Digitale Bibliotheek
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                             497 gevonden resultaten
nr titel auteur tijdschrift jaar jaarg. afl. pagina('s) type
1 A Bayesian model for gene family evolution Liu, Liang
2011
12 1 artikel
2 A Beta-mixture model for dimensionality reduction, sample classification and analysis Laurila, Kirsti
2011
12 1 artikel
3 Accelerated large-scale multiple sequence alignment Lloyd, Scott
2011
12 1 artikel
4 Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling Wolfsheimer, Stefan
2011
12 1 artikel
5 A comparative study on gene-set analysis methods for assessing differential expression associated with the survival phenotype Lee, Seungyeoun
2011
12 1 artikel
6 A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment Guo, Yufan
2011
12 1 artikel
7 A comparison of the functional modules identified from time course and static PPI network data Tang, Xiwei
2011
12 1 artikel
8 A Computational Framework for Proteome-Wide Pursuit and Prediction of Metalloproteins using ICP-MS and MS/MS Data Lancaster, W Andrew
2011
12 1 artikel
9 Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface Sroka, Jacek
2011
12 1 artikel
10 ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra Hinkelmann, Franziska
2011
12 1 artikel
11 A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models Bernardes, Juliana S
2011
12 1 artikel
12 A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data González, Juan R
2011
12 1 artikel
13 A flexible framework for sparse simultaneous component based data integration Van Deun, Katrijn
2011
12 1 artikel
14 A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method Luna, Augustin
2011
12 1 artikel
15 A fully automatic gridding method for cDNA microarray images Rueda, Luis
2011
12 1 artikel
16 A genetic algorithm-Bayesian network approach for the analysis of metabolomics and spectroscopic data: application to the rapid identification of Bacillus spores and classification of Bacillus species Correa, Elon
2011
12 1 artikel
17 A hidden two-locus disease association pattern in genome-wide association studies Yang, Can
2011
12 1 artikel
18 A hierarchical Bayesian network approach for linkage disequilibrium modeling and data-dimensionality reduction prior to genome-wide association studies Mourad, Raphaël
2011
12 1 artikel
19 AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations Defoin-Platel, Michael
2011
12 1 artikel
20 Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data Lopez, David
2011
12 1 artikel
21 Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees Izquierdo-Carrasco, Fernando
2011
12 1 artikel
22 A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines Cieślik, Marcin
2011
12 1 artikel
23 AlignHUSH: Alignment of HMMs using structure and hydrophobicity information Krishnadev, Oruganty
2011
12 1 artikel
24 AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS Takahashi, Hiroki
2011
12 1 artikel
25 A mixture model with a reference-based automatic selection of components for disease classification from protein and/or gene expression levels Kopriva, Ivica
2011
12 1 artikel
26 A motif-independent metric for DNA sequence specificity Pinello, Luca
2011
12 1 artikel
27 A multifaceted analysis of HIV-1 protease multidrug resistance phenotypes Doherty, Kathleen M
2011
12 1 artikel
28 A mutation degree model for the identification of transcriptional regulatory elements Zhang, Changqing
2011
12 1 artikel
29 An active learning based classification strategy for the minority class problem: application to histopathology annotation Doyle, Scott
2011
12 1 artikel
30 An Agent-Based Model to study the epidemiological and evolutionary dynamics of Influenza viruses Roche, Benjamin
2011
12 1 artikel
31 Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states Yang, Jialiang
2011
12 1 artikel
32 Analyzing 2D gel images using a two-component empirical bayes model Li, Feng
2011
12 1 artikel
33 An analysis of single amino acid repeats as use case for application specific background models Łabaj, Paweł P
2011
12 1 artikel
34 An application of kernel methods to variety identification based on SSR markers genetic fingerprinting Martin, Florian
2011
12 1 artikel
35 An automated homology-based approach for identifying transposable elements Kennedy, Ryan C
2011
12 1 artikel
36 An empirical Bayes model using a competition score for metabolite identification in gas chromatography mass spectrometry Jeong, Jaesik
2011
12 1 artikel
37 A Network of SCOP Hidden Markov Models and Its Analysis Zhang, Liqing
2011
12 1 artikel
38 A new strategy for better genome assembly from very short reads Ji, Yan
2011
12 1 artikel
39 An integrated ChIP-seq analysis platform with customizable workflows Giannopoulou, Eugenia G
2011
12 1 artikel
40 An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data Vu, Trung N
2011
12 1 artikel
41 An integrative approach to ortholog prediction for disease-focused and other functional studies Hu, Yanhui
2011
12 1 artikel
42 An iterative approach of protein function prediction Chi, Xiaoxiao
2011
12 1 artikel
43 A novel and well-defined benchmarking method for second generation read mapping Holtgrewe, Manuel
2011
12 1 artikel
44 A novel approach to the clustering of microarray data via nonparametric density estimation De Bin, Riccardo
2011
12 1 artikel
45 A novel method to compare protein structures using local descriptors Daniluk, Paweł
2011
12 1 artikel
46 A novel method to identify cooperative functional modules: study of module coordination in the Saccharomyces cerevisiae cell cycle Hsu, Jeh-Ting
2011
12 1 artikel
47 A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships Lemaitre, Claire
2011
12 1 artikel
48 "Antelope": a hybrid-logic model checker for branching-time Boolean GRN analysis Arellano, Gustavo
2011
12 1 artikel
49 AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm Kim, Jihoon
2011
12 1 artikel
50 A parallel method for enumerating amino acid compositions and masses of all theoretical peptides Nefedov, Alexey V
2011
12 1 artikel
51 A Platform for Processing Expression of Short Time Series (PESTS) Sinha, Anshu
2011
12 1 artikel
52 Appearance frequency modulated gene set enrichment testing Ma, Jun
2011
12 1 artikel
53 Application of an efficient Bayesian discretization method to biomedical data Lustgarten, Jonathan L
2011
12 1 artikel
54 Applications of the pipeline environment for visual informatics and genomics computations Dinov, Ivo D
2011
12 1 artikel
55 A quality metric for homology modeling: the H-factor di Luccio, Eric
2011
12 1 artikel
56 A regression system for estimation of errors introduced by confocal imaging into gene expression data in situ Myasnikova, Ekaterina
2011
12 1 artikel
57 ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs Overall, Christopher C
2011
12 1 artikel
58 A scan statistic to extract causal gene clusters from case-control genome-wide rare CNV data Nishiyama, Takeshi
2011
12 1 artikel
59 A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression Kalaitzis, Alfredo A
2011
12 1 artikel
60 ASPDock: protein-protein docking algorithm using atomic solvation parameters model Li, Lin
2011
12 1 artikel
61 Assessing affymetrix GeneChip microarray quality McCall, Matthew N
2011
12 1 artikel
62 Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies Wetzel, Joshua
2011
12 1 artikel
63 Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis Lysenko, Artem
2011
12 1 artikel
64 A systems approach to identifying correlated gene targets for the loss of colour pigmentation in plants Clark, Sangaalofa T
2011
12 1 artikel
65 ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry Brusniak, Mi-Youn K
2011
12 1 artikel
66 A theoretical entropy score as a single value to express inhibitor selectivity Uitdehaag, Joost CM
2011
12 1 artikel
67 A unified framework for managing provenance information in translational research Sahoo, Satya S
2011
12 1 artikel
68 A user-friendly web portal for T-Coffee on supercomputers Rius, Josep
2011
12 1 artikel
69 Automated NMR relaxation dispersion data analysis using NESSY Bieri, Michael
2011
12 1 artikel
70 Bacterial syntenies: an exact approach with gene quorum Deniélou, Yves-Pol
2011
12 1 artikel
71 Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements Cooke, Emma J
2011
12 1 artikel
72 Bayesian semi-supervised classification of bacterial samples using MLST databases Cheng, Lu
2011
12 1 artikel
73 Bias detection and correction in RNA-Sequencing data Zheng, Wei
2011
12 1 artikel
74 Biblio-MetReS: A bibliometric network reconstruction application and server Usié, Anabel
2011
12 1 artikel
75 BICEPP: an example-based statistical text mining method for predicting the binary characteristics of drugs Lin, Frank PY
2011
12 1 artikel
76 Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences Amos-Binks, Adam
2011
12 1 artikel
77 BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results Visser, Ubbo
2011
12 1 artikel
78 Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping Gallone, Giuseppe
2011
12 1 artikel
79 BioIMAX: A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data Loyek, Christian
2011
12 1 artikel
80 Bioinformatics analysis of disordered proteins in prokaryotes Pavlović-Lažetić, Gordana M
2011
12 1 artikel
81 Biomarker Discovery and Redundancy Reduction towards Classification using a Multi-factorial MALDI-TOF MS T2DM Mouse Model Dataset Bauer, Chris
2011
12 1 artikel
82 BioN∅T: A searchable database of biomedical negated sentences Agarwal, Shashank
2011
12 1 artikel
83 BIO::Phylo-phyloinformatic analysis using perl Vos, Rutger A
2011
12 1 artikel
84 BLProt: prediction of bioluminescent proteins based on support vector machine and relieff feature selection Kandaswamy, Krishna Kumar
2011
12 1 artikel
85 Brunn: An open source laboratory information system for microplates with a graphical plate layout design process Alvarsson, Jonathan
2011
12 1 artikel
86 caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts Moffitt, Richard A
2011
12 1 artikel
87 Cancer computational biology Yakhini, Zohar
2011
12 1 artikel
88 CAPL: an efficient association software package using family and case-control data and accounting for population stratification Chung, Ren-Hua
2011
12 1 artikel
89 CASCADE_SCAN: mining signal transduction network from high-throughput data based on steepest descent method Wang, Kai
2011
12 1 artikel
90 CDAO-Store: Ontology-driven Data Integration for Phylogenetic Analysis Chisham, Brandon
2011
12 1 artikel
91 Cell subset prediction for blood genomic studies Bolen, Christopher R
2011
12 1 artikel
92 Characterization of a Bayesian genetic clustering algorithm based on a Dirichlet process prior and comparison among Bayesian clustering methods Onogi, Akio
2011
12 1 artikel
93 Characterizing genetic interactions in human disease association studies using statistical epistasis networks Hu, Ting
2011
12 1 artikel
94 ChIPseqR: analysis of ChIP-seq experiments Humburg, Peter
2011
12 1 artikel
95 Classification of microarrays; synergistic effects between normalization, gene selection and machine learning Önskog, Jenny
2011
12 1 artikel
96 Classification of viral zoonosis through receptor pattern analysis Bae, Se-Eun
2011
12 1 artikel
97 Classifying short genomic fragments from novel lineages using composition and homology Parks, Donovan H
2011
12 1 artikel
98 CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation Kumar, Surendra
2011
12 1 artikel
99 CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing Angiuoli, Samuel V
2011
12 1 artikel
100 Clustering gene expression data with a penalized graph-based metric Bayá, Ariel E
2011
12 1 artikel
101 Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis Frühwirth, Rudolf
2011
12 1 artikel
102 clusterMaker: a multi-algorithm clustering plugin for Cytoscape Morris, John H
2011
12 1 artikel
103 CNV-WebStore: Online CNV Analysis, Storage and Interpretation Vandeweyer, Geert
2011
12 1 artikel
104 CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes Gauthier, Franck
2011
12 1 artikel
105 Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing Prosperi, Mattia CF
2011
12 1 artikel
106 Combining gene prediction methods to improve metagenomic gene annotation Yok, Non G
2011
12 1 artikel
107 Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips Ritchie, Matthew E
2011
12 1 artikel
108 Comparison of lists of genes based on functional profiles Salicrú, Miquel
2011
12 1 artikel
109 Comparison of methods for calculating conditional expectations of sufficient statistics for continuous time Markov chains Tataru, Paula
2011
12 1 artikel
110 compomics-utilities: an open-source Java library for computational proteomics Barsnes, Harald
2011
12 1 artikel
111 Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO database Bickerton, George R
2011
12 1 artikel
112 Computable visually observed phenotype ontological framework for plants Harnsomburana, Jaturon
2011
12 1 artikel
113 Computational study of noise in a large signal transduction network Intosalmi, Jukka
2011
12 1 artikel
114 Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps Fraccalvieri, Domenico
2011
12 1 artikel
115 Conotoxin protein classification using free scores of words and support vector machines Zaki, Nazar
2011
12 1 artikel
116 Consistent Differential Expression Pattern (CDEP) on microarray to identify genes related to metastatic behavior Tsoi, Lam C
2011
12 1 artikel
117 Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response Li, Qiyuan
2011
12 1 artikel
118 Construct and Compare Gene Coexpression Networks with DAPfinder and DAPview Skinner, Jeff
2011
12 1 artikel
119 Constructing a semantic predication gold standard from the biomedical literature Kilicoglu, Halil
2011
12 1 artikel
120 Constructing gene regulatory networks for long term photosynthetic light acclimation in Arabidopsis thaliana Yao, Cheng-Wei
2011
12 1 artikel
121 Context-dependent transcriptional regulations between signal transduction pathways Hwang, Sohyun
2011
12 1 artikel
122 Correlated mutations via regularized multinomial regression Sreekumar, Janardanan
2011
12 1 artikel
123 Cost sensitive hierarchical document classification to triage PubMed abstracts for manual curation Seymour, Emily
2011
12 1 artikel
124 Cross-validated stepwise regression for identification of novel non-nucleoside reverse transcriptase inhibitor resistance associated mutations Van der Borght, Koen
2011
12 1 artikel
125 CSI-OMIM - Clinical Synopsis Search in OMIM Cohen, Raphael
2011
12 1 artikel
126 DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking Tuszynska, Irina
2011
12 1 artikel
127 DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference Jiao, Yan
2011
12 1 artikel
128 DAS Writeback: A Collaborative Annotation System Salazar, Gustavo A
2011
12 1 artikel
129 dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation Wang, Jinlian
2011
12 1 artikel
130 DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI Liu, Yongchao
2011
12 1 artikel
131 DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking Liu, Shiyong
2011
12 1 artikel
132 Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data Szczurek, Ewa
2011
12 1 artikel
133 Detection of Fused Genes in Eukaryotic Genomes using Gene deFuser: Analysis of the Tetrahymena thermophila genome Salim, Hannah MW
2011
12 1 artikel
134 Detection of lineage-specific evolutionary changes among primate species Pertea, Mihaela
2011
12 1 artikel
135 Detection of recurrent rearrangement breakpoints from copy number data Ritz , Anna
2011
12 1 artikel
136 Detection of viral sequence fragments of HIV-1 subfamilies yet unknown Unterthiner, Thomas
2011
12 1 artikel
137 Determinants of antigenicity and specificity in immune response for protein sequences Wang, Yulong
2011
12 1 artikel
138 Deterministic and stochastic population-level simulations of an artificial lac operon genetic network Stamatakis, Michail
2011
12 1 artikel
139 Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series Yuan, Yuan
2011
12 1 artikel
140 Development of a classification scheme for disease-related enzyme information Söhngen, Carola
2011
12 1 artikel
141 Differential C3NET reveals disease networks of direct physical interactions Altay, Gökmen
2011
12 1 artikel
142 Dimension reduction with gene expression data using targeted variable importance measurement Wang, Hui
2011
12 1 artikel
143 Discovering biological connections between experimental conditions based on common patterns of differential gene expression Gower, Adam C
2011
12 1 artikel
144 Discovering time-lagged rules from microarray data using gene profile classifiers Gallo, Cristian A
2011
12 1 artikel
145 Discrimination of approved drugs from experimental drugs by learning methods Tang, Kailin
2011
12 1 artikel
146 Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs Regad, Leslie
2011
12 1 artikel
147 DNACLUST: accurate and efficient clustering of phylogenetic marker genes Ghodsi, Mohammadreza
2011
12 1 artikel
148 DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning Eickholt, Jesse
2011
12 1 artikel
149 Domain architecture conservation in orthologs Forslund, Kristoffer
2011
12 1 artikel
150 DOSim: An R package for similarity between diseases based on Disease Ontology Li, Jiang
2011
12 1 artikel
151 Dr. PIAS: an integrative system for assessing the druggability of protein-protein interactions Sugaya, Nobuyoshi
2011
12 1 artikel
152 Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images Singan, Vasanth R
2011
12 1 artikel
153 Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles Tsai, Richard Tzong-Han
2011
12 1 artikel
154 easyDAS: Automatic creation of DAS servers Gel Moreno, Bernat
2011
12 1 artikel
155 Efficient alignment of pyrosequencing reads for re-sequencing applications Fernandes, Francisco
2011
12 1 artikel
156 Efficient counting of k-mers in DNA sequences using a bloom filter Melsted, Páll
2011
12 1 artikel
157 Efficient α, β-motif finder for identification of phenotype-related functional modules Schmidt, Matthew C
2011
12 1 artikel
158 Elastic SCAD as a novel penalization method for SVM classification tasks in high-dimensional data Becker, Natalia
2011
12 1 artikel
159 Empirical Bayesian models for analysing molecular serotyping microarrays Newton, Richard
2011
12 1 artikel
160 Empirical comparison of cross-platform normalization methods for gene expression data Rudy, Jason
2011
12 1 artikel
161 ENGINES: exploring single nucleotide variation in entire human genomes Amigo, Jorge
2011
12 1 artikel
162 Enhanced peptide quantification using spectral count clustering and cluster abundance Lee, Seungmook
2011
12 1 artikel
163 Enhancements to the ADMIXTURE algorithm for individual ancestry estimation Alexander, David H
2011
12 1 artikel
164 Enriching a biomedical event corpus with meta-knowledge annotation Thompson, Paul
2011
12 1 artikel
165 Enriching for correct prediction of biological processes using a combination of diverse classifiers Ko, Daijin
2011
12 1 artikel
166 EnzymeDetector: an integrated enzyme function prediction tool and database Quester, Susanne
2011
12 1 artikel
167 EPEPT: A web service for enhanced P-value estimation in permutation tests Knijnenburg, Theo A
2011
12 1 artikel
168 Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms Milnthorpe, Andrew T
2011
12 1 artikel
169 Estimating developmental states of tumors and normal tissues using a linear time-ordered model Zhang, Bo
2011
12 1 artikel
170 Estimation of allele frequency and association mapping using next-generation sequencing data Kim, Su Yeon
2011
12 1 artikel
171 Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows Barriuso, Jorge
2011
12 1 artikel
172 Evaluating methods for ranking differentially expressed genes applied to microArray quality control data Kadota, Koji
2011
12 1 artikel
173 Exact score distribution computation for ontological similarity searches Schulz, Marcel H
2011
12 1 artikel
174 eXframe: reusable framework for storage, analysis and visualization of genomics experiments Sinha, Amit U
2011
12 1 artikel
175 Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation Jimeno-Yepes, Antonio J
2011
12 1 artikel
176 Exploratory analysis of genomic segmentations with Segtools Buske, Orion J
2011
12 1 artikel
177 Exploring subdomain variation in biomedical language Lippincott, Thomas
2011
12 1 artikel
178 Expression cartography of human tissues using self organizing maps Wirth, Henry
2011
12 1 artikel
179 Extension of the bayesian alphabet for genomic selection Habier, David
2011
12 1 artikel
180 Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi Axelsson, Elin
2011
12 1 artikel
181 Extracting scientific articles from a large digital archive: BioStor and the Biodiversity Heritage Library Page, Roderic DM
2011
12 1 artikel
182 Extraction of consensus protein patterns in regions containing non-proline cis peptide bonds and their functional assessment Exarchos, Konstantinos P
2011
12 1 artikel
183 FAAST: Flow-space Assisted Alignment Search Tool Lysholm, Fredrik
2011
12 1 artikel
184 FASIMU: flexible software for flux-balance computation series in large metabolic networks Hoppe, Andreas
2011
12 1 artikel
185 Fast empirical Bayesian LASSO for multiple quantitative trait locus mapping Cai, Xiaodong
2011
12 1 artikel
186 Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation Rognes, Torbjørn
2011
12 1 artikel
187 Fast MCMC sampling for hidden markov models to determine copy number variations Mahmud, Md Pavel
2011
12 1 artikel
188 Fast network centrality analysis using GPUs Shi, Zhiao
2011
12 1 artikel
189 FFCA: a feasibility-based method for flux coupling analysis of metabolic networks David, Laszlo
2011
12 1 artikel
190 FIND: A new software tool and development platform for enhanced multicolor flow analysis Dabdoub, Shareef M
2011
12 1 artikel
191 Flexible taxonomic assignment of ambiguous sequencing reads Clemente, José C
2011
12 1 artikel
192 From hybridization theory to microarray data analysis: performance evaluation Berger, Fabrice
2011
12 1 artikel
193 FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins Roche, Daniel B
2011
12 1 artikel
194 Fusion of metabolomics and proteomics data for biomarkers discovery: case study on the experimental autoimmune encephalomyelitis Blanchet, Lionel
2011
12 1 artikel
195 GC-Content Normalization for RNA-Seq Data Risso, Davide
2011
12 1 artikel
196 GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA) Tsugawa, Hiroshi
2011
12 1 artikel
197 GCOD - GeneChip Oncology Database Liu, Fenglong
2011
12 1 artikel
198 Gebiss: an ImageJ plugin for the specification of ground truth and the performance evaluation of 3d segmentation algorithms Kriston-Vizi, Janos
2011
12 1 artikel
199 Gene ontology based transfer learning for protein subcellular localization Mei, Suyu
2011
12 1 artikel
200 Generalized shrinkage F-like statistics for testing an interaction term in gene expression analysis in the presence of heteroscedasticity Yang, Jie
2011
12 1 artikel
201 Gene set analysis for longitudinal gene expression data Zhang, Ke
2011
12 1 artikel
202 Genome-wide algorithm for detecting CNV associations with diseases Xu, Yaji
2011
12 1 artikel
203 Genotype calling in tetraploid species from bi-allelic marker data using mixture models Voorrips, Roeland E
2011
12 1 artikel
204 Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis Dottorini, Tania
2011
12 1 artikel
205 GO-based Functional Dissimilarity of Gene Sets Díaz-Díaz, Norberto
2011
12 1 artikel
206 GOmotif: A web server for investigating the biological role of protein sequence motifs Bristow, Franklin
2011
12 1 artikel
207 GPCR-SSFE: A comprehensive database of G-protein-coupled receptor template predictions and homology models Worth, Catherine L
2011
12 1 artikel
208 GPS-Prot: A web-based visualization platform for integrating host-pathogen interaction data Fahey, Marie E
2011
12 1 artikel
209 Graph based fusion of miRNA and mRNA expression data improves clinical outcome prediction in prostate cancer Gade, Stephan
2011
12 1 artikel
210 GraphCrunch 2: Software tool for network modeling, alignment and clustering Kuchaiev, Oleksii
2011
12 1 artikel
211 GSV: a web-based genome synteny viewer for customized data Revanna, Kashi V
2011
12 1 artikel
212 Haplo2Ped: a tool using haplotypes as markers for linkage analysis Cheng, Feng
2011
12 1 artikel
213 HemeBIND: a novel method for heme binding residue prediction by combining structural and sequence information Liu, Rong
2011
12 1 artikel
214 Hierarchical graphs for rule-based modeling of biochemical systems Lemons, Nathan W
2011
12 1 artikel
215 Hierarchical Parallelization of Gene Differential Association Analysis Needham, Mark
2011
12 1 artikel
216 Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes Zhang, Zhihua
2011
12 1 artikel
217 HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors Zhang, Yuan
2011
12 1 artikel
218 HomPPI: a class of sequence homology based protein-protein interface prediction methods Xue, Li C
2011
12 1 artikel
219 How the gene ontology evolves Leonelli, Sabina
2011
12 1 artikel
220 HTPheno: An image analysis pipeline for high-throughput plant phenotyping Hartmann, Anja
2011
12 1 artikel
221 Hydrophobic pulses predict transmembrane helix irregularities and channel transmembrane units Paulet, Damien
2011
12 1 artikel
222 iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences Zheng, Yi
2011
12 1 artikel
223 iCTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks Wang, Lili
2011
12 1 artikel
224 Identification and correction of systematic error in high-throughput sequence data Meacham, Frazer
2011
12 1 artikel
225 Identification of exonic regions in DNA sequences using cross-correlation and noise suppression by discrete wavelet transform Abbasi, Omid
2011
12 1 artikel
226 Identification of microRNA precursors based on random forest with network-level representation method of stem-loop structure Xiao, Jiamin
2011
12 1 artikel
227 Identification of models of heterogeneous cell populations from population snapshot data Hasenauer, Jan
2011
12 1 artikel
228 Identifier mapping performance for integrating transcriptomics and proteomics experimental results Day, Roger S
2011
12 1 artikel
229 Identifying elemental genomic track types and representing them uniformly Gundersen, Sveinung
2011
12 1 artikel
230 Identifying hypermethylated CpG islands using a quantile regression model Sun, Shuying
2011
12 1 artikel
231 Impact of the spotted microarray preprocessing method on fold-change compression and variance stability Ambroise, Jérôme
2011
12 1 artikel
232 Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection Toofanny, Rudesh D
2011
12 1 artikel
233 Implementation of force distribution analysis for molecular dynamics simulations Stacklies, Wolfram
2011
12 1 artikel
234 Implementing a genomic data management system using iRODS in the Wellcome Trust Sanger Institute Chiang, Gen-Tao
2011
12 1 artikel
235 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation Ren, Xianwen
2011
12 1 artikel
236 Improving ontologies by automatic reasoning and evaluation of logical definitions Köhler, Sebastian
2011
12 1 artikel
237 Improving pan-genome annotation using whole genome multiple alignment Angiuoli, Samuel V
2011
12 1 artikel
238 Improving probe set selection for microbial community analysis by leveraging taxonomic information of training sequences Ruegger, Paul M
2011
12 1 artikel
239 Improving the performance of β-turn prediction using predicted shape strings and a two-layer support vector machine model Tang, Zehui
2011
12 1 artikel
240 Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams Segura, Joan
2011
12 1 artikel
241 Inference of chromosome-specific copy numbers using population haplotypes Huang, Yao-Ting
2011
12 1 artikel
242 Inferring functional modules of protein families with probabilistic topic models Konietzny, Sebastian GA
2011
12 1 artikel
243 Inferring signalling networks from longitudinal data using sampling based approaches in the R-package 'ddepn' Bender, Christian
2011
12 1 artikel
244 In-silico prediction of disorder content using hybrid sequence representation Mizianty, Marcin J
2011
12 1 artikel
245 Integrating GPCR-specific information with full text articles Vroling, Bas
2011
12 1 artikel
246 Integrative set enrichment testing for multiple omics platforms Poisson, Laila M
2011
12 1 artikel
247 Interactive metagenomic visualization in a Web browser Ondov, Brian D
2011
12 1 artikel
248 Investigating the effect of paralogs on microarray gene-set analysis Faure, Andre J
2011
12 1 artikel
249 iPhy: an integrated phylogenetic workbench for supermatrix analyses Jones, Martin O
2011
12 1 artikel
250 IQMNMR: Open source software using time-domain NMR data for automated identification and quantification of metabolites in batches Song, Xu
2011
12 1 artikel
251 iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database Mora, Antonio
2011
12 1 artikel
252 iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex Razick, Sabry
2011
12 1 artikel
253 IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data Kim, Hyunsoo
2011
12 1 artikel
254 Jetset: selecting the optimal microarray probe set to represent a gene Li, Qiyuan
2011
12 1 artikel
255 Joint analysis of transcriptional and post- transcriptional brain tumor data: searching for emergent properties of cellular systems Fronza, Raffaele
2011
12 1 artikel
256 Kernel density weighted loess normalization improves the performance of detection within asymmetrical data Hsieh, Wen-Ping
2011
12 1 artikel
257 Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case Russ, Thomas A
2011
12 1 artikel
258 LabKey Server: An open source platform for scientific data integration, analysis and collaboration Nelson, Elizabeth K
2011
12 1 artikel
259 Lack of sufficiently strong informative features limits the potential of gene expression analysis as predictive tool for many clinical classification problems Hess, Kenneth R
2011
12 1 artikel
260 LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures Torres, Clinton
2011
12 1 artikel
261 Learning genetic epistasis using Bayesian network scoring criteria Jiang, Xia
2011
12 1 artikel
262 Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure Aydin, Zafer
2011
12 1 artikel
263 Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer Solvang, Hiroko K
2011
12 1 artikel
264 Link-based quantitative methods to identify differentially coexpressed genes and gene Pairs Yu, Hui
2011
12 1 artikel
265 LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates Moughon, Stewart E
2011
12 1 artikel
266 Logical Development of the Cell Ontology Meehan, Terrence F
2011
12 1 artikel
267 Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction Janssen, Stefan
2011
12 1 artikel
268 MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects Holt, Carson
2011
12 1 artikel
269 MAPI: towards the integrated exploitation of bioinformatics Web Services Ramirez, Sergio
2011
12 1 artikel
270 Mapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifs Basu, Sankar
2011
12 1 artikel
271 MAVENs: Motion analysis and visualization of elastic networks and structural ensembles Zimmermann, Michael T
2011
12 1 artikel
272 MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature Fang, Yu-Ching
2011
12 1 artikel
273 Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization Roskin, Krishna M
2011
12 1 artikel
274 Meta-analysis of gene expression microarrays with missing replicates Shi, Fan
2011
12 1 artikel
275 Meta-analytic approach to the accurate prediction of secreted virulence effectors in gram-negative bacteria Sato, Yoshiharu
2011
12 1 artikel
276 MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures Tulpan, Dan
2011
12 1 artikel
277 MetaboLab - advanced NMR data processing and analysis for metabolomics Ludwig, Christian
2011
12 1 artikel
278 Methodology and software to detect viral integration site hot-spots Presson, Angela P
2011
12 1 artikel
279 Microarray-based cancer prediction using single genes Wang, Xiaosheng
2011
12 1 artikel
280 MicroSyn: A user friendly tool for detection of microsynteny in a gene family Cai, Bin
2011
12 1 artikel
281 MI-GWAS: a SAS platform for the analysis of inherited and maternal genetic effects in genome-wide association studies using log-linear models Agopian, AJ
2011
12 1 artikel
282 MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries Chen, Wen Han
2011
12 1 artikel
283 MINE: Module Identification in Networks Rhrissorrakrai, Kahn
2011
12 1 artikel
284 Mining for genotype-phenotype relations in Saccharomyces using partial least squares Mehmood, Tahir
2011
12 1 artikel
285 miREE: miRNA recognition elements ensemble Reyes-Herrera, Paula H
2011
12 1 artikel
286 miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM Ding, Jiandong
2011
12 1 artikel
287 MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model Le Béchec, Antony
2011
12 1 artikel
288 MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences Wu, Yonggan
2011
12 1 artikel
289 miRTar: an integrated system for identifying miRNA-target interactions in human Hsu, Justin Bo-Kai
2011
12 1 artikel
290 Mitochondrial genome sequence analysis: A custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy Xie, Hongbo M
2011
12 1 artikel
291 MixtureTree: a program for constructing phylogeny Chen, Shu-Chuan
2011
12 1 artikel
292 MLPAstats: An R GUI package for the integrated analysis of copy number alterations using MLPA data Cáceres, Alejandro
2011
12 1 artikel
293 Modeling measurement error in tumor characterization studies Rakovski, Cyril
2011
12 1 artikel
294 MolabIS - An integrated information system for storing and managing molecular genetics data Truong, Cong VC
2011
12 1 artikel
295 More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs Truszkowski, Jakub
2011
12 1 artikel
296 Morphometic analysis of TCGA glioblastoma multiforme Chang, Hang
2011
12 1 artikel
297 MotifClick: prediction of cis-regulatory binding sites via merging cliques Zhang, Shaoqiang
2011
12 1 artikel
298 Motif-guided sparse decomposition of gene expression data for regulatory module identification Gong, Ting
2011
12 1 artikel
299 MotifMap: integrative genome-wide maps of regulatory motif sites for model species Daily, Kenneth
2011
12 1 artikel
300 MRCQuant- an accurate LC-MS relative isotopic quantification algorithm on TOF instruments Haskins, William E
2011
12 1 artikel
301 MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts Deng, Xin
2011
12 1 artikel
302 MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity Huang, Wen
2011
12 1 artikel
303 Mulcom: a multiple comparison statistical test for microarray data in Bioconductor Isella, Claudio
2011
12 1 artikel
304 Multiclass classification of microarray data samples with a reduced number of genes Tapia, Elizabeth
2011
12 1 artikel
305 Multilocus association mapping using generalized ridge logistic regression Liu, Zhe
2011
12 1 artikel
306 Multiple-input multiple-output causal strategies for gene selection Bontempi, Gianluca
2011
12 1 artikel
307 Multiple testing for gene sets from microarray experiments Sohn, Insuk
2011
12 1 artikel
308 Multi-target QSAR modelling in the analysis and design of HIV-HCV co-inhibitors: an in-silico study Liu, Qi
2011
12 1 artikel
309 Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars Sükösd, Zsuzsanna
2011
12 1 artikel
310 Multivariate analysis of microarray data: differential expression and differential connection Kiiveri, Harri T
2011
12 1 artikel
311 Mutagenesis Objective Search and Selection Tool (MOSST): an algorithm to predict structure-function related mutations in proteins Olivera-Nappa, Alvaro
2011
12 1 artikel
312 NanoStriDE: normalization and differential expression analysis of NanoString nCounter data Brumbaugh, Christopher D
2011
12 1 artikel
313 NCACO-score: An effective main-chain dependent scoring function for structure modeling Tian, Liqing
2011
12 1 artikel
314 NClassG+: A classifier for non-classically secreted Gram-positive bacterial proteins Restrepo-Montoya, Daniel
2011
12 1 artikel
315 NETGEM: Network Embedded Temporal GEnerative Model for gene expression data Jethava, Vinay
2011
12 1 artikel
316 Network-based group variable selection for detecting expression quantitative trait loci (eQTL) Wang, Weichen
2011
12 1 artikel
317 Network based transcription factor analysis of regenerating axolotl limbs Jhamb, Deepali
2011
12 1 artikel
318 NeurphologyJ: An automatic neuronal morphology quantification method and its application in pharmacological discovery Ho, Shinn-Ying
2011
12 1 artikel
319 New concepts for building vocabulary for cell image ontologies Plant, Anne L
2011
12 1 artikel
320 New methods to measure residues coevolution in proteins Gao, Hongyun
2011
12 1 artikel
321 New words in human mutagenesis Panchin, Alexander Y
2011
12 1 artikel
322 N-gram analysis of 970 microbial organisms reveals presence of biological language models Osmanbeyoglu, Hatice Ulku
2011
12 1 artikel
323 nocoRNAc: Characterization of non-coding RNAs in prokaryotes Herbig, Alexander
2011
12 1 artikel
324 NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins Scott, Michelle S
2011
12 1 artikel
325 Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme Kritikos, George D
2011
12 1 artikel
326 NORMA-Gene: A simple and robust method for qPCR normalization based on target gene data Heckmann, Lars-Henrik
2011
12 1 artikel
327 Normalization and centering of array-based heterologous genome hybridization based on divergent control probes Darby, Brian J
2011
12 1 artikel
328 Normalizing for individual cell population context in the analysis of high-content cellular screens Knapp, Bettina
2011
12 1 artikel
329 Novel computational analysis of protein binding array data identifies direct targets of Nkx2.2 in the pancreas Hill, Jonathon T
2011
12 1 artikel
330 NSMAP: A method for spliced isoforms identification and quantification from RNA-Seq Xia, Zheng
2011
12 1 artikel
331 Objective identification of residue ranges for the superposition of protein structures Kirchner, Donata K
2011
12 1 artikel
332 OmniMapFree: A unified tool to visualise and explore sequenced genomes Antoniw, John
2011
12 1 artikel
333 OntoCAT -- simple ontology search and integration in Java, R and REST/JavaScript Adamusiak, Tomasz
2011
12 1 artikel
334 openBIS: a flexible framework for managing and analyzing complex data in biology research Bauch, Angela
2011
12 1 artikel
335 Open-target sparse sensing of biological agents using DNA microarray Mohtashemi, Mojdeh
2011
12 1 artikel
336 OrthoInspector: comprehensive orthology analysis and visual exploration Linard, Benjamin
2011
12 1 artikel
337 Outer membrane proteins can be simply identified using secondary structure element alignment Yan, Ren-Xiang
2011
12 1 artikel
338 Parallelized short read assembly of large genomes using de Bruijn graphs Liu, Yongchao
2011
12 1 artikel
339 Partition decoupling for multi-gene analysis of gene expression profiling data Braun, Rosemary
2011
12 1 artikel
340 Pathway-based analysis using reduced gene subsets in genome-wide association studies Zhao, Jingyuan
2011
12 1 artikel
341 PChopper: high throughput peptide prediction for MRM/SRM transition design Afzal, Vackar
2011
12 1 artikel
342 pcrEfficiency: a Web tool for PCR amplification efficiency prediction Mallona, Izaskun
2011
12 1 artikel
343 PeakRanger: A cloud-enabled peak caller for ChIP-seq data Feng, Xin
2011
12 1 artikel
344 PeptX: Using Genetic Algorithms to optimize peptides for MHC binding Knapp, Bernhard
2011
12 1 artikel
345 Performance analysis of novel methods for detecting epistasis Shang, Junliang
2011
12 1 artikel
346 PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries Barbosa-Silva, Adriano
2011
12 1 artikel
347 Phamerator: a bioinformatic tool for comparative bacteriophage genomics Cresawn, Steven G
2011
12 1 artikel
348 PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data Chang, Wenling E
2011
12 1 artikel
349 phenosim - A software to simulate phenotypes for testing in genome-wide association studies Günther, Torsten
2011
12 1 artikel
350 Phenotype Recognition with Combined Features and Random Subspace Classifier Ensemble Zhang, Bailing
2011
12 1 artikel
351 Phylogenetically informed logic relationships improve detection of biological network organization Cui, Jike
2011
12 1 artikel
352 PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome Zhang, Jiajie
2011
12 1 artikel
353 PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment Sipos, Botond
2011
12 1 artikel
354 PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum Qiao, Yantao
2011
12 1 artikel
355 PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination Lücking, Robert
2011
12 1 artikel
356 PileLine: a toolbox to handle genome position information in next-generation sequencing studies Glez-Peña, Daniel
2011
12 1 artikel
357 PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity Lee, Tzong-Yi
2011
12 1 artikel
358 PMS5: an efficient exact algorithm for the (ℓ, d)-motif finding problem Dinh, Hieu
2011
12 1 artikel
359 POPISK: T-cell reactivity prediction using support vector machines and string kernels Tung, Chun-Wei
2011
12 1 artikel
360 PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality Dehouck, Yves
2011
12 1 artikel
361 Predicting disease-associated substitution of a single amino acid by analyzing residue interactions Li, Yizhou
2011
12 1 artikel
362 Predicting drug side-effect profiles: a chemical fragment-based approach Pauwels, Edouard
2011
12 1 artikel
363 Predicting functionally important SNP classes based on negative selection Levenstien, Mark A
2011
12 1 artikel
364 Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology Pillmann, Holger
2011
12 1 artikel
365 Predicting protein ligand binding motions with the conformation explorer Flores, Samuel C
2011
12 1 artikel
366 Predicting receptor-ligand pairs through kernel learning Iacucci, Ernesto
2011
12 1 artikel
367 Predicting RNA-Protein Interactions Using Only Sequence Information Muppirala, Usha K
2011
12 1 artikel
368 Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature Zhang, Wen
2011
12 1 artikel
369 Prediction of protein-binding areas by small-world residue networks and application to docking Pons, Carles
2011
12 1 artikel
370 Prediction using step-wise L1, L2 regularization and feature selection for small data sets with large number of features Demir-Kavuk, Ozgur
2011
12 1 artikel
371 PRIN: a predicted rice interactome network Gu, Haibin
2011
12 1 artikel
372 ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity Zhang, Shenghui
2011
12 1 artikel
373 pROC: an open-source package for R and S+ to analyze and compare ROC curves Robin, Xavier
2011
12 1 artikel
374 ProDiGe: Prioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples Mordelet, Fantine
2011
12 1 artikel
375 Properties of metabolic graphs: biological organization or representation artifacts? Zhou, Wanding
2011
12 1 artikel
376 ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process Basu, Malay K
2011
12 1 artikel
377 Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics Bergemann, Tracy L
2011
12 1 artikel
378 Protein alignment algorithms with an efficient backtracking routine on multiple GPUs Blazewicz, Jacek
2011
12 1 artikel
379 Proteinortho: Detection of (Co-)orthologs in large-scale analysis Lechner, Marcus
2011
12 1 artikel
380 Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics Chepelev, Leonid L
2011
12 1 artikel
381 Quantification of protein group coherence and pathway assignment using functional association Chitale, Meghana
2011
12 1 artikel
382 Quantitative characterization and analysis of the dynamic NF-κB response in microglia Sheppard, Patrick W
2011
12 1 artikel
383 Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data Gao, Shouguo
2011
12 1 artikel
384 Querying large read collections in main memory: a versatile data structure Philippe, Nicolas
2011
12 1 artikel
385 Qxpak.5: Old mixed model solutions for new genomics problems Pérez-Enciso, Miguel
2011
12 1 artikel
386 RAG: An update to the RNA-As-Graphs resource Izzo, Joseph A
2011
12 1 artikel
387 RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles Nalbantoglu, Ozkan U
2011
12 1 artikel
388 Randomization techniques for assessing the significance of gene periodicity results Kallio, Aleksi
2011
12 1 artikel
389 Random KNN feature selection - a fast and stable alternative to Random Forests Li, Shengqiao
2011
12 1 artikel
390 Ranking insertion, deletion and nonsense mutations based on their effect on genetic information Zia, Amin
2011
12 1 artikel
391 rapmad: Robust analysis of peptide microarray data Renard, Bernhard Y
2011
12 1 artikel
392 RAPSearch: a fast protein similarity search tool for short reads Ye, Yuzhen
2011
12 1 artikel
393 ReadDB Provides Efficient Storage for Mapped Short Reads Rolfe, P Alexander
2011
12 1 artikel
394 Rebooting the human mitochondrial phylogeny: an automated and scalable methodology with expert knowledge Blanco, Roberto
2011
12 1 artikel
395 Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities Fu, Yao
2011
12 1 artikel
396 ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets Frazee, Alyssa C
2011
12 1 artikel
397 RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis Zeeberg, Barry R
2011
12 1 artikel
398 RegNetB: Predicting Relevant Regulator-Gene Relationships in Localized Prostate Tumor Samples Alvarez, Angel
2011
12 1 artikel
399 Removing Noise From Pyrosequenced Amplicons Quince, Christopher
2011
12 1 artikel
400 Reporting FDR analogous confidence intervals for the log fold change of differentially expressed genes Jung, Klaus
2011
12 1 artikel
401 Revision history aware repositories of computational models of biological systems Miller, Andrew K
2011
12 1 artikel
402 Rigorous assessment and integration of the sequence and structure based features to predict hot spots Chen, Ruoying
2011
12 1 artikel
403 RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences Avihoo, Assaf
2011
12 1 artikel
404 rnaSeqMap: a Bioconductor package for RNA sequencing data exploration Leśniewska, Anna
2011
12 1 artikel
405 Robust joint analysis allowing for model uncertainty in two-stage genetic association studies Pan, Dongdong
2011
12 1 artikel
406 R2R - software to speed the depiction of aesthetic consensus RNA secondary structures Weinberg, Zasha
2011
12 1 artikel
407 RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome Li, Bo
2011
12 1 artikel
408 SAQC: SNP Array Quality Control Yang, Hsin-Chou
2011
12 1 artikel
409 SCFIA: a statistical corresponding feature identification algorithm for LC/MS Cui, Jian
2011
12 1 artikel
410 SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds Teyra, Joan
2011
12 1 artikel
411 Screening synteny blocks in pairwise genome comparisons through integer programming Tang, Haibao
2011
12 1 artikel
412 Segmentation and intensity estimation for microarray images with saturated pixels Yang, Yan
2011
12 1 artikel
413 SegMine workflows for semantic microarray data analysis in Orange4WS Podpečan, Vid
2011
12 1 artikel
414 Selection of organisms for the co-evolution-based study of protein interactions Herman, Dorota
2011
12 1 artikel
415 Selective Phenotyping, Entropy Reduction, and the Mastermind game Gagneur, Julien
2011
12 1 artikel
416 Semantic annotation of biological concepts interplaying microbial cellular responses Carreira, Rafael
2011
12 1 artikel
417 Semantic inference using chemogenomics data for drug discovery Zhu, Qian
2011
12 1 artikel
418 Semi-Automatic segmentation of multiple mouse embryos in MR images Baghdadi, Leila
2011
12 1 artikel
419 SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data Deng, Xutao
2011
12 1 artikel
420 Sequential interim analyses of survival data in DNA microarray experiments Leha, Andreas
2011
12 1 artikel
421 Shape-based peak identification for ChIP-Seq Hower, Valerie
2011
12 1 artikel
422 ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data Zagordi, Osvaldo
2011
12 1 artikel
423 SIGNATURE: A workbench for gene expression signature analysis Chang, Jeffrey T
2011
12 1 artikel
424 Significance testing in ridge regression for genetic data Cule, Erika
2011
12 1 artikel
425 Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns Gruel, Jérémy
2011
12 1 artikel
426 Simulated evolution applied to study the genetic code optimality using a model of codon reassignments Santos, José
2011
12 1 artikel
427 Smith-Waterman peak alignment for comprehensive two-dimensional gas chromatography-mass spectrometry Kim, Seongho
2011
12 1 artikel
428 SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects Dereeper, Alexis
2011
12 1 artikel
429 SNP-based pathway enrichment analysis for genome-wide association studies Weng, Lingjie
2011
12 1 artikel
430 SNPInterForest: A new method for detecting epistatic interactions Yoshida, Makiko
2011
12 1 artikel
431 SNPPicker: High quality tag SNP selection across multiple populations Sicotte, Hugues
2011
12 1 artikel
432 Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform Eckel-Passow, Jeanette E
2011
12 1 artikel
433 Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems Lê Cao, Kim-Anh
2011
12 1 artikel
434 S3QL: A distributed domain specific language for controlled semantic integration of life sciences data Deus , Helena F
2011
12 1 artikel
435 ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs Sanders, Marijn PA
2011
12 1 artikel
436 Statistical learning techniques applied to epidemiology: a simulated case-control comparison study with logistic regression Heine, John J
2011
12 1 artikel
437 Statistical methods for analyzing immunosignatures Brown, Justin R
2011
12 1 artikel
438 Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments Missirian, Victor
2011
12 1 artikel
439 Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies Martini, Paolo
2011
12 1 artikel
440 Stepwise classification of cancer samples using clinical and molecular data Obulkasim, Askar
2011
12 1 artikel
441 Stereochemical errors and their implications for molecular dynamics simulations Schreiner, Eduard
2011
12 1 artikel
442 Stochastic sequence-level model of coupled transcription and translation in prokaryotes Mäkelä, Jarno
2011
12 1 artikel
443 StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase Zemla, Adam T
2011
12 1 artikel
444 Strategies for aggregating gene expression data: The collapseRows R function Miller, Jeremy A
2011
12 1 artikel
445 Structator: fast index-based search for RNA sequence-structure patterns Meyer, Fernando
2011
12 1 artikel
446 Structural Measures for Network Biology Using QuACN Mueller, Laurin AJ
2011
12 1 artikel
447 STSE: Spatio-Temporal Simulation Environment Dedicated to Biology Stoma, Szymon
2011
12 1 artikel
448 Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts Plaza, Laura
2011
12 1 artikel
449 Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and structure Limpiti, Tulaya
2011
12 1 artikel
450 SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation Anderson, Catherine L
2011
12 1 artikel
451 Supervised Regularized Canonical Correlation Analysis: integrating histologic and proteomic measurements for predicting biochemical recurrence following prostate surgery Golugula, Abhishek
2011
12 1 artikel
452 Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays Eichner, Johannes
2011
12 1 artikel
453 Survival models with preclustered gene groups as covariates Kammers, Kai
2011
12 1 artikel
454 Swiftly Computing Center Strings Hufsky, Franziska
2011
12 1 artikel
455 Systematic error detection in experimental high-throughput screening Dragiev, Plamen
2011
12 1 artikel
456 TAFFEL: Independent Enrichment Analysis of gene sets Kurki, Mitja I
2011
12 1 artikel
457 Taxon ordering in phylogenetic trees: a workbench test Cerutti, Francesco
2011
12 1 artikel
458 Techniques for analysing pattern formation in populations of stem cells and their progeny Fozard, John A
2011
12 1 artikel
459 Thawing Frozen Robust Multi-array Analysis (fRMA) McCall, Matthew N
2011
12 1 artikel
460 The BioLexicon: a large-scale terminological resource for biomedical text mining Thompson, Paul
2011
12 1 artikel
461 The biomedical discourse relation bank Prasad, Rashmi
2011
12 1 artikel
462 The dChip survival analysis module for microarray data Amin, Samir B
2011
12 1 artikel
463 The impact of quantitative optimization of hybridization conditions on gene expression analysis Sykacek, Peter
2011
12 1 artikel
464 The PathOlogist: an automated tool for pathway-centric analysis Greenblum, Sharon I
2011
12 1 artikel
465 The projection score - an evaluation criterion for variable subset selection in PCA visualization Fontes, Magnus
2011
12 1 artikel
466 The Proteogenomic Mapping Tool Sanders, William S
2011
12 1 artikel
467 The representation of protein complexes in the Protein Ontology (PRO) Bult, Carol J
2011
12 1 artikel
468 The volatile compound BinBase mass spectral database Skogerson, Kirsten
2011
12 1 artikel
469 Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling Rousseau, Mathieu
2011
12 1 artikel
470 Tiling array data analysis: a multiscale approach using wavelets Karpikov, Alexander
2011
12 1 artikel
471 To aggregate or not to aggregate high-dimensional classifiers Xu, Cheng-Jian
2011
12 1 artikel
472 Toponomics method for the automated quantification of membrane protein translocation Domanova, Olga
2011
12 1 artikel
473 Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction Shi, Ping
2011
12 1 artikel
474 Toward an interactive article: integrating journals and biological databases Rangarajan, Arun
2011
12 1 artikel
475 Towards an Age-Phenome Knowledge-base Geifman, Nophar
2011
12 1 artikel
476 Tree edit distance for leaf-labelled trees on free leafset and its comparison with frequent subsplit dissimilarity and popular distance measures Koperwas, Jakub
2011
12 1 artikel
477 Tree pruner: An efficient tool for selecting data from a biased genetic database Krishnamoorthy, Mohan
2011
12 1 artikel
478 TreeRipper web application: towards a fully automated optical tree recognition software Hughes, Joseph
2011
12 1 artikel
479 TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences Harmanci, Arif O
2011
12 1 artikel
480 U-Compare bio-event meta-service: compatible BioNLP event extraction services Kano, Yoshinobu
2011
12 1 artikel
481 Ultra-fast sequence clustering from similarity networks with SiLiX Miele, Vincent
2011
12 1 artikel
482 Unintended consequences of existential quantifications in biomedical ontologies Boeker, Martin
2011
12 1 artikel
483 Unraveling gene regulatory networks from time-resolved gene expression data -- a measures comparison study Hempel, Sabrina
2011
12 1 artikel
484 Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis Borile, Claudio
2011
12 1 artikel
485 Using context to improve protein domain identification Ochoa, Alejandro
2011
12 1 artikel
486 Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets Chipman, Kyle C
2011
12 1 artikel
487 Validating clustering of molecular dynamics simulations using polymer models Phillips, Joshua L
2011
12 1 artikel
488 Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny Chang, Qin
2011
12 1 artikel
489 VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R Chen, Hanbo
2011
12 1 artikel
490 Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment Naznin, Farhana
2011
12 1 artikel
491 Visual gene developer: a fully programmable bioinformatics software for synthetic gene optimization Jung, Sang-Kyu
2011
12 1 artikel
492 Visualizing Meta-Features in Proteomic Maps Giannopoulou, Eugenia G
2011
12 1 artikel
493 Was the Scanner Calibration Slide used for its intended purpose? Zhang, Shannon
2011
12 1 artikel
494 Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays Hur, Youngmi
2011
12 1 artikel
495 Web-based metabolic network visualization with a zooming user interface Latendresse, Mario
2011
12 1 artikel
496 Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community Schindelman, Gary
2011
12 1 artikel
497 ZFN-Site searches genomes for zinc finger nuclease target sites and off-target sites Cradick, Thomas J
2011
12 1 artikel
                             497 gevonden resultaten
 
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