| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A balanced iterative random forest for gene selection from microarray data
|
Anaissi, Ali
|
|
2013
|
14 |
1 |
|
artikel
|
| 2 |
A Bayesian method and its variational approximation for prediction of genomic breeding values in multiple traits
|
Hayashi, Takeshi
|
|
2013
|
14 |
1 |
|
artikel
|
| 3 |
A benchmark server using high resolution protein structure data, and benchmark results for membrane helix predictions
|
Rath, Emma M
|
|
2013
|
14 |
1 |
|
artikel
|
| 4 |
Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data
|
Bao, Yanchun
|
|
2013
|
14 |
1 |
|
artikel
|
| 5 |
ACG: rapid inference of population history from recombining nucleotide sequences
|
O'Fallon, Brendan D
|
|
2013
|
14 |
1 |
|
artikel
|
| 6 |
A comparison of methods for differential expression analysis of RNA-seq data
|
Soneson, Charlotte
|
|
2013
|
14 |
1 |
|
artikel
|
| 7 |
A comparison study of succinct data structures for use in GWAS
|
Putnam, Patrick P
|
|
2013
|
14 |
1 |
|
artikel
|
| 8 |
A computational method for detecting copy number variations using scale-space filtering
|
Lee, Jongkeun
|
|
2013
|
14 |
1 |
|
artikel
|
| 9 |
Active subnetwork recovery with a mechanism-dependent scoring function; with application to angiogenesis and organogenesis studies
|
Lichtenstein, Ilana
|
|
2013
|
14 |
1 |
|
artikel
|
| 10 |
Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition
|
Marczyk, Michal
|
|
2013
|
14 |
1 |
|
artikel
|
| 11 |
A decision theory paradigm for evaluating identifier mapping and filtering methods using data integration
|
Day, Roger S
|
|
2013
|
14 |
1 |
|
artikel
|
| 12 |
A detailed error analysis of 13 kernel methods for protein–protein interaction extraction
|
Tikk, Domonkos
|
|
2013
|
14 |
1 |
|
artikel
|
| 13 |
A distance-field based automatic neuron tracing method
|
Yang, Jinzhu
|
|
2013
|
14 |
1 |
|
artikel
|
| 14 |
Advances in the REDCAT software package
|
Schmidt, Chris
|
|
2013
|
14 |
1 |
|
artikel
|
| 15 |
A fast least-squares algorithm for population inference
|
Parry, R Mitchell
|
|
2013
|
14 |
1 |
|
artikel
|
| 16 |
A fast weak motif-finding algorithm based on community detection in graphs
|
Jia, Caiyan
|
|
2013
|
14 |
1 |
|
artikel
|
| 17 |
A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments
|
Esnaola, Mikel
|
|
2013
|
14 |
1 |
|
artikel
|
| 18 |
A flexible statistical model for alignment of label-free proteomics data – incorporating ion mobility and product ion information
|
Benjamin, Ashlee M
|
|
2013
|
14 |
1 |
|
artikel
|
| 19 |
A flood-based information flow analysis and network minimization method for gene regulatory networks
|
Pavlogiannis, Andreas
|
|
2013
|
14 |
1 |
|
artikel
|
| 20 |
afterParty: turning raw transcriptomes into permanent resources
|
Jones, Martin
|
|
2013
|
14 |
1 |
|
artikel
|
| 21 |
Agalma: an automated phylogenomics workflow
|
Dunn, Casey W
|
|
2013
|
14 |
1 |
|
artikel
|
| 22 |
Age-adjusted nonparametric detection of differential DNA methylation with case–control designs
|
Huang, Hanwen
|
|
2013
|
14 |
1 |
|
artikel
|
| 23 |
A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data
|
DeJesus, Michael A
|
|
2013
|
14 |
1 |
|
artikel
|
| 24 |
A hybrid short read mapping accelerator
|
Chen, Yupeng
|
|
2013
|
14 |
1 |
|
artikel
|
| 25 |
Alternate virtual populations elucidate the type I interferon signature predictive of the response to rituximab in rheumatoid arthritis
|
Schmidt, Brian J
|
|
2013
|
14 |
1 |
|
artikel
|
| 26 |
A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis
|
Zhang, Wenlu
|
|
2013
|
14 |
1 |
|
artikel
|
| 27 |
A metadata-aware application for remote scoring and exchange of tissue microarray images
|
Morris, Lorna
|
|
2013
|
14 |
1 |
|
artikel
|
| 28 |
A method to identify differential expression profiles of time-course gene data with Fourier transformation
|
Kim, Jaehee
|
|
2013
|
14 |
1 |
|
artikel
|
| 29 |
A modular framework for biomedical concept recognition
|
Campos, David
|
|
2013
|
14 |
1 |
|
artikel
|
| 30 |
A molecular model of the full-length human NOD-like receptor family CARD domain containing 5 (NLRC5) protein
|
Mótyán, János András
|
|
2013
|
14 |
1 |
|
artikel
|
| 31 |
A multiple-alignment based primer design algorithm for genetically highly variable DNA targets
|
Brodin, Johanna
|
|
2013
|
14 |
1 |
|
artikel
|
| 32 |
Analysis of multiple phenotypes in genome-wide genetic mapping studies
|
Suo, Chen
|
|
2013
|
14 |
1 |
|
artikel
|
| 33 |
An AUC-based permutation variable importance measure for random forests
|
Janitza, Silke
|
|
2013
|
14 |
1 |
|
artikel
|
| 34 |
An automated graphics tool for comparative genomics: the Coulson plot generator
|
Field, Helen I
|
|
2013
|
14 |
1 |
|
artikel
|
| 35 |
An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy
|
Buggenthin, Felix
|
|
2013
|
14 |
1 |
|
artikel
|
| 36 |
An efficient algorithm to perform multiple testing in epistasis screening
|
Lishout, François Van
|
|
2013
|
14 |
1 |
|
artikel
|
| 37 |
An efficient post-hoc integration method improving peak alignment of metabolomics data from GCxGC/TOF-MS
|
Jeong, Jaesik
|
|
2013
|
14 |
1 |
|
artikel
|
| 38 |
A new approach for prediction of tumor sensitivity to targeted drugs based on functional data
|
Berlow, Noah
|
|
2013
|
14 |
1 |
|
artikel
|
| 39 |
A new unsupervised gene clustering algorithm based on the integration of biological knowledge into expression data
|
Verbanck, Marie
|
|
2013
|
14 |
1 |
|
artikel
|
| 40 |
An improved method to detect correct protein folds using partial clustering
|
Zhou, Jianjun
|
|
2013
|
14 |
1 |
|
artikel
|
| 41 |
An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis
|
Zou, Chuanxin
|
|
2013
|
14 |
1 |
|
artikel
|
| 42 |
An inferential framework for biological network hypothesis tests
|
Yates, Phillip D
|
|
2013
|
14 |
1 |
|
artikel
|
| 43 |
An integrated pharmacokinetics ontology and corpus for text mining
|
Wu, Heng-Yi
|
|
2013
|
14 |
1 |
|
artikel
|
| 44 |
A novel application of motion analysis for detecting stress responses in embryos at different stages of development
|
Tills, Oliver
|
|
2013
|
14 |
1 |
|
artikel
|
| 45 |
A novel approach for protein subcellular location prediction using amino acid exposure
|
Mer, Arvind Singh
|
|
2013
|
14 |
1 |
|
artikel
|
| 46 |
A novel cell nuclei segmentation method for 3D C. elegans embryonic time-lapse images
|
Chen, Long
|
|
2013
|
14 |
1 |
|
artikel
|
| 47 |
A novel method for cross-species gene expression analysis
|
Kristiansson, Erik
|
|
2013
|
14 |
1 |
|
artikel
|
| 48 |
A novel method to assess collagen architecture in skin
|
Osman, Osman S
|
|
2013
|
14 |
1 |
|
artikel
|
| 49 |
A novel phenotypic dissimilarity method for image-based high-throughput screens
|
Zhang, Xian
|
|
2013
|
14 |
1 |
|
artikel
|
| 50 |
A novel strategy for classifying the output from an in silico vaccine discovery pipeline for eukaryotic pathogens using machine learning algorithms
|
Goodswen, Stephen J
|
|
2013
|
14 |
1 |
|
artikel
|
| 51 |
A Parzen window-based approach for the detection of locally enriched transcription factor binding sites
|
Vandenbon, Alexis
|
|
2013
|
14 |
1 |
|
artikel
|
| 52 |
Application of text-mining for updating protein post-translational modification annotation in UniProtKB
|
Veuthey, Anne-Lise
|
|
2013
|
14 |
1 |
|
artikel
|
| 53 |
Archetypal analysis of diverse Pseudomonas aeruginosa transcriptomes reveals adaptation in cystic fibrosis airways
|
Thøgersen, Juliane Charlotte
|
|
2013
|
14 |
1 |
|
artikel
|
| 54 |
ArkMAP: integrating genomic maps across species and data sources
|
Paterson, Trevor
|
|
2013
|
14 |
1 |
|
artikel
|
| 55 |
A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis
|
Tucker, George
|
|
2013
|
14 |
1 |
|
artikel
|
| 56 |
A scalable, knowledge-based analysis framework for genetic association studies
|
Baurley, James W
|
|
2013
|
14 |
1 |
|
artikel
|
| 57 |
A semi-automated genome annotation comparison and integration scheme
|
Liu, Zhe
|
|
2013
|
14 |
1 |
|
artikel
|
| 58 |
A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition
|
Sharma, Alok
|
|
2013
|
14 |
1 |
|
artikel
|
| 59 |
A survey of protein interaction data and multigenic inherited disorders
|
Mora, Antonio
|
|
2013
|
14 |
1 |
|
artikel
|
| 60 |
A systematic comparison of the MetaCyc and KEGG pathway databases
|
Altman, Tomer
|
|
2013
|
14 |
1 |
|
artikel
|
| 61 |
AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures
|
Earls, John C
|
|
2013
|
14 |
1 |
|
artikel
|
| 62 |
Automated analysis of phylogenetic clusters
|
Ragonnet-Cronin, Manon
|
|
2013
|
14 |
1 |
|
artikel
|
| 63 |
Automated image computing reshapes computational neuroscience
|
Peng, Hanchuan
|
|
2013
|
14 |
1 |
|
artikel
|
| 64 |
Automatic extraction of biomolecular interactions: an empirical approach
|
Zhang, Lifeng
|
|
2013
|
14 |
1 |
|
artikel
|
| 65 |
Automatic landmark annotation and dense correspondence registration for 3D human facial images
|
Guo, Jianya
|
|
2013
|
14 |
1 |
|
artikel
|
| 66 |
Automatic workflow for the classification of local DNA conformations
|
Čech, Petr
|
|
2013
|
14 |
1 |
|
artikel
|
| 67 |
Bacterial cell identification in differential interference contrast microscopy images
|
Obara, Boguslaw
|
|
2013
|
14 |
1 |
|
artikel
|
| 68 |
Balony: a software package for analysis of data generated by synthetic genetic array experiments
|
Young, Barry P
|
|
2013
|
14 |
1 |
|
artikel
|
| 69 |
Base calling for high-throughput short-read sequencing: dynamic programming solutions
|
Das, Shreepriya
|
|
2013
|
14 |
1 |
|
artikel
|
| 70 |
Benchmark for multi-cellular segmentation of bright field microscopy images
|
Zaritsky, Assaf
|
|
2013
|
14 |
1 |
|
artikel
|
| 71 |
Benchmarking short sequence mapping tools
|
Hatem, Ayat
|
|
2013
|
14 |
1 |
|
artikel
|
| 72 |
BGFit: management and automated fitting of biological growth curves
|
Veríssimo, André
|
|
2013
|
14 |
1 |
|
artikel
|
| 73 |
BIOCAT: a pattern recognition platform for customizable biological image classification and annotation
|
Zhou, Jie
|
|
2013
|
14 |
1 |
|
artikel
|
| 74 |
BioCause: Annotating and analysing causality in the biomedical domain
|
Mihăilă, Claudiu
|
|
2013
|
14 |
1 |
|
artikel
|
| 75 |
BioCode: Two biologically compatible Algorithms for embedding data in non-coding and coding regions of DNA
|
Haughton, David
|
|
2013
|
14 |
1 |
|
artikel
|
| 76 |
Bioinformatic pipelines in Python with Leaf
|
Napolitano, Francesco
|
|
2013
|
14 |
1 |
|
artikel
|
| 77 |
4273π: Bioinformatics education on low cost ARM hardware
|
Barker, Daniel
|
|
2013
|
14 |
1 |
|
artikel
|
| 78 |
bioNerDS: exploring bioinformatics’ database and software use through literature mining
|
Duck, Geraint
|
|
2013
|
14 |
1 |
|
artikel
|
| 79 |
BioTile, A Perl based tool for the identification of differentially enriched regions in tiling microarray data
|
Guintivano, Jerry
|
|
2013
|
14 |
1 |
|
artikel
|
| 80 |
bioWeb3D: an online webGL 3D data visualisation tool
|
Pettit, Jean-Baptiste
|
|
2013
|
14 |
1 |
|
artikel
|
| 81 |
Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples
|
Mosén-Ansorena, David
|
|
2013
|
14 |
1 |
|
artikel
|
| 82 |
Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching
|
Rehrauer, Hubert
|
|
2013
|
14 |
1 |
|
artikel
|
| 83 |
BOND: Basic OligoNucleotide Design
|
Ilie, Lucian
|
|
2013
|
14 |
1 |
|
artikel
|
| 84 |
Boosting forward-time population genetic simulators through genotype compression
|
Ruths, Troy
|
|
2013
|
14 |
1 |
|
artikel
|
| 85 |
Calcium (Ca2+) waves data calibration and analysis using image processing techniques
|
Milovic, Carlos
|
|
2013
|
14 |
1 |
|
artikel
|
| 86 |
Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data
|
Korneliussen, Thorfinn Sand
|
|
2013
|
14 |
1 |
|
artikel
|
| 87 |
CELDA – an ontology for the comprehensive representation of cells in complex systems
|
Seltmann, Stefanie
|
|
2013
|
14 |
1 |
|
artikel
|
| 88 |
Centroid based clustering of high throughput sequencing reads based on n-mer counts
|
Solovyov, Alexander
|
|
2013
|
14 |
1 |
|
artikel
|
| 89 |
CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes
|
Cheng, Jinkui
|
|
2013
|
14 |
1 |
|
artikel
|
| 90 |
Cheminformatic models based on machine learning for pyruvate kinase inhibitors of Leishmania mexicana
|
Jamal, Salma
|
|
2013
|
14 |
1 |
|
artikel
|
| 91 |
ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking
|
Wu, George
|
|
2013
|
14 |
1 |
|
artikel
|
| 92 |
Classification of protein motifs based on subcellular localization uncovers evolutionary relationships at both sequence and functional levels
|
Parras-Moltó, Marcos
|
|
2013
|
14 |
1 |
|
artikel
|
| 93 |
Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases
|
Wollbrett, Julien
|
|
2013
|
14 |
1 |
|
artikel
|
| 94 |
ClusCo: clustering and comparison of protein models
|
Jamroz, Michal
|
|
2013
|
14 |
1 |
|
artikel
|
| 95 |
Clustering cliques for graph-based summarization of the biomedical research literature
|
Zhang, Han
|
|
2013
|
14 |
1 |
|
artikel
|
| 96 |
Clustering evolving proteins into homologous families
|
Chan, Cheong Xin
|
|
2013
|
14 |
1 |
|
artikel
|
| 97 |
CNV-TV: A robust method to discover copy number variation from short sequencing reads
|
Duan, Junbo
|
|
2013
|
14 |
1 |
|
artikel
|
| 98 |
CoMAGC: a corpus with multi-faceted annotations of gene-cancer relations
|
Lee, Hee-Jin
|
|
2013
|
14 |
1 |
|
artikel
|
| 99 |
Combining MEDLINE and publisher data to create parallel corpora for the automatic translation of biomedical text
|
Jimeno Yepes, Antonio
|
|
2013
|
14 |
1 |
|
artikel
|
| 100 |
Compact representation of k-mer de Bruijn graphs for genome read assembly
|
Rødland, Einar Andreas
|
|
2013
|
14 |
1 |
|
artikel
|
| 101 |
Comparative analysis of microbiome measurement platforms using latent variable structural equation modeling
|
Wu, Xiao
|
|
2013
|
14 |
1 |
|
artikel
|
| 102 |
Comparing a few SNP calling algorithms using low-coverage sequencing data
|
Yu, Xiaoqing
|
|
2013
|
14 |
1 |
|
artikel
|
| 103 |
Comparing somatic mutation-callers: beyond Venn diagrams
|
Kim, Su Yeon
|
|
2013
|
14 |
1 |
|
artikel
|
| 104 |
Comparison and improvement of algorithms for computing minimal cut sets
|
Jungreuthmayer, Christian
|
|
2013
|
14 |
1 |
|
artikel
|
| 105 |
Comparison study on statistical features of predicted secondary structures for protein structural class prediction: From content to position
|
Dai, Qi
|
|
2013
|
14 |
1 |
|
artikel
|
| 106 |
Comprehensive analysis of correlation coefficients estimated from pooling heterogeneous microarray data
|
Almeida-de-Macedo, Márcia M
|
|
2013
|
14 |
1 |
|
artikel
|
| 107 |
Compression-based distance (CBD): a simple, rapid, and accurate method for microbiota composition comparison
|
Yang, Fang
|
|
2013
|
14 |
1 |
|
artikel
|
| 108 |
Computational framework to support integration of biomolecular and clinical data within a translational approach
|
Miyoshi, Newton Shydeo Brandão
|
|
2013
|
14 |
1 |
|
artikel
|
| 109 |
Computational genetic neuroanatomy of the developing mouse brain: dimensionality reduction, visualization, and clustering
|
Ji, Shuiwang
|
|
2013
|
14 |
1 |
|
artikel
|
| 110 |
Computational identification of biologically functional non-hairpin GC-helices in human Argonaute mRNA
|
Dornseifer, Simon
|
|
2013
|
14 |
1 |
|
artikel
|
| 111 |
Computing minimal nutrient sets from metabolic networks via linear constraint solving
|
Eker, Steven
|
|
2013
|
14 |
1 |
|
artikel
|
| 112 |
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout
|
Czauderna, Tobias
|
|
2013
|
14 |
1 |
|
artikel
|
| 113 |
Cophenetic metrics for phylogenetic trees, after Sokal and Rohlf
|
Cardona, Gabriel
|
|
2013
|
14 |
1 |
|
artikel
|
| 114 |
Copy number variation genotyping using family information
|
Chu, Jen-hwa
|
|
2013
|
14 |
1 |
|
artikel
|
| 115 |
cudaMap: a GPU accelerated program for gene expression connectivity mapping
|
McArt, Darragh G
|
|
2013
|
14 |
1 |
|
artikel
|
| 116 |
CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions
|
Liu, Yongchao
|
|
2013
|
14 |
1 |
|
artikel
|
| 117 |
CySBGN: A Cytoscape plug-in to integrate SBGN maps
|
Gonçalves, Emanuel
|
|
2013
|
14 |
1 |
|
artikel
|
| 118 |
DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures
|
Mazandu, Gaston K
|
|
2013
|
14 |
1 |
|
artikel
|
| 119 |
DCE@urLAB: a dynamic contrast-enhanced MRI pharmacokinetic analysis tool for preclinical data
|
Ortuño, Juan E
|
|
2013
|
14 |
1 |
|
artikel
|
| 120 |
Deconvolution of gene expression from cell populations across the C. elegans lineage
|
Burdick, Joshua T
|
|
2013
|
14 |
1 |
|
artikel
|
| 121 |
DepthTools: an R package for a robust analysis of gene expression data
|
Torrente, Aurora
|
|
2013
|
14 |
1 |
|
artikel
|
| 122 |
Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki)
|
Sturgill, David
|
|
2013
|
14 |
1 |
|
artikel
|
| 123 |
Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion
|
Babaei, Sepideh
|
|
2013
|
14 |
1 |
|
artikel
|
| 124 |
Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application)
|
Zhou, Peng
|
|
2013
|
14 |
1 |
|
artikel
|
| 125 |
Detection of attractors of large Boolean networks via exhaustive enumeration of appropriate subspaces of the state space
|
Berntenis, Nikolaos
|
|
2013
|
14 |
1 |
|
artikel
|
| 126 |
Differential expression analysis for paired RNA-seq data
|
Chung, Lisa M
|
|
2013
|
14 |
1 |
|
artikel
|
| 127 |
Differential expression analysis with global network adjustment
|
Gelfond, Jonathan A
|
|
2013
|
14 |
1 |
|
artikel
|
| 128 |
Digital sorting of complex tissues for cell type-specific gene expression profiles
|
Zhong, Yi
|
|
2013
|
14 |
1 |
|
artikel
|
| 129 |
Discovery of novel biomarkers and phenotypes by semantic technologies
|
Trugenberger, Carlo A
|
|
2013
|
14 |
1 |
|
artikel
|
| 130 |
Disk-based k-mer counting on a PC
|
Deorowicz, Sebastian
|
|
2013
|
14 |
1 |
|
artikel
|
| 131 |
Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins
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Craig, Douglas B
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2013
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1 |
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artikel
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| 132 |
D-Light on promoters: a client-server system for the analysis and visualization of cis-regulatory elements
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Laimer, Josef
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2013
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14 |
1 |
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artikel
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| 133 |
DNdisorder: predicting protein disorder using boosting and deep networks
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Eickholt, Jesse
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2013
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14 |
1 |
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artikel
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| 134 |
Drug repositioning for orphan genetic diseases through Conserved Anticoexpressed Gene Clusters (CAGCs)
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Molineris, Ivan
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2013
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14 |
1 |
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artikel
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| 135 |
3DScapeCS: application of three dimensional, parallel, dynamic network visualization in Cytoscape
|
Wang, Qi
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2013
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14 |
1 |
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artikel
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| 136 |
3D time series analysis of cell shape using Laplacian approaches
|
Du, Cheng-Jin
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2013
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14 |
1 |
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artikel
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| 137 |
Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay
|
Pau, Gregoire
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2013
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14 |
1 |
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artikel
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| 138 |
Effects of using coding potential, sequence conservation and mRNA structure conservation for predicting pyrrolysine containing genes
|
Theil Have, Christian
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2013
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14 |
1 |
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artikel
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| 139 |
Efficient algorithms for biological stems search
|
Mi, Tian
|
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2013
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14 |
1 |
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artikel
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| 140 |
Efficient alignment of RNA secondary structures using sparse dynamic programming
|
Zhong, Cuncong
|
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2013
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14 |
1 |
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artikel
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| 141 |
Eliciting candidate anatomical routes for protein interactions: a scenario from endocrine physiology
|
Grenon, Pierre
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2013
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14 |
1 |
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artikel
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| 142 |
Elucidating the crosstalk mechanism between IFN-gamma and IL-6 via mathematical modelling
|
Qi, Yun-feng
|
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2013
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14 |
1 |
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artikel
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| 143 |
Empirical assessment of competitive hybridization and noise in ultra high density canine tiling arrays
|
Willet, Cali E
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2013
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14 |
1 |
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artikel
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| 144 |
Empirical Bayes estimation of posterior probabilities of enrichment: A comparative study of five estimators of the local false discovery rate
|
Yang, Zhenyu
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2013
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14 |
1 |
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artikel
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| 145 |
Empirical Bayesian analysis of paired high-throughput sequencing data with a beta-binomial distribution
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Hardcastle, Thomas J
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2013
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14 |
1 |
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artikel
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| 146 |
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
|
Chen, Edward Y
|
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2013
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14 |
1 |
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artikel
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| 147 |
Ensemble-based prediction of RNA secondary structures
|
Aghaeepour, Nima
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2013
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14 |
1 |
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artikel
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| 148 |
Estimate hidden dynamic profiles of siRNA effect on apoptosis
|
Ueda, Takanori
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2013
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14 |
1 |
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artikel
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| 149 |
Estimation of CpG coverage in whole methylome next-generation sequencing studies
|
van den Oord, Edwin JCG
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2013
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14 |
1 |
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artikel
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| 150 |
Estimation of data-specific constitutive exons with RNA-Seq data
|
Patrick, Ellis
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2013
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14 |
1 |
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artikel
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| 151 |
ETHNOPRED: a novel machine learning method for accurate continental and sub-continental ancestry identification and population stratification correction
|
Hajiloo, Mohsen
|
|
2013
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14 |
1 |
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artikel
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| 152 |
Evaluating the use of different positional strategies for sentence selection in biomedical literature summarization
|
Plaza, Laura
|
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2013
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14 |
1 |
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artikel
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| 153 |
Evaluation of the effectiveness of simple nuclei-segmentation methods on Caenorhabditis elegans embryogenesis images
|
Azuma, Yusuke
|
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2013
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14 |
1 |
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artikel
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| 154 |
Exploring the transcription factor activity in high-throughput gene expression data using RLQ analysis
|
Baty, Florent
|
|
2013
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14 |
1 |
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artikel
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| 155 |
Extending the BEAGLE library to a multi-FPGA platform
|
Jin, Zheming
|
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2013
|
14 |
1 |
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artikel
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| 156 |
FANTOM: Functional and taxonomic analysis of metagenomes
|
Sanli, Kemal
|
|
2013
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14 |
1 |
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artikel
|
| 157 |
Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns
|
Meyer, Fernando
|
|
2013
|
14 |
1 |
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artikel
|
| 158 |
Fastphylo: Fast tools for phylogenetics
|
Khan, Mehmood Alam
|
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2013
|
14 |
1 |
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artikel
|
| 159 |
FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets
|
Pope, Bernard J
|
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2013
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14 |
1 |
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artikel
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| 160 |
Filling out the structural map of the NTF2-like superfamily
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Eberhardt, Ruth Y
|
|
2013
|
14 |
1 |
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artikel
|
| 161 |
Flanking sequence context-dependent transcription factor binding in early Drosophila development
|
Stringham, Jessica L
|
|
2013
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14 |
1 |
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artikel
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| 162 |
Fragment assignment in the cloud with eXpress-D
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Roberts, Adam
|
|
2013
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14 |
1 |
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artikel
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| 163 |
FUSIM: a software tool for simulating fusion transcripts
|
Bruno, Andrew E
|
|
2013
|
14 |
1 |
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artikel
|
| 164 |
FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq
|
Liu, Chenglin
|
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2013
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14 |
1 |
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artikel
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| 165 |
Gel2DE - A software tool for correlation analysis of 2D gel electrophoresis data
|
Øye, Ola Kristoffer
|
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2013
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14 |
1 |
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artikel
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| 166 |
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data
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Gallant, Andrew
|
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2013
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14 |
1 |
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artikel
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| 167 |
Gene expression profiling of breast cancer survivability by pooled cDNA microarray analysis using logistic regression, artificial neural networks and decision trees
|
Chou, Hsiu-Ling
|
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2013
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14 |
1 |
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artikel
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| 168 |
GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures
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Hammesfahr, Björn
|
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2013
|
14 |
1 |
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artikel
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| 169 |
GeneRIF indexing: sentence selection based on machine learning
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Jimeno-Yepes, Antonio J
|
|
2013
|
14 |
1 |
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artikel
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| 170 |
Gene set analysis using variance component tests
|
Huang, Yen-Tsung
|
|
2013
|
14 |
1 |
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artikel
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| 171 |
Gene set bagging for estimating the probability a statistically significant result will replicate
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Jaffe, Andrew E
|
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2013
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14 |
1 |
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artikel
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| 172 |
Genome sequence-based species delimitation with confidence intervals and improved distance functions
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Meier-Kolthoff, Jan P
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2013
|
14 |
1 |
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artikel
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| 173 |
GenPhyloData: realistic simulation of gene family evolution
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Sjöstrand, Joel
|
|
2013
|
14 |
1 |
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artikel
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| 174 |
Gentrepid V2.0: a web server for candidate disease gene prediction
|
Ballouz, Sara
|
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2013
|
14 |
1 |
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artikel
|
| 175 |
Gimli: open source and high-performance biomedical name recognition
|
Campos, David
|
|
2013
|
14 |
1 |
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artikel
|
| 176 |
GOParGenPy: a high throughput method to generate Gene Ontology data matrices
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Kumar, Ajay Anand
|
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2013
|
14 |
1 |
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artikel
|
| 177 |
GRank: a middleware search engine for ranking genes by relevance to given genes
|
Taha, Kamal
|
|
2013
|
14 |
1 |
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artikel
|
| 178 |
Greedy feature selection for glycan chromatography data with the generalized Dirichlet distribution
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Galligan, Marie C
|
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2013
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14 |
1 |
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artikel
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| 179 |
Group sparse canonical correlation analysis for genomic data integration
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Lin, Dongdong
|
|
2013
|
14 |
1 |
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artikel
|
| 180 |
GSVA: gene set variation analysis for microarray and RNA-Seq data
|
Hänzelmann, Sonja
|
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2013
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14 |
1 |
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artikel
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| 181 |
GWAS on your notebook: fast semi-parallel linear and logistic regression for genome-wide association studies
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Sikorska, Karolina
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2013
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14 |
1 |
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artikel
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| 182 |
HASP server: a database and structural visualization platform for comparative models of influenza A hemagglutinin proteins
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Ambroggio, Xavier I
|
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2013
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14 |
1 |
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artikel
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| 183 |
μHEM for identification of differentially expressed miRNAs using hypercuboid equivalence partition matrix
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Paul, Sushmita
|
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2013
|
14 |
1 |
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artikel
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| 184 |
Heterodimeric protein complex identification by naïve Bayes classifiers
|
Maruyama, Osamu
|
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2013
|
14 |
1 |
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artikel
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| 185 |
Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters
|
Hensman, James
|
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2013
|
14 |
1 |
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artikel
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| 186 |
High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: a simulation study
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Hoban, Sean M
|
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2013
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14 |
1 |
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artikel
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| 187 |
How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis
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Lehmann, Robert
|
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2013
|
14 |
1 |
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artikel
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| 188 |
HTQC: a fast quality control toolkit for Illumina sequencing data
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Yang, Xi
|
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2013
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14 |
1 |
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artikel
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| 189 |
HuntMi: an efficient and taxon-specific approach in pre-miRNA identification
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Gudyś, Adam
|
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2013
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14 |
1 |
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artikel
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| 190 |
Identification of germ cell-specific genes in mammalian meiotic prophase
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Li, Yunfei
|
|
2013
|
14 |
1 |
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artikel
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| 191 |
Identification of properties important to protein aggregation using feature selection
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Fang, Yaping
|
|
2013
|
14 |
1 |
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artikel
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| 192 |
Identification of reproducible gene expression signatures in lung adenocarcinoma
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Lu, Tzu-Pin
|
|
2013
|
14 |
1 |
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artikel
|
| 193 |
Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication
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Christensen, Kris A
|
|
2013
|
14 |
1 |
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artikel
|
| 194 |
Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline
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Hadj Khodabakhshi, Alireza
|
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2013
|
14 |
1 |
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artikel
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| 195 |
Image-level and group-level models for Drosophila gene expression pattern annotation
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Sun, Qian
|
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2013
|
14 |
1 |
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artikel
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| 196 |
iMir: An integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq
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Giurato, Giorgio
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2013
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14 |
1 |
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artikel
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| 197 |
Improved shrunken centroid classifiers for high-dimensional class-imbalanced data
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Blagus, Rok
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2013
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14 |
1 |
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artikel
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| 198 |
Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction
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Ge, Ping
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2013
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14 |
1 |
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artikel
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| 199 |
Incorporating time-delays in S-System model for reverse engineering genetic networks
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Chowdhury, Ahsan Raja
|
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2013
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14 |
1 |
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artikel
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| 200 |
Infection status outcome, machine learning method and virus type interact to affect the optimised prediction of hepatitis virus immunoassay results from routine pathology laboratory assays in unbalanced data
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Richardson, Alice M
|
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2013
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14 |
1 |
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artikel
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| 201 |
Inferring microRNA and transcription factor regulatory networks in heterogeneous data
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Le, Thuc D
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2013
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14 |
1 |
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artikel
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| 202 |
inTB - a data integration platform for molecular and clinical epidemiological analysis of tuberculosis
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Soares, Patrícia
|
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2013
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14 |
1 |
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artikel
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| 203 |
Integrative relational machine-learning for understanding drug side-effect profiles
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Bresso, Emmanuel
|
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2013
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14 |
1 |
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artikel
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| 204 |
Investigating the concordance of Gene Ontology terms reveals the intra- and inter-platform reproducibility of enrichment analysis
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Zhang, Lifang
|
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2013
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14 |
1 |
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artikel
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| 205 |
Iterative rank-order normalization of gene expression microarray data
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Welsh, Eric A
|
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2013
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14 |
1 |
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artikel
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| 206 |
JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison
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Seitzer, Phillip
|
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2013
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14 |
1 |
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artikel
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| 207 |
Jenner-predict server: prediction of protein vaccine candidates (PVCs) in bacteria based on host-pathogen interactions
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Jaiswal, Varun
|
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2013
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14 |
1 |
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artikel
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| 208 |
Jimena: efficient computing and system state identification for genetic regulatory networks
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Karl, Stefan
|
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2013
|
14 |
1 |
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artikel
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| 209 |
kClust: fast and sensitive clustering of large protein sequence databases
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Hauser, Maria
|
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2013
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14 |
1 |
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artikel
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| 210 |
Kerfuffle: a web tool for multi-species gene colocalization analysis
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Aboukhalil, Robert
|
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2013
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14 |
1 |
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artikel
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| 211 |
KNIME-CDK: Workflow-driven cheminformatics
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Beisken, Stephan
|
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2013
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14 |
1 |
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artikel
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| 212 |
KNODWAT: A scientific framework application for testing knowledge discovery methods for the biomedical domain
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Holzinger, Andreas
|
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2013
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14 |
1 |
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artikel
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| 213 |
Large-scale extraction of accurate drug-disease treatment pairs from biomedical literature for drug repurposing
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Xu, Rong
|
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2013
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14 |
1 |
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artikel
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| 214 |
Large-scale multiple testing in genome-wide association studies via region-specific hidden Markov models
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Xiao, Jian
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2013
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14 |
1 |
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artikel
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| 215 |
LASAGNA: A novel algorithm for transcription factor binding site alignment
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Lee, Chih
|
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2013
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14 |
1 |
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artikel
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| 216 |
Learning a Markov Logic network for supervised gene regulatory network inference
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Brouard, Céline
|
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2013
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14 |
1 |
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artikel
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| 217 |
Learning a peptide-protein binding affinity predictor with kernel ridge regression
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Giguère, Sébastien
|
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2013
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14 |
1 |
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artikel
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| 218 |
Learning smoothing models of copy number profiles using breakpoint annotations
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Hocking, Toby Dylan
|
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2013
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14 |
1 |
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artikel
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| 219 |
Levenshtein error-correcting barcodes for multiplexed DNA sequencing
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Buschmann, Tilo
|
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2013
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14 |
1 |
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artikel
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| 220 |
Linear combination test for gene set analysis of a continuous phenotype
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Dinu, Irina
|
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2013
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14 |
1 |
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artikel
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| 221 |
Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices
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Lai, Jhih-Siang
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2013
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14 |
1 |
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artikel
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| 222 |
Local search for the generalized tree alignment problem
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Varón, Andrés
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2013
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14 |
1 |
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artikel
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| 223 |
LUD, a new protein domain associated with lactate utilization
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Hwang, William C
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2013
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14 |
1 |
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artikel
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| 224 |
Machine learning methods can replace 3D profile method in classification of amyloidogenic hexapeptides
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Stanislawski, Jerzy
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2013
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14 |
1 |
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artikel
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| 225 |
Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution
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Baele, Guy
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2013
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artikel
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| 226 |
MAPs: a database of modular antibody parts for predicting tertiary structures and designing affinity matured antibodies
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Pantazes, Robert J
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2013
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14 |
1 |
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artikel
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| 227 |
Marmal-aid – a database for Infinium HumanMethylation450
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Lowe, Robert
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2013
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14 |
1 |
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artikel
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| 228 |
MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters
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Deyneko, Igor V
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2013
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14 |
1 |
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artikel
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| 229 |
Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA
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Jajamovich, Guido H
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2013
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14 |
1 |
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artikel
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| 230 |
Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models
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Cotten, Cameron
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2013
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14 |
1 |
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artikel
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| 231 |
Membrane protein orientation and refinement using a knowledge-based statistical potential
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Nugent, Timothy
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2013
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14 |
1 |
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artikel
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| 232 |
MeSH indexing based on automatically generated summaries
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Jimeno-Yepes, Antonio J
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2013
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14 |
1 |
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artikel
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| 233 |
Meta-analysis methods for combining multiple expression profiles: comparisons, statistical characterization and an application guideline
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Chang, Lun-Ching
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2013
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1 |
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artikel
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| 234 |
MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information
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Konwar, Kishori M
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2013
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14 |
1 |
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artikel
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| 235 |
MethylPCA: a toolkit to control for confounders in methylome-wide association studies
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Chen, Wenan
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2013
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14 |
1 |
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artikel
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| 236 |
MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment
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Sun, Shuying
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2013
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14 |
1 |
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artikel
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| 237 |
MetSizeR: selecting the optimal sample size for metabolomic studies using an analysis based approach
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Nyamundanda, Gift
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2013
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14 |
1 |
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artikel
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| 238 |
MFSPSSMpred: identifying short disorder-to-order binding regions in disordered proteins based on contextual local evolutionary conservation
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Fang, Chun
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2013
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14 |
1 |
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artikel
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| 239 |
MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, Cα only models, Alternative alignments, and Non-sequential alignments
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Minami, Shintaro
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2013
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14 |
1 |
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artikel
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| 240 |
MIMO: an efficient tool for molecular interaction maps overlap
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Lena, Pietro Di
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2013
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14 |
1 |
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artikel
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| 241 |
Mining differential top-k co-expression patterns from time course comparative gene expression datasets
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Liu, Yu-Cheng
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2013
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14 |
1 |
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artikel
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| 242 |
Mining for class-specific motifs in protein sequence classification
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Srinivasan, Satish M
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2013
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14 |
1 |
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artikel
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| 243 |
MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements
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Yang, Guojun
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2013
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14 |
1 |
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artikel
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| 244 |
Mobilomics in Saccharomyces cerevisiae strains
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Menconi, Giulia
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2013
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14 |
1 |
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artikel
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| 245 |
Modeling the next generation sequencing sample processing pipeline for the purposes of classification
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Ghaffari, Noushin
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2013
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14 |
1 |
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artikel
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| 246 |
Modelling and visualizing fine-scale linkage disequilibrium structure
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Edwards, David
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2013
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14 |
1 |
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artikel
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| 247 |
Mojo Hand, a TALEN design tool for genome editing applications
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Neff, Kevin L
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2013
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14 |
1 |
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artikel
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| 248 |
More powerful significant testing for time course gene expression data using functional principal component analysis approaches
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Wu, Shuang
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2013
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14 |
1 |
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artikel
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| 249 |
MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis
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Shivanandan, Arun
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2013
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14 |
1 |
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artikel
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| 250 |
MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis
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Klepper, Kjetil
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2013
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14 |
1 |
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artikel
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| 251 |
M-pick, a modularity-based method for OTU picking of 16S rRNA sequences
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Wang, Xiaoyu
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2013
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14 |
1 |
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artikel
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| 252 |
MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis
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LaMarche, Brian L
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2013
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14 |
1 |
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artikel
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| 253 |
MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates
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Bérard, Caroline
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2013
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14 |
1 |
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artikel
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| 254 |
Multiple consensus trees: a method to separate divergent genes
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Guénoche, Alain
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2013
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14 |
1 |
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artikel
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| 255 |
Negated bio-events: analysis and identification
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Nawaz, Raheel
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2013
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14 |
1 |
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artikel
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| 256 |
Network-based differential gene expression analysis suggests cell cycle related genes regulated by E2F1 underlie the molecular difference between smoker and non-smoker lung adenocarcinoma
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Wu, Chao
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2013
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artikel
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| 257 |
NightShift: NMR shift inference by general hybrid model training - a framework for NMR chemical shift prediction
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Dehof, Anna Katharina
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2013
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artikel
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| 258 |
Non-negative matrix factorization by maximizing correntropy for cancer clustering
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Wang, Jim Jing-Yan
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2013
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artikel
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| 259 |
NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data
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Bi, Yingtao
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2013
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artikel
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| 260 |
NURD: an implementation of a new method to estimate isoform expression from non-uniform RNA-seq data
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Ma, Xinyun
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2013
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artikel
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| 261 |
On the amyloid datasets used for training PAFIG how (not) to extend the experimental dataset of hexapeptides
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Kotulska, Malgorzata
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2013
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artikel
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| 262 |
Ontology based molecular signatures for immune cell types via gene expression analysis
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Meehan, Terrence F
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2013
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14 |
1 |
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artikel
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| 263 |
Optimal precursor ion selection for LC-MALDI MS/MS
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Zerck, Alexandra
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2013
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14 |
1 |
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artikel
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| 264 |
Oral cancer prognosis based on clinicopathologic and genomic markers using a hybrid of feature selection and machine learning methods
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Chang, Siow-Wee
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2013
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artikel
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| 265 |
Parametric sensitivity analysis for biochemical reaction networks based on pathwise information theory
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Pantazis, Yannis
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2013
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14 |
1 |
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artikel
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| 266 |
Partial inhibition and bilevel optimization in flux balance analysis
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Facchetti, Giuseppe
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2013
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14 |
1 |
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artikel
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| 267 |
PASTA: splice junction identification from RNA-Sequencing data
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Tang, Shaojun
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2013
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14 |
1 |
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artikel
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| 268 |
Pathway-PDT: a flexible pathway analysis tool for nuclear families
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Park, Yo Son
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2013
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14 |
1 |
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artikel
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Peak Finder Metaserver - a novel application for finding peaks in ChIP-seq data
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Kruczyk, Marcin
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2013
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| 270 |
PFClust: a novel parameter free clustering algorithm
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Mavridis, Lazaros
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2013
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artikel
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Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient
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Stoltzfus, Arlin
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2013
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artikel
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PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites
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Zou, Liang
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2013
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artikel
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| 273 |
PlanktoVision – an automated analysis system for the identification of phytoplankton
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Schulze, Katja
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2013
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artikel
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PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool
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Dai, Xinbin
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2013
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artikel
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PMTED: a plant microRNA target expression database
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Sun, Xiuli
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2013
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artikel
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Predictability of gene ontology slim-terms from primary structure information in Embryophyta plant proteins
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Jaramillo-Garzón, Jorge Alberto
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2013
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artikel
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| 277 |
Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data
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Zhu, Mingzhu
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2013
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14 |
1 |
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artikel
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| 278 |
Predicting PDZ domain mediated protein interactions from structure
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Hui, Shirley
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2013
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14 |
1 |
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artikel
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| 279 |
Predicting substrates of the human breast cancer resistance protein using a support vector machine method
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Hazai, Eszter
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2013
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14 |
1 |
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artikel
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| 280 |
Prediction of a time-to-event trait using genome wide SNP data
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Kim, Jinseog
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2013
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14 |
1 |
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artikel
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| 281 |
Prediction of gene–phenotype associations in humans, mice, and plants using phenologs
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Woods, John O
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2013
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14 |
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artikel
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| 282 |
Prediction of heterogeneous differential genes by detecting outliers to a Gaussian tight cluster
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Yang, Zihua
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2013
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14 |
1 |
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artikel
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| 283 |
Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information
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Panwar, Bharat
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2013
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14 |
1 |
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artikel
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| 284 |
Predictive modeling of anti-malarial molecules inhibiting apicoplast formation
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Jamal, Salma
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2013
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14 |
1 |
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artikel
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| 285 |
PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity
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Oyarzún, Patricio
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2013
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14 |
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artikel
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| 286 |
Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data
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Hong, Changjin
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2013
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14 |
1 |
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artikel
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| 287 |
Processing genome scale tabular data with wormtable
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Kelleher, Jerome
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2013
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14 |
1 |
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artikel
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| 288 |
Protein complex detection using interaction reliability assessment and weighted clustering coefficient
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Zaki, Nazar
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2013
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14 |
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artikel
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| 289 |
Protein structure based prediction of catalytic residues
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Fajardo, J Eduardo
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2013
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14 |
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artikel
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| 290 |
ΔΔPT: a comprehensive toolbox for the analysis of protein motion
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Rodgers, Thomas L
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2013
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artikel
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| 291 |
puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis
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Liu, Xuejun
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2013
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artikel
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| 292 |
QualComp: a new lossy compressor for quality scores based on rate distortion theory
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Ochoa, Idoia
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2013
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Quality control, analysis and secure sharing of Luminex® immunoassay data using the open source LabKey Server platform
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Eckels, Josh
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2013
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14 |
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artikel
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| 294 |
Quantifying single nucleotide variant detection sensitivity in exome sequencing
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Meynert, Alison M
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2013
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artikel
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| 295 |
Quantifying variances in comparative RNA secondary structure prediction
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Anderson, James WJ
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2013
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artikel
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Random forest methodology for model-based recursive partitioning: the mobForest package for R
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Garge, Nikhil R
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2013
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Random generalized linear model: a highly accurate and interpretable ensemble predictor
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Song, Lin
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2013
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Rapid forward-in-time simulation at the chromosome and genome level
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Aberer, Andre J
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2013
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RCircos: an R package for Circos 2D track plots
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Zhang, Hongen
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2013
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| 300 |
RCytoscape: tools for exploratory network analysis
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Shannon, Paul T
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2013
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artikel
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Real-time interactive data mining for chemical imaging information: application to automated histopathology
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Mayerich, David
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2013
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artikel
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| 302 |
Reconciliation-based detection of co-evolving gene families
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Chan, Yao-ban
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2013
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artikel
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| 303 |
Reconstituting protein interaction networks using parameter-dependent domain-domain interactions
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Memišević, Vesna
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2013
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artikel
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| 304 |
Redundancy in electronic health record corpora: analysis, impact on text mining performance and mitigation strategies
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Cohen, Raphael
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2013
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artikel
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| 305 |
Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling
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Song, Yang
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2013
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artikel
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| 306 |
Reverse causal reasoning: applying qualitative causal knowledge to the interpretation of high-throughput data
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Catlett, Natalie L
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2013
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| 307 |
Reviewer acknowledgement 2012
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Rice, Catherine M
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2013
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Robust flux balance analysis of multiscale biochemical reaction networks
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Sun, Yuekai
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2013
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| 309 |
Robust methods for population stratification in genome wide association studies
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Liu, Li
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2013
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Routine performance and errors of 454 HLA exon sequencing in diagnostics
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Niklas, Norbert
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2013
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Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data
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Li, Chung-I
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2013
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ScreenSifter: analysis and visualization of RNAi screening data
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Kumar, Pankaj
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2013
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SDM-Assist software to design site-directed mutagenesis primers introducing “silent” restriction sites
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Karnik, Abhijit
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2013
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search GenBank: interactive orchestration and ad-hoc choreography of Web services in the exploration of the biomedical resources of the National Center For Biotechnology Information
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Mrozek, Dariusz
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2013
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Selecting informative subsets of sparse supermatrices increases the chance to find correct trees
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Misof, Bernhard
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2013
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Semantic representation of monogenean haptoral Bar image annotation
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Abu, Arpah
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2013
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artikel
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| 317 |
Separate-channel analysis of two-channel microarrays: recovering inter-spot information
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Smyth, Gordon K
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2013
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| 318 |
Seq2Ref: a web server to facilitate functional interpretation
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Li, Wenlin
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2013
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SeqSIMLA: a sequence and phenotype simulation tool for complex disease studies
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Chung, Ren-Hua
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2013
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Sequencing error correction without a reference genome
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Sleep, Julie A
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2013
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Similarity maps and hierarchical clustering for annotating FT-IR spectral images
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Zhong, Qiaoyong
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2013
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SLiMScape: a protein short linear motif analysis plugin for Cytoscape
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O’Brien, Kevin T
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2013
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SMOTE for high-dimensional class-imbalanced data
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Blagus, Rok
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2013
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artikel
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| 324 |
Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms
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Doran, Anthony G
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2013
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snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing
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Al-Shahib, Ali
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2013
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SNVHMM: predicting single nucleotide variants from next generation sequencing
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Bian, Jiawen
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2013
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Software for selecting the most informative sets of genomic loci for multi-target microbial typing
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O’Sullivan, Matthew VN
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2013
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Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling
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Ahmed, Zeeshan
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2013
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Sparse logistic regression with a L1/2 penalty for gene selection in cancer classification
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Liang, Yong
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2013
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artikel
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| 330 |
SRAdb: query and use public next-generation sequencing data from within R
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Zhu, Yuelin
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2013
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| 331 |
Statistical analysis of dendritic spine distributions in rat hippocampal cultures
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Jammalamadaka, Aruna
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2013
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artikel
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| 332 |
Status quo of annotation of human disease variants
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Venselaar, Hanka
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2013
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Steiner tree methods for optimal sub-network identification: an empirical study
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Sadeghi, Afshin
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2013
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STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation
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Wittkop, Tobias
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2013
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SUNPLIN: Simulation with Uncertainty for Phylogenetic Investigations
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Martins, Wellington S
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2013
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Surface feature based classification of plant organs from 3D laserscanned point clouds for plant phenotyping
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Paulus, Stefan
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2013
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svapls: an R package to correct for hidden factors of variability in gene expression studies
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Chakraborty, Sutirtha
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2013
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SyntTax: a web server linking synteny to prokaryotic taxonomy
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Oberto, Jacques
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2013
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SynTView — an interactive multi-view genome browser for next-generation comparative microorganism genomics
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Lechat, Pierre
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2013
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TCC: an R package for comparing tag count data with robust normalization strategies
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Sun, Jianqiang
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2013
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Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure
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Bakış, Yasin
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2013
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artikel
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The admixture maximum likelihood test to test for association between rare variants and disease phenotypes
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Tyrer, Jonathan P
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2013
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The causal effect of red blood cell folate on genome-wide methylation in cord blood: a Mendelian randomization approach
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Binder, Alexandra M
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2013
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The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics
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de Matos, Paula
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2013
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The evolutionary rate of antibacterial drug targets
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Gladki, Arkadiusz
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2013
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artikel
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The GMOseek matrix: a decision support tool for optimizing the detection of genetically modified plants
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Block, Annette
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2013
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The impact of quantile and rank normalization procedures on the testing power of gene differential expression analysis
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Qiu, Xing
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2013
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The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases
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Moulos, Panagiotis
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2013
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The scoring of poses in protein-protein docking: current capabilities and future directions
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Moal, Iain H
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2013
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The taxonomic name resolution service: an online tool for automated standardization of plant names
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Boyle, Brad
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2013
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TPMS: a set of utilities for querying collections of gene trees
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Bigot, Thomas
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2013
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Transferring functional annotations of membrane transporters on the basis of sequence similarity and sequence motifs
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Barghash, Ahmad
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2013
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Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila
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Coggill, Penelope
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2013
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Unsupervised automated high throughput phenotyping of RNAi time-lapse movies
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Failmezger, Henrik
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2013
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Unsupervised Bayesian linear unmixing of gene expression microarrays
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Bazot, Cécile
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2013
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Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging
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Navlakha, Saket
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2013
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Using ancestral information to detect and localize quantitative trait loci in genome-wide association studies
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Thompson, Katherine L
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2013
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Using cited references to improve the retrieval of related biomedical documents
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Ortuño, Francisco M
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2013
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Using passenger mutations to estimate the timing of driver mutations and identify mutator alterations
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Youn, Ahrim
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2013
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Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction
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Stojanova, Daniela
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2013
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Utilizing protein structure to identify non-random somatic mutations
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Ryslik, Gregory A
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2013
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VaccImm: simulating peptide vaccination in cancer therapy
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von Eichborn, Joachim
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2013
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Variational attenuation correction in two-view confocal microscopy
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Schmidt, Thorsten
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2013
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Viral quasispecies inference from 454 pyrosequencing
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Poh, Wan-Ting
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2013
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virtualArray: a R/bioconductor package to merge raw data from different microarray platforms
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Heider, Andreas
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2013
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WholeCellViz: data visualization for whole-cell models
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Lee, Ruby
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2013
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Wide coverage biomedical event extraction using multiple partially overlapping corpora
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Miwa, Makoto
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2013
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wKinMut: An integrated tool for the analysis and interpretation of mutations in human protein kinases
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Izarzugaza, Jose MG
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xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data
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Uppal, Karan
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2013
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XperimentR: painless annotation of a biological experiment for the laboratory scientist
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Tomlinson, Chris D
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2013
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YHap: a population model for probabilistic assignment of Y haplogroups from re-sequencing data
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Zhang, Fan
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2013
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zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm
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Sand, Andreas
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