| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A Bayesian model for gene family evolution
|
Liu, Liang
|
|
2011
|
12 |
1 |
|
artikel
|
| 2 |
A Beta-mixture model for dimensionality reduction, sample classification and analysis
|
Laurila, Kirsti
|
|
2011
|
12 |
1 |
|
artikel
|
| 3 |
Accelerated large-scale multiple sequence alignment
|
Lloyd, Scott
|
|
2011
|
12 |
1 |
|
artikel
|
| 4 |
Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling
|
Wolfsheimer, Stefan
|
|
2011
|
12 |
1 |
|
artikel
|
| 5 |
A comparative study on gene-set analysis methods for assessing differential expression associated with the survival phenotype
|
Lee, Seungyeoun
|
|
2011
|
12 |
1 |
|
artikel
|
| 6 |
A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment
|
Guo, Yufan
|
|
2011
|
12 |
1 |
|
artikel
|
| 7 |
A comparison of the functional modules identified from time course and static PPI network data
|
Tang, Xiwei
|
|
2011
|
12 |
1 |
|
artikel
|
| 8 |
A Computational Framework for Proteome-Wide Pursuit and Prediction of Metalloproteins using ICP-MS and MS/MS Data
|
Lancaster, W Andrew
|
|
2011
|
12 |
1 |
|
artikel
|
| 9 |
Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface
|
Sroka, Jacek
|
|
2011
|
12 |
1 |
|
artikel
|
| 10 |
ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra
|
Hinkelmann, Franziska
|
|
2011
|
12 |
1 |
|
artikel
|
| 11 |
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models
|
Bernardes, Juliana S
|
|
2011
|
12 |
1 |
|
artikel
|
| 12 |
A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data
|
González, Juan R
|
|
2011
|
12 |
1 |
|
artikel
|
| 13 |
A flexible framework for sparse simultaneous component based data integration
|
Van Deun, Katrijn
|
|
2011
|
12 |
1 |
|
artikel
|
| 14 |
A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method
|
Luna, Augustin
|
|
2011
|
12 |
1 |
|
artikel
|
| 15 |
A fully automatic gridding method for cDNA microarray images
|
Rueda, Luis
|
|
2011
|
12 |
1 |
|
artikel
|
| 16 |
A genetic algorithm-Bayesian network approach for the analysis of metabolomics and spectroscopic data: application to the rapid identification of Bacillus spores and classification of Bacillus species
|
Correa, Elon
|
|
2011
|
12 |
1 |
|
artikel
|
| 17 |
A hidden two-locus disease association pattern in genome-wide association studies
|
Yang, Can
|
|
2011
|
12 |
1 |
|
artikel
|
| 18 |
A hierarchical Bayesian network approach for linkage disequilibrium modeling and data-dimensionality reduction prior to genome-wide association studies
|
Mourad, Raphaël
|
|
2011
|
12 |
1 |
|
artikel
|
| 19 |
AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations
|
Defoin-Platel, Michael
|
|
2011
|
12 |
1 |
|
artikel
|
| 20 |
Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data
|
Lopez, David
|
|
2011
|
12 |
1 |
|
artikel
|
| 21 |
Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees
|
Izquierdo-Carrasco, Fernando
|
|
2011
|
12 |
1 |
|
artikel
|
| 22 |
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
|
Cieślik, Marcin
|
|
2011
|
12 |
1 |
|
artikel
|
| 23 |
AlignHUSH: Alignment of HMMs using structure and hydrophobicity information
|
Krishnadev, Oruganty
|
|
2011
|
12 |
1 |
|
artikel
|
| 24 |
AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS
|
Takahashi, Hiroki
|
|
2011
|
12 |
1 |
|
artikel
|
| 25 |
A mixture model with a reference-based automatic selection of components for disease classification from protein and/or gene expression levels
|
Kopriva, Ivica
|
|
2011
|
12 |
1 |
|
artikel
|
| 26 |
A motif-independent metric for DNA sequence specificity
|
Pinello, Luca
|
|
2011
|
12 |
1 |
|
artikel
|
| 27 |
A multifaceted analysis of HIV-1 protease multidrug resistance phenotypes
|
Doherty, Kathleen M
|
|
2011
|
12 |
1 |
|
artikel
|
| 28 |
A mutation degree model for the identification of transcriptional regulatory elements
|
Zhang, Changqing
|
|
2011
|
12 |
1 |
|
artikel
|
| 29 |
An active learning based classification strategy for the minority class problem: application to histopathology annotation
|
Doyle, Scott
|
|
2011
|
12 |
1 |
|
artikel
|
| 30 |
An Agent-Based Model to study the epidemiological and evolutionary dynamics of Influenza viruses
|
Roche, Benjamin
|
|
2011
|
12 |
1 |
|
artikel
|
| 31 |
Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states
|
Yang, Jialiang
|
|
2011
|
12 |
1 |
|
artikel
|
| 32 |
Analyzing 2D gel images using a two-component empirical bayes model
|
Li, Feng
|
|
2011
|
12 |
1 |
|
artikel
|
| 33 |
An analysis of single amino acid repeats as use case for application specific background models
|
Łabaj, Paweł P
|
|
2011
|
12 |
1 |
|
artikel
|
| 34 |
An application of kernel methods to variety identification based on SSR markers genetic fingerprinting
|
Martin, Florian
|
|
2011
|
12 |
1 |
|
artikel
|
| 35 |
An automated homology-based approach for identifying transposable elements
|
Kennedy, Ryan C
|
|
2011
|
12 |
1 |
|
artikel
|
| 36 |
An empirical Bayes model using a competition score for metabolite identification in gas chromatography mass spectrometry
|
Jeong, Jaesik
|
|
2011
|
12 |
1 |
|
artikel
|
| 37 |
A Network of SCOP Hidden Markov Models and Its Analysis
|
Zhang, Liqing
|
|
2011
|
12 |
1 |
|
artikel
|
| 38 |
A new strategy for better genome assembly from very short reads
|
Ji, Yan
|
|
2011
|
12 |
1 |
|
artikel
|
| 39 |
An integrated ChIP-seq analysis platform with customizable workflows
|
Giannopoulou, Eugenia G
|
|
2011
|
12 |
1 |
|
artikel
|
| 40 |
An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data
|
Vu, Trung N
|
|
2011
|
12 |
1 |
|
artikel
|
| 41 |
An integrative approach to ortholog prediction for disease-focused and other functional studies
|
Hu, Yanhui
|
|
2011
|
12 |
1 |
|
artikel
|
| 42 |
An iterative approach of protein function prediction
|
Chi, Xiaoxiao
|
|
2011
|
12 |
1 |
|
artikel
|
| 43 |
A novel and well-defined benchmarking method for second generation read mapping
|
Holtgrewe, Manuel
|
|
2011
|
12 |
1 |
|
artikel
|
| 44 |
A novel approach to the clustering of microarray data via nonparametric density estimation
|
De Bin, Riccardo
|
|
2011
|
12 |
1 |
|
artikel
|
| 45 |
A novel method to compare protein structures using local descriptors
|
Daniluk, Paweł
|
|
2011
|
12 |
1 |
|
artikel
|
| 46 |
A novel method to identify cooperative functional modules: study of module coordination in the Saccharomyces cerevisiae cell cycle
|
Hsu, Jeh-Ting
|
|
2011
|
12 |
1 |
|
artikel
|
| 47 |
A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships
|
Lemaitre, Claire
|
|
2011
|
12 |
1 |
|
artikel
|
| 48 |
"Antelope": a hybrid-logic model checker for branching-time Boolean GRN analysis
|
Arellano, Gustavo
|
|
2011
|
12 |
1 |
|
artikel
|
| 49 |
AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm
|
Kim, Jihoon
|
|
2011
|
12 |
1 |
|
artikel
|
| 50 |
A parallel method for enumerating amino acid compositions and masses of all theoretical peptides
|
Nefedov, Alexey V
|
|
2011
|
12 |
1 |
|
artikel
|
| 51 |
A Platform for Processing Expression of Short Time Series (PESTS)
|
Sinha, Anshu
|
|
2011
|
12 |
1 |
|
artikel
|
| 52 |
Appearance frequency modulated gene set enrichment testing
|
Ma, Jun
|
|
2011
|
12 |
1 |
|
artikel
|
| 53 |
Application of an efficient Bayesian discretization method to biomedical data
|
Lustgarten, Jonathan L
|
|
2011
|
12 |
1 |
|
artikel
|
| 54 |
Applications of the pipeline environment for visual informatics and genomics computations
|
Dinov, Ivo D
|
|
2011
|
12 |
1 |
|
artikel
|
| 55 |
A quality metric for homology modeling: the H-factor
|
di Luccio, Eric
|
|
2011
|
12 |
1 |
|
artikel
|
| 56 |
A regression system for estimation of errors introduced by confocal imaging into gene expression data in situ
|
Myasnikova, Ekaterina
|
|
2011
|
12 |
1 |
|
artikel
|
| 57 |
ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs
|
Overall, Christopher C
|
|
2011
|
12 |
1 |
|
artikel
|
| 58 |
A scan statistic to extract causal gene clusters from case-control genome-wide rare CNV data
|
Nishiyama, Takeshi
|
|
2011
|
12 |
1 |
|
artikel
|
| 59 |
A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression
|
Kalaitzis, Alfredo A
|
|
2011
|
12 |
1 |
|
artikel
|
| 60 |
ASPDock: protein-protein docking algorithm using atomic solvation parameters model
|
Li, Lin
|
|
2011
|
12 |
1 |
|
artikel
|
| 61 |
Assessing affymetrix GeneChip microarray quality
|
McCall, Matthew N
|
|
2011
|
12 |
1 |
|
artikel
|
| 62 |
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
|
Wetzel, Joshua
|
|
2011
|
12 |
1 |
|
artikel
|
| 63 |
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
|
Lysenko, Artem
|
|
2011
|
12 |
1 |
|
artikel
|
| 64 |
A systems approach to identifying correlated gene targets for the loss of colour pigmentation in plants
|
Clark, Sangaalofa T
|
|
2011
|
12 |
1 |
|
artikel
|
| 65 |
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry
|
Brusniak, Mi-Youn K
|
|
2011
|
12 |
1 |
|
artikel
|
| 66 |
A theoretical entropy score as a single value to express inhibitor selectivity
|
Uitdehaag, Joost CM
|
|
2011
|
12 |
1 |
|
artikel
|
| 67 |
A unified framework for managing provenance information in translational research
|
Sahoo, Satya S
|
|
2011
|
12 |
1 |
|
artikel
|
| 68 |
A user-friendly web portal for T-Coffee on supercomputers
|
Rius, Josep
|
|
2011
|
12 |
1 |
|
artikel
|
| 69 |
Automated NMR relaxation dispersion data analysis using NESSY
|
Bieri, Michael
|
|
2011
|
12 |
1 |
|
artikel
|
| 70 |
Bacterial syntenies: an exact approach with gene quorum
|
Deniélou, Yves-Pol
|
|
2011
|
12 |
1 |
|
artikel
|
| 71 |
Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements
|
Cooke, Emma J
|
|
2011
|
12 |
1 |
|
artikel
|
| 72 |
Bayesian semi-supervised classification of bacterial samples using MLST databases
|
Cheng, Lu
|
|
2011
|
12 |
1 |
|
artikel
|
| 73 |
Bias detection and correction in RNA-Sequencing data
|
Zheng, Wei
|
|
2011
|
12 |
1 |
|
artikel
|
| 74 |
Biblio-MetReS: A bibliometric network reconstruction application and server
|
Usié, Anabel
|
|
2011
|
12 |
1 |
|
artikel
|
| 75 |
BICEPP: an example-based statistical text mining method for predicting the binary characteristics of drugs
|
Lin, Frank PY
|
|
2011
|
12 |
1 |
|
artikel
|
| 76 |
Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences
|
Amos-Binks, Adam
|
|
2011
|
12 |
1 |
|
artikel
|
| 77 |
BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results
|
Visser, Ubbo
|
|
2011
|
12 |
1 |
|
artikel
|
| 78 |
Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping
|
Gallone, Giuseppe
|
|
2011
|
12 |
1 |
|
artikel
|
| 79 |
BioIMAX: A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data
|
Loyek, Christian
|
|
2011
|
12 |
1 |
|
artikel
|
| 80 |
Bioinformatics analysis of disordered proteins in prokaryotes
|
Pavlović-Lažetić, Gordana M
|
|
2011
|
12 |
1 |
|
artikel
|
| 81 |
Biomarker Discovery and Redundancy Reduction towards Classification using a Multi-factorial MALDI-TOF MS T2DM Mouse Model Dataset
|
Bauer, Chris
|
|
2011
|
12 |
1 |
|
artikel
|
| 82 |
BioN∅T: A searchable database of biomedical negated sentences
|
Agarwal, Shashank
|
|
2011
|
12 |
1 |
|
artikel
|
| 83 |
BIO::Phylo-phyloinformatic analysis using perl
|
Vos, Rutger A
|
|
2011
|
12 |
1 |
|
artikel
|
| 84 |
BLProt: prediction of bioluminescent proteins based on support vector machine and relieff feature selection
|
Kandaswamy, Krishna Kumar
|
|
2011
|
12 |
1 |
|
artikel
|
| 85 |
Brunn: An open source laboratory information system for microplates with a graphical plate layout design process
|
Alvarsson, Jonathan
|
|
2011
|
12 |
1 |
|
artikel
|
| 86 |
caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts
|
Moffitt, Richard A
|
|
2011
|
12 |
1 |
|
artikel
|
| 87 |
Cancer computational biology
|
Yakhini, Zohar
|
|
2011
|
12 |
1 |
|
artikel
|
| 88 |
CAPL: an efficient association software package using family and case-control data and accounting for population stratification
|
Chung, Ren-Hua
|
|
2011
|
12 |
1 |
|
artikel
|
| 89 |
CASCADE_SCAN: mining signal transduction network from high-throughput data based on steepest descent method
|
Wang, Kai
|
|
2011
|
12 |
1 |
|
artikel
|
| 90 |
CDAO-Store: Ontology-driven Data Integration for Phylogenetic Analysis
|
Chisham, Brandon
|
|
2011
|
12 |
1 |
|
artikel
|
| 91 |
Cell subset prediction for blood genomic studies
|
Bolen, Christopher R
|
|
2011
|
12 |
1 |
|
artikel
|
| 92 |
Characterization of a Bayesian genetic clustering algorithm based on a Dirichlet process prior and comparison among Bayesian clustering methods
|
Onogi, Akio
|
|
2011
|
12 |
1 |
|
artikel
|
| 93 |
Characterizing genetic interactions in human disease association studies using statistical epistasis networks
|
Hu, Ting
|
|
2011
|
12 |
1 |
|
artikel
|
| 94 |
ChIPseqR: analysis of ChIP-seq experiments
|
Humburg, Peter
|
|
2011
|
12 |
1 |
|
artikel
|
| 95 |
Classification of microarrays; synergistic effects between normalization, gene selection and machine learning
|
Önskog, Jenny
|
|
2011
|
12 |
1 |
|
artikel
|
| 96 |
Classification of viral zoonosis through receptor pattern analysis
|
Bae, Se-Eun
|
|
2011
|
12 |
1 |
|
artikel
|
| 97 |
Classifying short genomic fragments from novel lineages using composition and homology
|
Parks, Donovan H
|
|
2011
|
12 |
1 |
|
artikel
|
| 98 |
CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
|
Kumar, Surendra
|
|
2011
|
12 |
1 |
|
artikel
|
| 99 |
CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing
|
Angiuoli, Samuel V
|
|
2011
|
12 |
1 |
|
artikel
|
| 100 |
Clustering gene expression data with a penalized graph-based metric
|
Bayá, Ariel E
|
|
2011
|
12 |
1 |
|
artikel
|
| 101 |
Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis
|
Frühwirth, Rudolf
|
|
2011
|
12 |
1 |
|
artikel
|
| 102 |
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
|
Morris, John H
|
|
2011
|
12 |
1 |
|
artikel
|
| 103 |
CNV-WebStore: Online CNV Analysis, Storage and Interpretation
|
Vandeweyer, Geert
|
|
2011
|
12 |
1 |
|
artikel
|
| 104 |
CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes
|
Gauthier, Franck
|
|
2011
|
12 |
1 |
|
artikel
|
| 105 |
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing
|
Prosperi, Mattia CF
|
|
2011
|
12 |
1 |
|
artikel
|
| 106 |
Combining gene prediction methods to improve metagenomic gene annotation
|
Yok, Non G
|
|
2011
|
12 |
1 |
|
artikel
|
| 107 |
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
|
Ritchie, Matthew E
|
|
2011
|
12 |
1 |
|
artikel
|
| 108 |
Comparison of lists of genes based on functional profiles
|
Salicrú, Miquel
|
|
2011
|
12 |
1 |
|
artikel
|
| 109 |
Comparison of methods for calculating conditional expectations of sufficient statistics for continuous time Markov chains
|
Tataru, Paula
|
|
2011
|
12 |
1 |
|
artikel
|
| 110 |
compomics-utilities: an open-source Java library for computational proteomics
|
Barsnes, Harald
|
|
2011
|
12 |
1 |
|
artikel
|
| 111 |
Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO database
|
Bickerton, George R
|
|
2011
|
12 |
1 |
|
artikel
|
| 112 |
Computable visually observed phenotype ontological framework for plants
|
Harnsomburana, Jaturon
|
|
2011
|
12 |
1 |
|
artikel
|
| 113 |
Computational study of noise in a large signal transduction network
|
Intosalmi, Jukka
|
|
2011
|
12 |
1 |
|
artikel
|
| 114 |
Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps
|
Fraccalvieri, Domenico
|
|
2011
|
12 |
1 |
|
artikel
|
| 115 |
Conotoxin protein classification using free scores of words and support vector machines
|
Zaki, Nazar
|
|
2011
|
12 |
1 |
|
artikel
|
| 116 |
Consistent Differential Expression Pattern (CDEP) on microarray to identify genes related to metastatic behavior
|
Tsoi, Lam C
|
|
2011
|
12 |
1 |
|
artikel
|
| 117 |
Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response
|
Li, Qiyuan
|
|
2011
|
12 |
1 |
|
artikel
|
| 118 |
Construct and Compare Gene Coexpression Networks with DAPfinder and DAPview
|
Skinner, Jeff
|
|
2011
|
12 |
1 |
|
artikel
|
| 119 |
Constructing a semantic predication gold standard from the biomedical literature
|
Kilicoglu, Halil
|
|
2011
|
12 |
1 |
|
artikel
|
| 120 |
Constructing gene regulatory networks for long term photosynthetic light acclimation in Arabidopsis thaliana
|
Yao, Cheng-Wei
|
|
2011
|
12 |
1 |
|
artikel
|
| 121 |
Context-dependent transcriptional regulations between signal transduction pathways
|
Hwang, Sohyun
|
|
2011
|
12 |
1 |
|
artikel
|
| 122 |
Correlated mutations via regularized multinomial regression
|
Sreekumar, Janardanan
|
|
2011
|
12 |
1 |
|
artikel
|
| 123 |
Cost sensitive hierarchical document classification to triage PubMed abstracts for manual curation
|
Seymour, Emily
|
|
2011
|
12 |
1 |
|
artikel
|
| 124 |
Cross-validated stepwise regression for identification of novel non-nucleoside reverse transcriptase inhibitor resistance associated mutations
|
Van der Borght, Koen
|
|
2011
|
12 |
1 |
|
artikel
|
| 125 |
CSI-OMIM - Clinical Synopsis Search in OMIM
|
Cohen, Raphael
|
|
2011
|
12 |
1 |
|
artikel
|
| 126 |
DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking
|
Tuszynska, Irina
|
|
2011
|
12 |
1 |
|
artikel
|
| 127 |
DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference
|
Jiao, Yan
|
|
2011
|
12 |
1 |
|
artikel
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| 128 |
DAS Writeback: A Collaborative Annotation System
|
Salazar, Gustavo A
|
|
2011
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12 |
1 |
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artikel
|
| 129 |
dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation
|
Wang, Jinlian
|
|
2011
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12 |
1 |
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artikel
|
| 130 |
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
|
Liu, Yongchao
|
|
2011
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12 |
1 |
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artikel
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| 131 |
DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking
|
Liu, Shiyong
|
|
2011
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12 |
1 |
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artikel
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| 132 |
Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data
|
Szczurek, Ewa
|
|
2011
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12 |
1 |
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artikel
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| 133 |
Detection of Fused Genes in Eukaryotic Genomes using Gene deFuser: Analysis of the Tetrahymena thermophila genome
|
Salim, Hannah MW
|
|
2011
|
12 |
1 |
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artikel
|
| 134 |
Detection of lineage-specific evolutionary changes among primate species
|
Pertea, Mihaela
|
|
2011
|
12 |
1 |
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artikel
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| 135 |
Detection of recurrent rearrangement breakpoints from copy number data
|
Ritz , Anna
|
|
2011
|
12 |
1 |
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artikel
|
| 136 |
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown
|
Unterthiner, Thomas
|
|
2011
|
12 |
1 |
|
artikel
|
| 137 |
Determinants of antigenicity and specificity in immune response for protein sequences
|
Wang, Yulong
|
|
2011
|
12 |
1 |
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artikel
|
| 138 |
Deterministic and stochastic population-level simulations of an artificial lac operon genetic network
|
Stamatakis, Michail
|
|
2011
|
12 |
1 |
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artikel
|
| 139 |
Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series
|
Yuan, Yuan
|
|
2011
|
12 |
1 |
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artikel
|
| 140 |
Development of a classification scheme for disease-related enzyme information
|
Söhngen, Carola
|
|
2011
|
12 |
1 |
|
artikel
|
| 141 |
Differential C3NET reveals disease networks of direct physical interactions
|
Altay, Gökmen
|
|
2011
|
12 |
1 |
|
artikel
|
| 142 |
Dimension reduction with gene expression data using targeted variable importance measurement
|
Wang, Hui
|
|
2011
|
12 |
1 |
|
artikel
|
| 143 |
Discovering biological connections between experimental conditions based on common patterns of differential gene expression
|
Gower, Adam C
|
|
2011
|
12 |
1 |
|
artikel
|
| 144 |
Discovering time-lagged rules from microarray data using gene profile classifiers
|
Gallo, Cristian A
|
|
2011
|
12 |
1 |
|
artikel
|
| 145 |
Discrimination of approved drugs from experimental drugs by learning methods
|
Tang, Kailin
|
|
2011
|
12 |
1 |
|
artikel
|
| 146 |
Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs
|
Regad, Leslie
|
|
2011
|
12 |
1 |
|
artikel
|
| 147 |
DNACLUST: accurate and efficient clustering of phylogenetic marker genes
|
Ghodsi, Mohammadreza
|
|
2011
|
12 |
1 |
|
artikel
|
| 148 |
DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning
|
Eickholt, Jesse
|
|
2011
|
12 |
1 |
|
artikel
|
| 149 |
Domain architecture conservation in orthologs
|
Forslund, Kristoffer
|
|
2011
|
12 |
1 |
|
artikel
|
| 150 |
DOSim: An R package for similarity between diseases based on Disease Ontology
|
Li, Jiang
|
|
2011
|
12 |
1 |
|
artikel
|
| 151 |
Dr. PIAS: an integrative system for assessing the druggability of protein-protein interactions
|
Sugaya, Nobuyoshi
|
|
2011
|
12 |
1 |
|
artikel
|
| 152 |
Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images
|
Singan, Vasanth R
|
|
2011
|
12 |
1 |
|
artikel
|
| 153 |
Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles
|
Tsai, Richard Tzong-Han
|
|
2011
|
12 |
1 |
|
artikel
|
| 154 |
easyDAS: Automatic creation of DAS servers
|
Gel Moreno, Bernat
|
|
2011
|
12 |
1 |
|
artikel
|
| 155 |
Efficient alignment of pyrosequencing reads for re-sequencing applications
|
Fernandes, Francisco
|
|
2011
|
12 |
1 |
|
artikel
|
| 156 |
Efficient counting of k-mers in DNA sequences using a bloom filter
|
Melsted, Páll
|
|
2011
|
12 |
1 |
|
artikel
|
| 157 |
Efficient α, β-motif finder for identification of phenotype-related functional modules
|
Schmidt, Matthew C
|
|
2011
|
12 |
1 |
|
artikel
|
| 158 |
Elastic SCAD as a novel penalization method for SVM classification tasks in high-dimensional data
|
Becker, Natalia
|
|
2011
|
12 |
1 |
|
artikel
|
| 159 |
Empirical Bayesian models for analysing molecular serotyping microarrays
|
Newton, Richard
|
|
2011
|
12 |
1 |
|
artikel
|
| 160 |
Empirical comparison of cross-platform normalization methods for gene expression data
|
Rudy, Jason
|
|
2011
|
12 |
1 |
|
artikel
|
| 161 |
ENGINES: exploring single nucleotide variation in entire human genomes
|
Amigo, Jorge
|
|
2011
|
12 |
1 |
|
artikel
|
| 162 |
Enhanced peptide quantification using spectral count clustering and cluster abundance
|
Lee, Seungmook
|
|
2011
|
12 |
1 |
|
artikel
|
| 163 |
Enhancements to the ADMIXTURE algorithm for individual ancestry estimation
|
Alexander, David H
|
|
2011
|
12 |
1 |
|
artikel
|
| 164 |
Enriching a biomedical event corpus with meta-knowledge annotation
|
Thompson, Paul
|
|
2011
|
12 |
1 |
|
artikel
|
| 165 |
Enriching for correct prediction of biological processes using a combination of diverse classifiers
|
Ko, Daijin
|
|
2011
|
12 |
1 |
|
artikel
|
| 166 |
EnzymeDetector: an integrated enzyme function prediction tool and database
|
Quester, Susanne
|
|
2011
|
12 |
1 |
|
artikel
|
| 167 |
EPEPT: A web service for enhanced P-value estimation in permutation tests
|
Knijnenburg, Theo A
|
|
2011
|
12 |
1 |
|
artikel
|
| 168 |
Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms
|
Milnthorpe, Andrew T
|
|
2011
|
12 |
1 |
|
artikel
|
| 169 |
Estimating developmental states of tumors and normal tissues using a linear time-ordered model
|
Zhang, Bo
|
|
2011
|
12 |
1 |
|
artikel
|
| 170 |
Estimation of allele frequency and association mapping using next-generation sequencing data
|
Kim, Su Yeon
|
|
2011
|
12 |
1 |
|
artikel
|
| 171 |
Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows
|
Barriuso, Jorge
|
|
2011
|
12 |
1 |
|
artikel
|
| 172 |
Evaluating methods for ranking differentially expressed genes applied to microArray quality control data
|
Kadota, Koji
|
|
2011
|
12 |
1 |
|
artikel
|
| 173 |
Exact score distribution computation for ontological similarity searches
|
Schulz, Marcel H
|
|
2011
|
12 |
1 |
|
artikel
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| 174 |
eXframe: reusable framework for storage, analysis and visualization of genomics experiments
|
Sinha, Amit U
|
|
2011
|
12 |
1 |
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artikel
|
| 175 |
Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation
|
Jimeno-Yepes, Antonio J
|
|
2011
|
12 |
1 |
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artikel
|
| 176 |
Exploratory analysis of genomic segmentations with Segtools
|
Buske, Orion J
|
|
2011
|
12 |
1 |
|
artikel
|
| 177 |
Exploring subdomain variation in biomedical language
|
Lippincott, Thomas
|
|
2011
|
12 |
1 |
|
artikel
|
| 178 |
Expression cartography of human tissues using self organizing maps
|
Wirth, Henry
|
|
2011
|
12 |
1 |
|
artikel
|
| 179 |
Extension of the bayesian alphabet for genomic selection
|
Habier, David
|
|
2011
|
12 |
1 |
|
artikel
|
| 180 |
Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi
|
Axelsson, Elin
|
|
2011
|
12 |
1 |
|
artikel
|
| 181 |
Extracting scientific articles from a large digital archive: BioStor and the Biodiversity Heritage Library
|
Page, Roderic DM
|
|
2011
|
12 |
1 |
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artikel
|
| 182 |
Extraction of consensus protein patterns in regions containing non-proline cis peptide bonds and their functional assessment
|
Exarchos, Konstantinos P
|
|
2011
|
12 |
1 |
|
artikel
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| 183 |
FAAST: Flow-space Assisted Alignment Search Tool
|
Lysholm, Fredrik
|
|
2011
|
12 |
1 |
|
artikel
|
| 184 |
FASIMU: flexible software for flux-balance computation series in large metabolic networks
|
Hoppe, Andreas
|
|
2011
|
12 |
1 |
|
artikel
|
| 185 |
Fast empirical Bayesian LASSO for multiple quantitative trait locus mapping
|
Cai, Xiaodong
|
|
2011
|
12 |
1 |
|
artikel
|
| 186 |
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
|
Rognes, Torbjørn
|
|
2011
|
12 |
1 |
|
artikel
|
| 187 |
Fast MCMC sampling for hidden markov models to determine copy number variations
|
Mahmud, Md Pavel
|
|
2011
|
12 |
1 |
|
artikel
|
| 188 |
Fast network centrality analysis using GPUs
|
Shi, Zhiao
|
|
2011
|
12 |
1 |
|
artikel
|
| 189 |
FFCA: a feasibility-based method for flux coupling analysis of metabolic networks
|
David, Laszlo
|
|
2011
|
12 |
1 |
|
artikel
|
| 190 |
FIND: A new software tool and development platform for enhanced multicolor flow analysis
|
Dabdoub, Shareef M
|
|
2011
|
12 |
1 |
|
artikel
|
| 191 |
Flexible taxonomic assignment of ambiguous sequencing reads
|
Clemente, José C
|
|
2011
|
12 |
1 |
|
artikel
|
| 192 |
From hybridization theory to microarray data analysis: performance evaluation
|
Berger, Fabrice
|
|
2011
|
12 |
1 |
|
artikel
|
| 193 |
FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins
|
Roche, Daniel B
|
|
2011
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12 |
1 |
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artikel
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| 194 |
Fusion of metabolomics and proteomics data for biomarkers discovery: case study on the experimental autoimmune encephalomyelitis
|
Blanchet, Lionel
|
|
2011
|
12 |
1 |
|
artikel
|
| 195 |
GC-Content Normalization for RNA-Seq Data
|
Risso, Davide
|
|
2011
|
12 |
1 |
|
artikel
|
| 196 |
GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA)
|
Tsugawa, Hiroshi
|
|
2011
|
12 |
1 |
|
artikel
|
| 197 |
GCOD - GeneChip Oncology Database
|
Liu, Fenglong
|
|
2011
|
12 |
1 |
|
artikel
|
| 198 |
Gebiss: an ImageJ plugin for the specification of ground truth and the performance evaluation of 3d segmentation algorithms
|
Kriston-Vizi, Janos
|
|
2011
|
12 |
1 |
|
artikel
|
| 199 |
Gene ontology based transfer learning for protein subcellular localization
|
Mei, Suyu
|
|
2011
|
12 |
1 |
|
artikel
|
| 200 |
Generalized shrinkage F-like statistics for testing an interaction term in gene expression analysis in the presence of heteroscedasticity
|
Yang, Jie
|
|
2011
|
12 |
1 |
|
artikel
|
| 201 |
Gene set analysis for longitudinal gene expression data
|
Zhang, Ke
|
|
2011
|
12 |
1 |
|
artikel
|
| 202 |
Genome-wide algorithm for detecting CNV associations with diseases
|
Xu, Yaji
|
|
2011
|
12 |
1 |
|
artikel
|
| 203 |
Genotype calling in tetraploid species from bi-allelic marker data using mixture models
|
Voorrips, Roeland E
|
|
2011
|
12 |
1 |
|
artikel
|
| 204 |
Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis
|
Dottorini, Tania
|
|
2011
|
12 |
1 |
|
artikel
|
| 205 |
GO-based Functional Dissimilarity of Gene Sets
|
Díaz-Díaz, Norberto
|
|
2011
|
12 |
1 |
|
artikel
|
| 206 |
GOmotif: A web server for investigating the biological role of protein sequence motifs
|
Bristow, Franklin
|
|
2011
|
12 |
1 |
|
artikel
|
| 207 |
GPCR-SSFE: A comprehensive database of G-protein-coupled receptor template predictions and homology models
|
Worth, Catherine L
|
|
2011
|
12 |
1 |
|
artikel
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| 208 |
GPS-Prot: A web-based visualization platform for integrating host-pathogen interaction data
|
Fahey, Marie E
|
|
2011
|
12 |
1 |
|
artikel
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| 209 |
Graph based fusion of miRNA and mRNA expression data improves clinical outcome prediction in prostate cancer
|
Gade, Stephan
|
|
2011
|
12 |
1 |
|
artikel
|
| 210 |
GraphCrunch 2: Software tool for network modeling, alignment and clustering
|
Kuchaiev, Oleksii
|
|
2011
|
12 |
1 |
|
artikel
|
| 211 |
GSV: a web-based genome synteny viewer for customized data
|
Revanna, Kashi V
|
|
2011
|
12 |
1 |
|
artikel
|
| 212 |
Haplo2Ped: a tool using haplotypes as markers for linkage analysis
|
Cheng, Feng
|
|
2011
|
12 |
1 |
|
artikel
|
| 213 |
HemeBIND: a novel method for heme binding residue prediction by combining structural and sequence information
|
Liu, Rong
|
|
2011
|
12 |
1 |
|
artikel
|
| 214 |
Hierarchical graphs for rule-based modeling of biochemical systems
|
Lemons, Nathan W
|
|
2011
|
12 |
1 |
|
artikel
|
| 215 |
Hierarchical Parallelization of Gene Differential Association Analysis
|
Needham, Mark
|
|
2011
|
12 |
1 |
|
artikel
|
| 216 |
Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes
|
Zhang, Zhihua
|
|
2011
|
12 |
1 |
|
artikel
|
| 217 |
HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors
|
Zhang, Yuan
|
|
2011
|
12 |
1 |
|
artikel
|
| 218 |
HomPPI: a class of sequence homology based protein-protein interface prediction methods
|
Xue, Li C
|
|
2011
|
12 |
1 |
|
artikel
|
| 219 |
How the gene ontology evolves
|
Leonelli, Sabina
|
|
2011
|
12 |
1 |
|
artikel
|
| 220 |
HTPheno: An image analysis pipeline for high-throughput plant phenotyping
|
Hartmann, Anja
|
|
2011
|
12 |
1 |
|
artikel
|
| 221 |
Hydrophobic pulses predict transmembrane helix irregularities and channel transmembrane units
|
Paulet, Damien
|
|
2011
|
12 |
1 |
|
artikel
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| 222 |
iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences
|
Zheng, Yi
|
|
2011
|
12 |
1 |
|
artikel
|
| 223 |
iCTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks
|
Wang, Lili
|
|
2011
|
12 |
1 |
|
artikel
|
| 224 |
Identification and correction of systematic error in high-throughput sequence data
|
Meacham, Frazer
|
|
2011
|
12 |
1 |
|
artikel
|
| 225 |
Identification of exonic regions in DNA sequences using cross-correlation and noise suppression by discrete wavelet transform
|
Abbasi, Omid
|
|
2011
|
12 |
1 |
|
artikel
|
| 226 |
Identification of microRNA precursors based on random forest with network-level representation method of stem-loop structure
|
Xiao, Jiamin
|
|
2011
|
12 |
1 |
|
artikel
|
| 227 |
Identification of models of heterogeneous cell populations from population snapshot data
|
Hasenauer, Jan
|
|
2011
|
12 |
1 |
|
artikel
|
| 228 |
Identifier mapping performance for integrating transcriptomics and proteomics experimental results
|
Day, Roger S
|
|
2011
|
12 |
1 |
|
artikel
|
| 229 |
Identifying elemental genomic track types and representing them uniformly
|
Gundersen, Sveinung
|
|
2011
|
12 |
1 |
|
artikel
|
| 230 |
Identifying hypermethylated CpG islands using a quantile regression model
|
Sun, Shuying
|
|
2011
|
12 |
1 |
|
artikel
|
| 231 |
Impact of the spotted microarray preprocessing method on fold-change compression and variance stability
|
Ambroise, Jérôme
|
|
2011
|
12 |
1 |
|
artikel
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| 232 |
Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection
|
Toofanny, Rudesh D
|
|
2011
|
12 |
1 |
|
artikel
|
| 233 |
Implementation of force distribution analysis for molecular dynamics simulations
|
Stacklies, Wolfram
|
|
2011
|
12 |
1 |
|
artikel
|
| 234 |
Implementing a genomic data management system using iRODS in the Wellcome Trust Sanger Institute
|
Chiang, Gen-Tao
|
|
2011
|
12 |
1 |
|
artikel
|
| 235 |
Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation
|
Ren, Xianwen
|
|
2011
|
12 |
1 |
|
artikel
|
| 236 |
Improving ontologies by automatic reasoning and evaluation of logical definitions
|
Köhler, Sebastian
|
|
2011
|
12 |
1 |
|
artikel
|
| 237 |
Improving pan-genome annotation using whole genome multiple alignment
|
Angiuoli, Samuel V
|
|
2011
|
12 |
1 |
|
artikel
|
| 238 |
Improving probe set selection for microbial community analysis by leveraging taxonomic information of training sequences
|
Ruegger, Paul M
|
|
2011
|
12 |
1 |
|
artikel
|
| 239 |
Improving the performance of β-turn prediction using predicted shape strings and a two-layer support vector machine model
|
Tang, Zehui
|
|
2011
|
12 |
1 |
|
artikel
|
| 240 |
Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams
|
Segura, Joan
|
|
2011
|
12 |
1 |
|
artikel
|
| 241 |
Inference of chromosome-specific copy numbers using population haplotypes
|
Huang, Yao-Ting
|
|
2011
|
12 |
1 |
|
artikel
|
| 242 |
Inferring functional modules of protein families with probabilistic topic models
|
Konietzny, Sebastian GA
|
|
2011
|
12 |
1 |
|
artikel
|
| 243 |
Inferring signalling networks from longitudinal data using sampling based approaches in the R-package 'ddepn'
|
Bender, Christian
|
|
2011
|
12 |
1 |
|
artikel
|
| 244 |
In-silico prediction of disorder content using hybrid sequence representation
|
Mizianty, Marcin J
|
|
2011
|
12 |
1 |
|
artikel
|
| 245 |
Integrating GPCR-specific information with full text articles
|
Vroling, Bas
|
|
2011
|
12 |
1 |
|
artikel
|
| 246 |
Integrative set enrichment testing for multiple omics platforms
|
Poisson, Laila M
|
|
2011
|
12 |
1 |
|
artikel
|
| 247 |
Interactive metagenomic visualization in a Web browser
|
Ondov, Brian D
|
|
2011
|
12 |
1 |
|
artikel
|
| 248 |
Investigating the effect of paralogs on microarray gene-set analysis
|
Faure, Andre J
|
|
2011
|
12 |
1 |
|
artikel
|
| 249 |
iPhy: an integrated phylogenetic workbench for supermatrix analyses
|
Jones, Martin O
|
|
2011
|
12 |
1 |
|
artikel
|
| 250 |
IQMNMR: Open source software using time-domain NMR data for automated identification and quantification of metabolites in batches
|
Song, Xu
|
|
2011
|
12 |
1 |
|
artikel
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| 251 |
iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database
|
Mora, Antonio
|
|
2011
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12 |
1 |
|
artikel
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| 252 |
iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex
|
Razick, Sabry
|
|
2011
|
12 |
1 |
|
artikel
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| 253 |
IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data
|
Kim, Hyunsoo
|
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2011
|
12 |
1 |
|
artikel
|
| 254 |
Jetset: selecting the optimal microarray probe set to represent a gene
|
Li, Qiyuan
|
|
2011
|
12 |
1 |
|
artikel
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| 255 |
Joint analysis of transcriptional and post- transcriptional brain tumor data: searching for emergent properties of cellular systems
|
Fronza, Raffaele
|
|
2011
|
12 |
1 |
|
artikel
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| 256 |
Kernel density weighted loess normalization improves the performance of detection within asymmetrical data
|
Hsieh, Wen-Ping
|
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2011
|
12 |
1 |
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artikel
|
| 257 |
Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case
|
Russ, Thomas A
|
|
2011
|
12 |
1 |
|
artikel
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| 258 |
LabKey Server: An open source platform for scientific data integration, analysis and collaboration
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Nelson, Elizabeth K
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2011
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12 |
1 |
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artikel
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| 259 |
Lack of sufficiently strong informative features limits the potential of gene expression analysis as predictive tool for many clinical classification problems
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Hess, Kenneth R
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2011
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12 |
1 |
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artikel
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| 260 |
LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures
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Torres, Clinton
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2011
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12 |
1 |
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artikel
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| 261 |
Learning genetic epistasis using Bayesian network scoring criteria
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Jiang, Xia
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2011
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12 |
1 |
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artikel
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| 262 |
Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure
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Aydin, Zafer
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2011
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12 |
1 |
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artikel
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| 263 |
Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer
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Solvang, Hiroko K
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2011
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12 |
1 |
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artikel
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| 264 |
Link-based quantitative methods to identify differentially coexpressed genes and gene Pairs
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Yu, Hui
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2011
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12 |
1 |
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artikel
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| 265 |
LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates
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Moughon, Stewart E
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2011
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12 |
1 |
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artikel
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| 266 |
Logical Development of the Cell Ontology
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Meehan, Terrence F
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2011
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12 |
1 |
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artikel
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| 267 |
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
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Janssen, Stefan
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2011
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12 |
1 |
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artikel
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| 268 |
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
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Holt, Carson
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2011
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12 |
1 |
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artikel
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| 269 |
MAPI: towards the integrated exploitation of bioinformatics Web Services
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Ramirez, Sergio
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2011
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12 |
1 |
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artikel
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| 270 |
Mapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifs
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Basu, Sankar
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2011
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12 |
1 |
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artikel
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| 271 |
MAVENs: Motion analysis and visualization of elastic networks and structural ensembles
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Zimmermann, Michael T
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2011
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12 |
1 |
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artikel
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| 272 |
MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature
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Fang, Yu-Ching
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2011
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12 |
1 |
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artikel
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| 273 |
Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization
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Roskin, Krishna M
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2011
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12 |
1 |
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artikel
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| 274 |
Meta-analysis of gene expression microarrays with missing replicates
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Shi, Fan
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2011
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12 |
1 |
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artikel
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| 275 |
Meta-analytic approach to the accurate prediction of secreted virulence effectors in gram-negative bacteria
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Sato, Yoshiharu
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2011
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12 |
1 |
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artikel
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| 276 |
MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures
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Tulpan, Dan
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2011
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12 |
1 |
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artikel
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| 277 |
MetaboLab - advanced NMR data processing and analysis for metabolomics
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Ludwig, Christian
|
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2011
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12 |
1 |
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artikel
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| 278 |
Methodology and software to detect viral integration site hot-spots
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Presson, Angela P
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2011
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12 |
1 |
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artikel
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| 279 |
Microarray-based cancer prediction using single genes
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Wang, Xiaosheng
|
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2011
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12 |
1 |
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artikel
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| 280 |
MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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Cai, Bin
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2011
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12 |
1 |
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artikel
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| 281 |
MI-GWAS: a SAS platform for the analysis of inherited and maternal genetic effects in genome-wide association studies using log-linear models
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Agopian, AJ
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2011
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12 |
1 |
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artikel
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| 282 |
MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries
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Chen, Wen Han
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2011
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12 |
1 |
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artikel
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| 283 |
MINE: Module Identification in Networks
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Rhrissorrakrai, Kahn
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2011
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12 |
1 |
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artikel
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| 284 |
Mining for genotype-phenotype relations in Saccharomyces using partial least squares
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Mehmood, Tahir
|
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2011
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12 |
1 |
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artikel
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| 285 |
miREE: miRNA recognition elements ensemble
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Reyes-Herrera, Paula H
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2011
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12 |
1 |
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artikel
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| 286 |
miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM
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Ding, Jiandong
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2011
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12 |
1 |
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artikel
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| 287 |
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model
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Le Béchec, Antony
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2011
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12 |
1 |
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artikel
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| 288 |
MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences
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Wu, Yonggan
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2011
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12 |
1 |
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artikel
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miRTar: an integrated system for identifying miRNA-target interactions in human
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Hsu, Justin Bo-Kai
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2011
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12 |
1 |
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artikel
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| 290 |
Mitochondrial genome sequence analysis: A custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy
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Xie, Hongbo M
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2011
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12 |
1 |
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artikel
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MixtureTree: a program for constructing phylogeny
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Chen, Shu-Chuan
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2011
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12 |
1 |
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artikel
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| 292 |
MLPAstats: An R GUI package for the integrated analysis of copy number alterations using MLPA data
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Cáceres, Alejandro
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2011
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12 |
1 |
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artikel
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| 293 |
Modeling measurement error in tumor characterization studies
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Rakovski, Cyril
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2011
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12 |
1 |
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artikel
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| 294 |
MolabIS - An integrated information system for storing and managing molecular genetics data
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Truong, Cong VC
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2011
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12 |
1 |
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artikel
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| 295 |
More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs
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Truszkowski, Jakub
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2011
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12 |
1 |
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artikel
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| 296 |
Morphometic analysis of TCGA glioblastoma multiforme
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Chang, Hang
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2011
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12 |
1 |
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artikel
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| 297 |
MotifClick: prediction of cis-regulatory binding sites via merging cliques
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Zhang, Shaoqiang
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2011
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12 |
1 |
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artikel
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| 298 |
Motif-guided sparse decomposition of gene expression data for regulatory module identification
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Gong, Ting
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2011
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12 |
1 |
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artikel
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| 299 |
MotifMap: integrative genome-wide maps of regulatory motif sites for model species
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Daily, Kenneth
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2011
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12 |
1 |
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artikel
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| 300 |
MRCQuant- an accurate LC-MS relative isotopic quantification algorithm on TOF instruments
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Haskins, William E
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2011
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12 |
1 |
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artikel
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| 301 |
MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts
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Deng, Xin
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2011
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12 |
1 |
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artikel
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| 302 |
MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity
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Huang, Wen
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2011
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12 |
1 |
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artikel
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Mulcom: a multiple comparison statistical test for microarray data in Bioconductor
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Isella, Claudio
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2011
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12 |
1 |
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artikel
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| 304 |
Multiclass classification of microarray data samples with a reduced number of genes
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Tapia, Elizabeth
|
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2011
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12 |
1 |
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artikel
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| 305 |
Multilocus association mapping using generalized ridge logistic regression
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Liu, Zhe
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2011
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12 |
1 |
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artikel
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| 306 |
Multiple-input multiple-output causal strategies for gene selection
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Bontempi, Gianluca
|
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2011
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12 |
1 |
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artikel
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| 307 |
Multiple testing for gene sets from microarray experiments
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Sohn, Insuk
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2011
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12 |
1 |
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artikel
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| 308 |
Multi-target QSAR modelling in the analysis and design of HIV-HCV co-inhibitors: an in-silico study
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Liu, Qi
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2011
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12 |
1 |
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artikel
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Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
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Sükösd, Zsuzsanna
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2011
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12 |
1 |
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artikel
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| 310 |
Multivariate analysis of microarray data: differential expression and differential connection
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Kiiveri, Harri T
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2011
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12 |
1 |
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artikel
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| 311 |
Mutagenesis Objective Search and Selection Tool (MOSST): an algorithm to predict structure-function related mutations in proteins
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Olivera-Nappa, Alvaro
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2011
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12 |
1 |
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artikel
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| 312 |
NanoStriDE: normalization and differential expression analysis of NanoString nCounter data
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Brumbaugh, Christopher D
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2011
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1 |
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NCACO-score: An effective main-chain dependent scoring function for structure modeling
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Tian, Liqing
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2011
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12 |
1 |
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artikel
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NClassG+: A classifier for non-classically secreted Gram-positive bacterial proteins
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Restrepo-Montoya, Daniel
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2011
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12 |
1 |
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artikel
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NETGEM: Network Embedded Temporal GEnerative Model for gene expression data
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Jethava, Vinay
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2011
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12 |
1 |
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artikel
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| 316 |
Network-based group variable selection for detecting expression quantitative trait loci (eQTL)
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Wang, Weichen
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2011
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12 |
1 |
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artikel
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| 317 |
Network based transcription factor analysis of regenerating axolotl limbs
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Jhamb, Deepali
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2011
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12 |
1 |
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artikel
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| 318 |
NeurphologyJ: An automatic neuronal morphology quantification method and its application in pharmacological discovery
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Ho, Shinn-Ying
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2011
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12 |
1 |
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artikel
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| 319 |
New concepts for building vocabulary for cell image ontologies
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Plant, Anne L
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2011
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12 |
1 |
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artikel
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| 320 |
New methods to measure residues coevolution in proteins
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Gao, Hongyun
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2011
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12 |
1 |
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artikel
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| 321 |
New words in human mutagenesis
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Panchin, Alexander Y
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2011
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12 |
1 |
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artikel
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| 322 |
N-gram analysis of 970 microbial organisms reveals presence of biological language models
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Osmanbeyoglu, Hatice Ulku
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2011
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12 |
1 |
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artikel
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| 323 |
nocoRNAc: Characterization of non-coding RNAs in prokaryotes
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Herbig, Alexander
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2011
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12 |
1 |
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artikel
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| 324 |
NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins
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Scott, Michelle S
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2011
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12 |
1 |
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artikel
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| 325 |
Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme
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Kritikos, George D
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2011
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12 |
1 |
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artikel
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| 326 |
NORMA-Gene: A simple and robust method for qPCR normalization based on target gene data
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Heckmann, Lars-Henrik
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2011
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12 |
1 |
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artikel
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| 327 |
Normalization and centering of array-based heterologous genome hybridization based on divergent control probes
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Darby, Brian J
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2011
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12 |
1 |
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artikel
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| 328 |
Normalizing for individual cell population context in the analysis of high-content cellular screens
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Knapp, Bettina
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2011
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12 |
1 |
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artikel
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| 329 |
Novel computational analysis of protein binding array data identifies direct targets of Nkx2.2 in the pancreas
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Hill, Jonathon T
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2011
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12 |
1 |
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artikel
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| 330 |
NSMAP: A method for spliced isoforms identification and quantification from RNA-Seq
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Xia, Zheng
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2011
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12 |
1 |
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artikel
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| 331 |
Objective identification of residue ranges for the superposition of protein structures
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Kirchner, Donata K
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2011
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12 |
1 |
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artikel
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| 332 |
OmniMapFree: A unified tool to visualise and explore sequenced genomes
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Antoniw, John
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2011
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12 |
1 |
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artikel
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| 333 |
OntoCAT -- simple ontology search and integration in Java, R and REST/JavaScript
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Adamusiak, Tomasz
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2011
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12 |
1 |
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artikel
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| 334 |
openBIS: a flexible framework for managing and analyzing complex data in biology research
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Bauch, Angela
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2011
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12 |
1 |
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artikel
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| 335 |
Open-target sparse sensing of biological agents using DNA microarray
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Mohtashemi, Mojdeh
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2011
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12 |
1 |
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artikel
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| 336 |
OrthoInspector: comprehensive orthology analysis and visual exploration
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Linard, Benjamin
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2011
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12 |
1 |
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artikel
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| 337 |
Outer membrane proteins can be simply identified using secondary structure element alignment
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Yan, Ren-Xiang
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2011
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12 |
1 |
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artikel
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| 338 |
Parallelized short read assembly of large genomes using de Bruijn graphs
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Liu, Yongchao
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2011
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12 |
1 |
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artikel
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| 339 |
Partition decoupling for multi-gene analysis of gene expression profiling data
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Braun, Rosemary
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2011
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12 |
1 |
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artikel
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| 340 |
Pathway-based analysis using reduced gene subsets in genome-wide association studies
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Zhao, Jingyuan
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2011
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12 |
1 |
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artikel
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| 341 |
PChopper: high throughput peptide prediction for MRM/SRM transition design
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Afzal, Vackar
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2011
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12 |
1 |
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artikel
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pcrEfficiency: a Web tool for PCR amplification efficiency prediction
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Mallona, Izaskun
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2011
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12 |
1 |
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artikel
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| 343 |
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
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Feng, Xin
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2011
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12 |
1 |
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artikel
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| 344 |
PeptX: Using Genetic Algorithms to optimize peptides for MHC binding
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Knapp, Bernhard
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2011
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12 |
1 |
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artikel
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| 345 |
Performance analysis of novel methods for detecting epistasis
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Shang, Junliang
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2011
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12 |
1 |
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artikel
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| 346 |
PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries
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Barbosa-Silva, Adriano
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2011
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12 |
1 |
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artikel
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| 347 |
Phamerator: a bioinformatic tool for comparative bacteriophage genomics
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Cresawn, Steven G
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2011
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12 |
1 |
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artikel
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PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data
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Chang, Wenling E
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2011
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12 |
1 |
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artikel
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phenosim - A software to simulate phenotypes for testing in genome-wide association studies
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Günther, Torsten
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2011
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12 |
1 |
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artikel
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Phenotype Recognition with Combined Features and Random Subspace Classifier Ensemble
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Zhang, Bailing
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2011
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12 |
1 |
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artikel
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| 351 |
Phylogenetically informed logic relationships improve detection of biological network organization
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Cui, Jike
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2011
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12 |
1 |
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artikel
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| 352 |
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome
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Zhang, Jiajie
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2011
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12 |
1 |
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artikel
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PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
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Sipos, Botond
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2011
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12 |
1 |
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artikel
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PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum
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Qiao, Yantao
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2011
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12 |
1 |
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artikel
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PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination
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Lücking, Robert
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2011
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12 |
1 |
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artikel
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PileLine: a toolbox to handle genome position information in next-generation sequencing studies
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Glez-Peña, Daniel
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2011
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12 |
1 |
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artikel
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PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity
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Lee, Tzong-Yi
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2011
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12 |
1 |
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artikel
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PMS5: an efficient exact algorithm for the (ℓ, d)-motif finding problem
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Dinh, Hieu
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2011
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12 |
1 |
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artikel
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POPISK: T-cell reactivity prediction using support vector machines and string kernels
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Tung, Chun-Wei
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2011
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12 |
1 |
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artikel
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PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality
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Dehouck, Yves
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2011
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12 |
1 |
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artikel
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Predicting disease-associated substitution of a single amino acid by analyzing residue interactions
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Li, Yizhou
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2011
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12 |
1 |
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artikel
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| 362 |
Predicting drug side-effect profiles: a chemical fragment-based approach
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Pauwels, Edouard
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2011
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12 |
1 |
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artikel
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| 363 |
Predicting functionally important SNP classes based on negative selection
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Levenstien, Mark A
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2011
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12 |
1 |
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artikel
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| 364 |
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology
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Pillmann, Holger
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2011
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12 |
1 |
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artikel
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| 365 |
Predicting protein ligand binding motions with the conformation explorer
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Flores, Samuel C
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2011
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12 |
1 |
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artikel
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| 366 |
Predicting receptor-ligand pairs through kernel learning
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Iacucci, Ernesto
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2011
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12 |
1 |
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artikel
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| 367 |
Predicting RNA-Protein Interactions Using Only Sequence Information
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Muppirala, Usha K
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2011
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12 |
1 |
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artikel
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Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature
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Zhang, Wen
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2011
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12 |
1 |
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artikel
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Prediction of protein-binding areas by small-world residue networks and application to docking
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Pons, Carles
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2011
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1 |
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artikel
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Prediction using step-wise L1, L2 regularization and feature selection for small data sets with large number of features
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Demir-Kavuk, Ozgur
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2011
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12 |
1 |
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artikel
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PRIN: a predicted rice interactome network
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Gu, Haibin
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2011
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12 |
1 |
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artikel
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ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity
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Zhang, Shenghui
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2011
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artikel
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pROC: an open-source package for R and S+ to analyze and compare ROC curves
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Robin, Xavier
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2011
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artikel
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ProDiGe: Prioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples
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Mordelet, Fantine
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2011
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artikel
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Properties of metabolic graphs: biological organization or representation artifacts?
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Zhou, Wanding
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2011
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12 |
1 |
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artikel
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ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process
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Basu, Malay K
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2011
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12 |
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artikel
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Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics
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Bergemann, Tracy L
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2011
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12 |
1 |
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artikel
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Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
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Blazewicz, Jacek
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2011
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12 |
1 |
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artikel
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Proteinortho: Detection of (Co-)orthologs in large-scale analysis
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Lechner, Marcus
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2011
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12 |
1 |
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artikel
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| 380 |
Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics
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Chepelev, Leonid L
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2011
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12 |
1 |
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artikel
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| 381 |
Quantification of protein group coherence and pathway assignment using functional association
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Chitale, Meghana
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2011
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1 |
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artikel
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| 382 |
Quantitative characterization and analysis of the dynamic NF-κB response in microglia
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Sheppard, Patrick W
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2011
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12 |
1 |
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artikel
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| 383 |
Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data
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Gao, Shouguo
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2011
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12 |
1 |
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artikel
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| 384 |
Querying large read collections in main memory: a versatile data structure
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Philippe, Nicolas
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2011
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12 |
1 |
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artikel
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Qxpak.5: Old mixed model solutions for new genomics problems
|
Pérez-Enciso, Miguel
|
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2011
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12 |
1 |
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artikel
|
| 386 |
RAG: An update to the RNA-As-Graphs resource
|
Izzo, Joseph A
|
|
2011
|
12 |
1 |
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artikel
|
| 387 |
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
|
Nalbantoglu, Ozkan U
|
|
2011
|
12 |
1 |
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artikel
|
| 388 |
Randomization techniques for assessing the significance of gene periodicity results
|
Kallio, Aleksi
|
|
2011
|
12 |
1 |
|
artikel
|
| 389 |
Random KNN feature selection - a fast and stable alternative to Random Forests
|
Li, Shengqiao
|
|
2011
|
12 |
1 |
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artikel
|
| 390 |
Ranking insertion, deletion and nonsense mutations based on their effect on genetic information
|
Zia, Amin
|
|
2011
|
12 |
1 |
|
artikel
|
| 391 |
rapmad: Robust analysis of peptide microarray data
|
Renard, Bernhard Y
|
|
2011
|
12 |
1 |
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artikel
|
| 392 |
RAPSearch: a fast protein similarity search tool for short reads
|
Ye, Yuzhen
|
|
2011
|
12 |
1 |
|
artikel
|
| 393 |
ReadDB Provides Efficient Storage for Mapped Short Reads
|
Rolfe, P Alexander
|
|
2011
|
12 |
1 |
|
artikel
|
| 394 |
Rebooting the human mitochondrial phylogeny: an automated and scalable methodology with expert knowledge
|
Blanco, Roberto
|
|
2011
|
12 |
1 |
|
artikel
|
| 395 |
Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
|
Fu, Yao
|
|
2011
|
12 |
1 |
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artikel
|
| 396 |
ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets
|
Frazee, Alyssa C
|
|
2011
|
12 |
1 |
|
artikel
|
| 397 |
RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
|
Zeeberg, Barry R
|
|
2011
|
12 |
1 |
|
artikel
|
| 398 |
RegNetB: Predicting Relevant Regulator-Gene Relationships in Localized Prostate Tumor Samples
|
Alvarez, Angel
|
|
2011
|
12 |
1 |
|
artikel
|
| 399 |
Removing Noise From Pyrosequenced Amplicons
|
Quince, Christopher
|
|
2011
|
12 |
1 |
|
artikel
|
| 400 |
Reporting FDR analogous confidence intervals for the log fold change of differentially expressed genes
|
Jung, Klaus
|
|
2011
|
12 |
1 |
|
artikel
|
| 401 |
Revision history aware repositories of computational models of biological systems
|
Miller, Andrew K
|
|
2011
|
12 |
1 |
|
artikel
|
| 402 |
Rigorous assessment and integration of the sequence and structure based features to predict hot spots
|
Chen, Ruoying
|
|
2011
|
12 |
1 |
|
artikel
|
| 403 |
RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences
|
Avihoo, Assaf
|
|
2011
|
12 |
1 |
|
artikel
|
| 404 |
rnaSeqMap: a Bioconductor package for RNA sequencing data exploration
|
Leśniewska, Anna
|
|
2011
|
12 |
1 |
|
artikel
|
| 405 |
Robust joint analysis allowing for model uncertainty in two-stage genetic association studies
|
Pan, Dongdong
|
|
2011
|
12 |
1 |
|
artikel
|
| 406 |
R2R - software to speed the depiction of aesthetic consensus RNA secondary structures
|
Weinberg, Zasha
|
|
2011
|
12 |
1 |
|
artikel
|
| 407 |
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
|
Li, Bo
|
|
2011
|
12 |
1 |
|
artikel
|
| 408 |
SAQC: SNP Array Quality Control
|
Yang, Hsin-Chou
|
|
2011
|
12 |
1 |
|
artikel
|
| 409 |
SCFIA: a statistical corresponding feature identification algorithm for LC/MS
|
Cui, Jian
|
|
2011
|
12 |
1 |
|
artikel
|
| 410 |
SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds
|
Teyra, Joan
|
|
2011
|
12 |
1 |
|
artikel
|
| 411 |
Screening synteny blocks in pairwise genome comparisons through integer programming
|
Tang, Haibao
|
|
2011
|
12 |
1 |
|
artikel
|
| 412 |
Segmentation and intensity estimation for microarray images with saturated pixels
|
Yang, Yan
|
|
2011
|
12 |
1 |
|
artikel
|
| 413 |
SegMine workflows for semantic microarray data analysis in Orange4WS
|
Podpečan, Vid
|
|
2011
|
12 |
1 |
|
artikel
|
| 414 |
Selection of organisms for the co-evolution-based study of protein interactions
|
Herman, Dorota
|
|
2011
|
12 |
1 |
|
artikel
|
| 415 |
Selective Phenotyping, Entropy Reduction, and the Mastermind game
|
Gagneur, Julien
|
|
2011
|
12 |
1 |
|
artikel
|
| 416 |
Semantic annotation of biological concepts interplaying microbial cellular responses
|
Carreira, Rafael
|
|
2011
|
12 |
1 |
|
artikel
|
| 417 |
Semantic inference using chemogenomics data for drug discovery
|
Zhu, Qian
|
|
2011
|
12 |
1 |
|
artikel
|
| 418 |
Semi-Automatic segmentation of multiple mouse embryos in MR images
|
Baghdadi, Leila
|
|
2011
|
12 |
1 |
|
artikel
|
| 419 |
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
|
Deng, Xutao
|
|
2011
|
12 |
1 |
|
artikel
|
| 420 |
Sequential interim analyses of survival data in DNA microarray experiments
|
Leha, Andreas
|
|
2011
|
12 |
1 |
|
artikel
|
| 421 |
Shape-based peak identification for ChIP-Seq
|
Hower, Valerie
|
|
2011
|
12 |
1 |
|
artikel
|
| 422 |
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
|
Zagordi, Osvaldo
|
|
2011
|
12 |
1 |
|
artikel
|
| 423 |
SIGNATURE: A workbench for gene expression signature analysis
|
Chang, Jeffrey T
|
|
2011
|
12 |
1 |
|
artikel
|
| 424 |
Significance testing in ridge regression for genetic data
|
Cule, Erika
|
|
2011
|
12 |
1 |
|
artikel
|
| 425 |
Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns
|
Gruel, Jérémy
|
|
2011
|
12 |
1 |
|
artikel
|
| 426 |
Simulated evolution applied to study the genetic code optimality using a model of codon reassignments
|
Santos, José
|
|
2011
|
12 |
1 |
|
artikel
|
| 427 |
Smith-Waterman peak alignment for comprehensive two-dimensional gas chromatography-mass spectrometry
|
Kim, Seongho
|
|
2011
|
12 |
1 |
|
artikel
|
| 428 |
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects
|
Dereeper, Alexis
|
|
2011
|
12 |
1 |
|
artikel
|
| 429 |
SNP-based pathway enrichment analysis for genome-wide association studies
|
Weng, Lingjie
|
|
2011
|
12 |
1 |
|
artikel
|
| 430 |
SNPInterForest: A new method for detecting epistatic interactions
|
Yoshida, Makiko
|
|
2011
|
12 |
1 |
|
artikel
|
| 431 |
SNPPicker: High quality tag SNP selection across multiple populations
|
Sicotte, Hugues
|
|
2011
|
12 |
1 |
|
artikel
|
| 432 |
Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform
|
Eckel-Passow, Jeanette E
|
|
2011
|
12 |
1 |
|
artikel
|
| 433 |
Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems
|
Lê Cao, Kim-Anh
|
|
2011
|
12 |
1 |
|
artikel
|
| 434 |
S3QL: A distributed domain specific language for controlled semantic integration of life sciences data
|
Deus , Helena F
|
|
2011
|
12 |
1 |
|
artikel
|
| 435 |
ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs
|
Sanders, Marijn PA
|
|
2011
|
12 |
1 |
|
artikel
|
| 436 |
Statistical learning techniques applied to epidemiology: a simulated case-control comparison study with logistic regression
|
Heine, John J
|
|
2011
|
12 |
1 |
|
artikel
|
| 437 |
Statistical methods for analyzing immunosignatures
|
Brown, Justin R
|
|
2011
|
12 |
1 |
|
artikel
|
| 438 |
Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments
|
Missirian, Victor
|
|
2011
|
12 |
1 |
|
artikel
|
| 439 |
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies
|
Martini, Paolo
|
|
2011
|
12 |
1 |
|
artikel
|
| 440 |
Stepwise classification of cancer samples using clinical and molecular data
|
Obulkasim, Askar
|
|
2011
|
12 |
1 |
|
artikel
|
| 441 |
Stereochemical errors and their implications for molecular dynamics simulations
|
Schreiner, Eduard
|
|
2011
|
12 |
1 |
|
artikel
|
| 442 |
Stochastic sequence-level model of coupled transcription and translation in prokaryotes
|
Mäkelä, Jarno
|
|
2011
|
12 |
1 |
|
artikel
|
| 443 |
StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase
|
Zemla, Adam T
|
|
2011
|
12 |
1 |
|
artikel
|
| 444 |
Strategies for aggregating gene expression data: The collapseRows R function
|
Miller, Jeremy A
|
|
2011
|
12 |
1 |
|
artikel
|
| 445 |
Structator: fast index-based search for RNA sequence-structure patterns
|
Meyer, Fernando
|
|
2011
|
12 |
1 |
|
artikel
|
| 446 |
Structural Measures for Network Biology Using QuACN
|
Mueller, Laurin AJ
|
|
2011
|
12 |
1 |
|
artikel
|
| 447 |
STSE: Spatio-Temporal Simulation Environment Dedicated to Biology
|
Stoma, Szymon
|
|
2011
|
12 |
1 |
|
artikel
|
| 448 |
Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts
|
Plaza, Laura
|
|
2011
|
12 |
1 |
|
artikel
|
| 449 |
Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and structure
|
Limpiti, Tulaya
|
|
2011
|
12 |
1 |
|
artikel
|
| 450 |
SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation
|
Anderson, Catherine L
|
|
2011
|
12 |
1 |
|
artikel
|
| 451 |
Supervised Regularized Canonical Correlation Analysis: integrating histologic and proteomic measurements for predicting biochemical recurrence following prostate surgery
|
Golugula, Abhishek
|
|
2011
|
12 |
1 |
|
artikel
|
| 452 |
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays
|
Eichner, Johannes
|
|
2011
|
12 |
1 |
|
artikel
|
| 453 |
Survival models with preclustered gene groups as covariates
|
Kammers, Kai
|
|
2011
|
12 |
1 |
|
artikel
|
| 454 |
Swiftly Computing Center Strings
|
Hufsky, Franziska
|
|
2011
|
12 |
1 |
|
artikel
|
| 455 |
Systematic error detection in experimental high-throughput screening
|
Dragiev, Plamen
|
|
2011
|
12 |
1 |
|
artikel
|
| 456 |
TAFFEL: Independent Enrichment Analysis of gene sets
|
Kurki, Mitja I
|
|
2011
|
12 |
1 |
|
artikel
|
| 457 |
Taxon ordering in phylogenetic trees: a workbench test
|
Cerutti, Francesco
|
|
2011
|
12 |
1 |
|
artikel
|
| 458 |
Techniques for analysing pattern formation in populations of stem cells and their progeny
|
Fozard, John A
|
|
2011
|
12 |
1 |
|
artikel
|
| 459 |
Thawing Frozen Robust Multi-array Analysis (fRMA)
|
McCall, Matthew N
|
|
2011
|
12 |
1 |
|
artikel
|
| 460 |
The BioLexicon: a large-scale terminological resource for biomedical text mining
|
Thompson, Paul
|
|
2011
|
12 |
1 |
|
artikel
|
| 461 |
The biomedical discourse relation bank
|
Prasad, Rashmi
|
|
2011
|
12 |
1 |
|
artikel
|
| 462 |
The dChip survival analysis module for microarray data
|
Amin, Samir B
|
|
2011
|
12 |
1 |
|
artikel
|
| 463 |
The impact of quantitative optimization of hybridization conditions on gene expression analysis
|
Sykacek, Peter
|
|
2011
|
12 |
1 |
|
artikel
|
| 464 |
The PathOlogist: an automated tool for pathway-centric analysis
|
Greenblum, Sharon I
|
|
2011
|
12 |
1 |
|
artikel
|
| 465 |
The projection score - an evaluation criterion for variable subset selection in PCA visualization
|
Fontes, Magnus
|
|
2011
|
12 |
1 |
|
artikel
|
| 466 |
The Proteogenomic Mapping Tool
|
Sanders, William S
|
|
2011
|
12 |
1 |
|
artikel
|
| 467 |
The representation of protein complexes in the Protein Ontology (PRO)
|
Bult, Carol J
|
|
2011
|
12 |
1 |
|
artikel
|
| 468 |
The volatile compound BinBase mass spectral database
|
Skogerson, Kirsten
|
|
2011
|
12 |
1 |
|
artikel
|
| 469 |
Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling
|
Rousseau, Mathieu
|
|
2011
|
12 |
1 |
|
artikel
|
| 470 |
Tiling array data analysis: a multiscale approach using wavelets
|
Karpikov, Alexander
|
|
2011
|
12 |
1 |
|
artikel
|
| 471 |
To aggregate or not to aggregate high-dimensional classifiers
|
Xu, Cheng-Jian
|
|
2011
|
12 |
1 |
|
artikel
|
| 472 |
Toponomics method for the automated quantification of membrane protein translocation
|
Domanova, Olga
|
|
2011
|
12 |
1 |
|
artikel
|
| 473 |
Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction
|
Shi, Ping
|
|
2011
|
12 |
1 |
|
artikel
|
| 474 |
Toward an interactive article: integrating journals and biological databases
|
Rangarajan, Arun
|
|
2011
|
12 |
1 |
|
artikel
|
| 475 |
Towards an Age-Phenome Knowledge-base
|
Geifman, Nophar
|
|
2011
|
12 |
1 |
|
artikel
|
| 476 |
Tree edit distance for leaf-labelled trees on free leafset and its comparison with frequent subsplit dissimilarity and popular distance measures
|
Koperwas, Jakub
|
|
2011
|
12 |
1 |
|
artikel
|
| 477 |
Tree pruner: An efficient tool for selecting data from a biased genetic database
|
Krishnamoorthy, Mohan
|
|
2011
|
12 |
1 |
|
artikel
|
| 478 |
TreeRipper web application: towards a fully automated optical tree recognition software
|
Hughes, Joseph
|
|
2011
|
12 |
1 |
|
artikel
|
| 479 |
TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences
|
Harmanci, Arif O
|
|
2011
|
12 |
1 |
|
artikel
|
| 480 |
U-Compare bio-event meta-service: compatible BioNLP event extraction services
|
Kano, Yoshinobu
|
|
2011
|
12 |
1 |
|
artikel
|
| 481 |
Ultra-fast sequence clustering from similarity networks with SiLiX
|
Miele, Vincent
|
|
2011
|
12 |
1 |
|
artikel
|
| 482 |
Unintended consequences of existential quantifications in biomedical ontologies
|
Boeker, Martin
|
|
2011
|
12 |
1 |
|
artikel
|
| 483 |
Unraveling gene regulatory networks from time-resolved gene expression data -- a measures comparison study
|
Hempel, Sabrina
|
|
2011
|
12 |
1 |
|
artikel
|
| 484 |
Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis
|
Borile, Claudio
|
|
2011
|
12 |
1 |
|
artikel
|
| 485 |
Using context to improve protein domain identification
|
Ochoa, Alejandro
|
|
2011
|
12 |
1 |
|
artikel
|
| 486 |
Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets
|
Chipman, Kyle C
|
|
2011
|
12 |
1 |
|
artikel
|
| 487 |
Validating clustering of molecular dynamics simulations using polymer models
|
Phillips, Joshua L
|
|
2011
|
12 |
1 |
|
artikel
|
| 488 |
Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny
|
Chang, Qin
|
|
2011
|
12 |
1 |
|
artikel
|
| 489 |
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
|
Chen, Hanbo
|
|
2011
|
12 |
1 |
|
artikel
|
| 490 |
Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment
|
Naznin, Farhana
|
|
2011
|
12 |
1 |
|
artikel
|
| 491 |
Visual gene developer: a fully programmable bioinformatics software for synthetic gene optimization
|
Jung, Sang-Kyu
|
|
2011
|
12 |
1 |
|
artikel
|
| 492 |
Visualizing Meta-Features in Proteomic Maps
|
Giannopoulou, Eugenia G
|
|
2011
|
12 |
1 |
|
artikel
|
| 493 |
Was the Scanner Calibration Slide used for its intended purpose?
|
Zhang, Shannon
|
|
2011
|
12 |
1 |
|
artikel
|
| 494 |
Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays
|
Hur, Youngmi
|
|
2011
|
12 |
1 |
|
artikel
|
| 495 |
Web-based metabolic network visualization with a zooming user interface
|
Latendresse, Mario
|
|
2011
|
12 |
1 |
|
artikel
|
| 496 |
Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community
|
Schindelman, Gary
|
|
2011
|
12 |
1 |
|
artikel
|
| 497 |
ZFN-Site searches genomes for zinc finger nuclease target sites and off-target sites
|
Cradick, Thomas J
|
|
2011
|
12 |
1 |
|
artikel
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