2005
6 1 artikel
237 Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches Whitney, Joe
2005
6 1 artikel
238 Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements Carter, Scott L
2005
6 1 artikel
239 Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals Reneker, Jeff
2005
6 1 artikel
240 Robust detection of periodic time series measured from biological systems Ahdesmäki, Miika
2005
6 1 artikel
241 Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using Isomap, a nonlinear algorithm Dawson, Kevin
2005
6 1 artikel
242 Satellog: A database for the identification and prioritization of satellite repeats in disease association studies Missirlis, Perseus I
2005
6 1 artikel
243 Scoredist: A simple and robust protein sequence distance estimator Sonnhammer, Erik LL
2005
6 1 artikel
244 Scoring functions for transcription factor binding site prediction Friberg, Markus
2005
6 1 artikel
245 Selecting additional tag SNPs for tolerating missing data in genotyping Huang, Yao-Ting
2005
6 1 artikel
246 SeqDoC: rapid SNP and mutation detection by direct comparison of DNA sequence chromatograms Crowe, Mark L
2005
6 1 artikel
247 Sequence signature analysis of chromosome identity in three Drosophila species Stenberg, Per
2005
6 1 artikel
248 Sequence variation in ligand binding sites in proteins Magliery, Thomas J
2005
6 1 artikel
249 SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures Biro, Jan C
2005
6 1 artikel
250 Shortest triplet clustering: reconstructing large phylogenies using representative sets Sy Vinh, Le
2005
6 1 artikel
251 Signal transduction pathway profiling of individual tumor samples Breslin, Thomas
2005
6 1 artikel
252 SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution Pang, Andy
2005
6 1 artikel
253 SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management Wang, Lin
2005
6 1 artikel
254 SNP-VISTA: An interactive SNP visualization tool Shah, Nameeta
2005
6 1 artikel
255 Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test Abnizova, Irina
2005
6 1 artikel
256 Sources of variation in Affymetrix microarray experiments Zakharkin, Stanislav O
2005
6 1 artikel
257 SPdb – a signal peptide database Choo, Khar Heng
2005
6 1 artikel
258 Species-specific analysis of protein sequence motifs using mutual information Hummel, Jan
2005
6 1 artikel
259 SpectralNET – an application for spectral graph analysis and visualization Forman, Joshua J
2005
6 1 artikel
260 Speeding disease gene discovery by sequence based candidate prioritization Adie, Euan A
2005
6 1 artikel
261 SplitTester : software to identify domains responsible for functional divergence in protein family Gao, Xiang
2005
6 1 artikel
262 Squid – a simple bioinformatics grid Carvalho, Paulo C
2005
6 1 artikel
263 stam – a Bioconductor compliant R package for structured analysis of microarray data Lottaz, Claudio
2005
6 1 artikel
264 Statistical distributions of optimal global alignment scores of random protein sequences Pang, Hongxia
2005
6 1 artikel
265 Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser Stenger, Judith E
2005
6 1 artikel
266 Storing, linking, and mining microarray databases using SRS Veldhoven, Antoine
2005
6 1 artikel
267 Structural comparison of metabolic networks in selected single cell organisms Zhu, Dongxiao
2005
6 1 artikel
268 SUPERFICIAL – Surface mapping of proteins via structure-based peptide library design Goede, Andrean
2005
6 1 artikel
269 SuperLigands – a database of ligand structures derived from the Protein Data Bank Michalsky, Elke
2005
6 1 artikel
270 Super paramagnetic clustering of protein sequences Tetko, Igor V
2005
6 1 artikel
271 Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops Chiapello, H
2005
6 1 artikel
272 Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks Wolfe, Cecily J
2005
6 1 artikel
273 Tandem machine learning for the identification of genes regulated by transcription factors Dinakarpandian, Deendayal
2005
6 1 artikel
274 The distance-profile representation and its application to detection of distantly related protein families Ku, Chin-Jen
2005
6 1 artikel
275 The effects of normalization on the correlation structure of microarray data Qiu, Xing
2005
6 1 artikel
276 The Gene Set Builder: collation, curation, and distribution of sets of genes Yusuf, Dimas
2005
6 1 artikel
277 Theme discovery from gene lists for identification and viewing of multiple functional groups Pehkonen, Petri
2005
6 1 artikel
278 The modeled structure of the RNA dependent RNA polymerase of GBV-C Virus suggests a role for motif E in Flaviviridae RNA polymerases Ferron, François
2005
6 1 artikel
279 The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications Moreland, John L
2005
6 1 artikel
280 The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function Kosinski, Jan
2005
6 1 artikel
281 Thesaurus-based disambiguation of gene symbols Schijvenaars, Bob JA
2005
6 1 artikel
282 The Use of Edge-Betweenness Clustering to Investigate Biological Function in Protein Interaction Networks Dunn, Ruth
2005
6 1 artikel
283 The yeast kinome displays scale free topology with functional hub clusters Lee, Robin EC
2005
6 1 artikel
284 T.I.M.S: TaqMan Information Management System, tools to organize data flow in a genotyping laboratory Monnier, Stéphanie
2005
6 1 artikel
285 TmaDB: a repository for tissue microarray data Sharma-Oates, Archana
2005
6 1 artikel
286 TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins Garrow, Andrew G
2005
6 1 artikel
287 Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection Reiss, David J
2005
6 1 artikel
288 Towards precise classification of cancers based on robust gene functional expression profiles Guo, Zheng
2005
6 1 artikel
289 transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences Bininda-Emonds, Olaf RP
2005
6 1 artikel
290 Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process Wolski, Witold E
2005
6 1 artikel
291 Two-part permutation tests for DNA methylation and microarray data Neuhäuser, Markus
2005
6 1 artikel
292 Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling Freyhult, Eva
2005
6 1 artikel
293 Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts Cohen, AM
2005
6 1 artikel
294 Using hexamers to predict cis-regulatory motifs in Drosophila Chan, Bob Y
2005
6 1 artikel
295 Using large-scale perturbations in gene network reconstruction MacCarthy, Thomas
2005
6 1 artikel
296 Variation in structural location and amino acid conservation of functional sites in protein domain families Pils, Birgit
2005
6 1 artikel
297 Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds Breitling, Rainer
2005
6 1 artikel
298 Versatile and declarative dynamic programming using pair algebras Steffen, Peter
2005
6 1 artikel
299 Vestige: Maximum likelihood phylogenetic footprinting Wakefield, Matthew J
2005
6 1 artikel
300 Visualization-based discovery and analysis of genomic aberrations in microarray data Myers, Chad L
2005
6 1 artikel
301 Visualization methods for statistical analysis of microarray clusters Hibbs, Matthew A
2005
6 1 artikel
302 Visualization of comparative genomic analyses by BLAST score ratio Rasko, David A
2005
6 1 artikel
303 WebArray: an online platform for microarray data analysis Xia, Xiaoqin
2005
6 1 artikel
304 WEBnm@: a web application for normal mode analyses of proteins Hollup, Siv Midtun
2005
6 1 artikel
305 wFleaBase: the Daphnia genome database Colbourne, John K
2005
6 1 artikel
306 Which gene did you mean? Mons, Barend
2005
6 1 artikel
307 Wildfire: distributed, Grid-enabled workflow construction and execution Tang, Francis
2005
6 1 artikel
308 Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST) Dowd, Scot E
2005
6 1 artikel
309 Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator Garcia Castro, Alexander
2005
6 1 artikel
310 YANA – a software tool for analyzing flux modes, gene-expression and enzyme activities Schwarz, Roland
2005
6 1 artikel
                             310 gevonden resultaten
 
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