| no |
title |
author |
magazine |
year |
volume |
issue |
page(s) |
type |
| 1 |
A BioID-derived proximity interactome for Protein Phosphatase PP2A
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21 |
8S |
p.
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article
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| 2 |
Activity-based proteomic profiling reveals reduction of lipid hydrolase activity levels in non-small cell lung cancer tumors
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21 |
8S |
p.
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article
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| 3 |
A high-throughput sample preparation approach for label-free and multiplexed single-cell proteomics.
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21 |
8S |
p.
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article
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| 4 |
An accurate large-scale human E3 ligase concentration map for next-generation TPD-based precision medicine created by MaxQuantAtlas
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21 |
8S |
p.
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article
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| 5 |
An AI-driven leap forward in peptide identification through deconvolution of chimeric spectra
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21 |
8S |
p.
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article
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| 6 |
Analyzing N-Glycosylation Biosynthetic Networks Using Mass Spectrometry
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21 |
8S |
p.
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article
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| 7 |
An integrated data processing and visualization suite leveraging cloud scalable architecture for large-cohort proteogenomics data analysis and interpretation
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21 |
8S |
p.
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article
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| 8 |
Antibody-based enrichment of phosphotyrosine peptides using magnetic beads simplifies and outperforms results obtained using Protein A agarose beads
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21 |
8S |
p.
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article
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| 9 |
Application of stable isotope labelingbased quantitative PTM proteomics and interactomics in study of Arabidopsis cell signaling
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21 |
8S |
p.
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article
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| 10 |
A Rapid and Simple Method to Purify Phosphatidylethanolamine Plasmalogens from Bovine or Porcine Brains
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21 |
8S |
p.
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article
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| 11 |
A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics
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21 |
8S |
p.
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article
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| 12 |
Author Index
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21 |
8S |
p.
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article
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| 13 |
Automated Acetylome Enrichment with Novel Acetyl-Lysine Magnetic Immunoaffinity Beads Allows for High Through-put and Deep Coverage of Lysine Acetylome
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21 |
8S |
p.
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article
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| 14 |
Automated workflows for DIA data using DIA-NN on the PaSER platform
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21 |
8S |
p.
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article
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| 15 |
Back Cover
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21 |
8S |
p.
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article
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| 16 |
BAMS: A Robust Analytical Platform for Quantifying Histone Modifications and Various Proteoforms by IP MALDI MS
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21 |
8S |
p.
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article
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| 17 |
Cancer cells modulate the effects of copy number variation on protein abundance
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21 |
8S |
p.
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article
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| 18 |
Capture, release, and identification of newly synthesized proteins for improved translatome profiling
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21 |
8S |
p.
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article
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| 19 |
Characterizing proteome regulation and cell signaling by nascent proteomics: anaha-experience
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21 |
8S |
p.
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article
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| 20 |
Chemoproteomic capture of RNA binding activity in living cells
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21 |
8S |
p.
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article
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| 21 |
Chemoproteomic identification and functional characterization of colibactinmodified proteins that drive colorectal cancer progression
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21 |
8S |
p.
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article
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| 22 |
Chemoproteomic identification of functional microproteins
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21 |
8S |
p.
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article
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| 23 |
Chemoproteomics-enabled de novo discovery of metallothionein degraders
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21 |
8S |
p.
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article
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| 24 |
Clinical Phosphoproteomics to Uncover New Therapeutic Strategies
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21 |
8S |
p.
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article
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| 25 |
Combining proteomics (and other omics) and biological knowledge to extract disease mechanisms
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21 |
8S |
p.
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article
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| 26 |
Comparison of DDA, scanning window DIA, and HDMSE for assigning and quantifying glycopeptides
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21 |
8S |
p.
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article
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| 27 |
Complexome profiling of mitochondrial oxidative phosphorylation knockout models.
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21 |
8S |
p.
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article
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| 28 |
Comprehensive micro-scaled proteome and phosphoproteome characterization of archived retrospective cancer repositories
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21 |
8S |
p.
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article
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| 29 |
Computational challenges of identification and quantification algorithms in single-cell proteomic data.
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21 |
8S |
p.
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article
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| 30 |
Computational challenges of identification and quantification algorithms in single-cell proteomic data.
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21 |
8S |
p.
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article
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| 31 |
Deciphering the highly complex cancer immunopeptidome
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21 |
8S |
p.
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article
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| 32 |
Deciphering the mechanisms regulating GLUT4 translocation in skeletal muscle by spatial proteomics
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21 |
8S |
p.
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article
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| 33 |
DecryptM: Decrypting pathway engagement and mechanisms of action of cancer drugs by dose-resolved proteomics profiling of post-translational modifications
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21 |
8S |
p.
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article
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| 34 |
Defining mitochondrial protein functions through deep multi-omic profiling
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21 |
8S |
p.
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article
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| 35 |
Defining the molecular basis of immune heterogeneity between individuals using immunoproteomics
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21 |
8S |
p.
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article
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| 36 |
Defining The Pharmacometabodynamics of Gefitinib after Intravenous Administration to the Mouse by UHPLC/MS and UPLC-IMMS Study
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21 |
8S |
p.
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article
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| 37 |
Developing Cross-linking Mass Spectrometry to Define Protein Interaction Landscapes
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21 |
8S |
p.
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article
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| 38 |
Direct determination of oligomeric organization of integral membrane proteins and lipids from intact customizable bilayer
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21 |
8S |
p.
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article
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| 39 |
Direct DIA database search with PEAKS Online XPro increases HLA-I peptide identification and bypasses the requirement for large spectral libraries
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21 |
8S |
p.
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article
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| 40 |
Discovery of GSTZ1 as a novel target by using fully functionalized fragment-like probes and chemical proteomics
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21 |
8S |
p.
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article
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| 41 |
Discovery of shared cancer neoantigen epitopes through mass spectrometry analysis of engineered monoallelic cell lines
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21 |
8S |
p.
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article
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| 42 |
Distribution analysis of small metabolites on lens using sand-rose-like ZnO for imaging mass spectrometry
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21 |
8S |
p.
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article
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| 43 |
Easier, More Robust, and Faster Low-flow Quantitative Proteomics Approach
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21 |
8S |
p.
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article
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| 44 |
Editorial Board
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21 |
8S |
p.
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article
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| 45 |
ETV6-NTRK3 oncofusion variant interactomes
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21 |
8S |
p.
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article
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| 46 |
Evaluating timsTOF Pro 2 for the analysis of histone PTMs measured in Global Chromatin Profiling using dia-PASEF and prm-PASEF
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21 |
8S |
p.
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article
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| 47 |
From AI-driven synthetic biology to prediction of molecular phenotypes
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21 |
8S |
p.
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article
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| 48 |
From Patient Skin to Brain: Understanding Neurodegeneration with Fibroblast-iPSCNeuron Proteomics
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21 |
8S |
p.
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article
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| 49 |
Front Cover
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21 |
8S |
p.
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article
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| 50 |
Highly multiplexed label-free imaging of tissue proteoforms using individual ion mass spectrometry
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21 |
8S |
p.
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article
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| 51 |
Highly multiplexed proteome-wide quantitation of functional residues enabled by a novel 11plex-AzidoTMT reagent
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21 |
8S |
p.
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article
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| 52 |
High-throughput cancer proteomic characterization using data-independent mass spectrometry (DIA-MS)
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21 |
8S |
p.
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article
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| 53 |
High-throughput subcellular proteomics reveals phospho-signaling dynamics
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21 |
8S |
p.
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article
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| 54 |
Identification and characterization of alterations in the DARPP-32 protein interactome in rat striatal tissue following cocaine treatment
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21 |
8S |
p.
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article
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| 55 |
Identification of novel viral class I-restricted peptides in Merkel cell carcinoma
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21 |
8S |
p.
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article
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| 56 |
Identification of tumor antigens for cancer immunotherapy
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21 |
8S |
p.
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article
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| 57 |
Increasing the coverage, throughput and accessibility of single-cell proteomics
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21 |
8S |
p.
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article
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| 58 |
Increasing the Throughput of Activity-Based Proteome Profiling Studies with Real-Time Search and Sample Hyperplexing
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21 |
8S |
p.
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article
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| 59 |
Innovations in single-cell proteomics enable exploring functional protein covariation across thousands of single cells
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21 |
8S |
p.
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article
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| 60 |
In Situ Cell-Surface Proteomics: Method Development and Applications in Neurobiology
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21 |
8S |
p.
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article
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| 61 |
Integrative Structural Biology to Understand Biological Complexity
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21 |
8S |
p.
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article
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| 62 |
Intelligent Data Acquisition Approaches for Single Cell Proteomics
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21 |
8S |
p.
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article
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| 63 |
Isolating high-purity extracellular vesicles from human biofluids for proteome analysis
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21 |
8S |
p.
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article
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| 64 |
Leveraging advanced latest-generation data acquisition and MS instrument architecture for improving single cell proteomics experiments
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21 |
8S |
p.
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article
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| 65 |
LFQ workflows for quantitative results on the PaSER platform
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21 |
8S |
p.
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article
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| 66 |
Logistics over Long Distances: Nascent Proteomes in Nerve Axons
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21 |
8S |
p.
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article
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| 67 |
Mapping diverse proteome responses with intelligent mass spectrometry
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21 |
8S |
p.
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article
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| 68 |
Mapping the Degradable Kinome: A Resource for Expedited Degrader Development
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21 |
8S |
p.
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article
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| 69 |
Mass spectrometry and SomaScan technologies to detect a plasma copper proteome in two human populations
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21 |
8S |
p.
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article
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| 70 |
MS-based Detection of Pathogen Antigen Through Immunoprecipitation of Its Proteolytic Peptides
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21 |
8S |
p.
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article
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| 71 |
Multi-nanoparticle Workflow Enables Deep Plasma Proteomics at Scale, with Enhanced Precision, and Depths of Coverage
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21 |
8S |
p.
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article
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| 72 |
Multi-Omics Driven Assessment of Pathobiology in a 3D-Bioprinted Aortic Valve Disease Model Compared to Native Valves and 2D Culture
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21 |
8S |
p.
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article
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| 73 |
Multiplexed proximity biotinylation to uncover the axon initial segment proteome
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21 |
8S |
p.
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article
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| 74 |
Navigating proteomics techniques for molecular profiling of clinical cancer cohorts
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21 |
8S |
p.
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article
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| 75 |
Non-canonical ORFs are detected in immunopeptidome, ubiquitylome, proteome, phosphoproteome andacetylome in multi-omic LC-MS/MS analyses of lung tumors
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21 |
8S |
p.
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article
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| 76 |
Organizing Committee
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21 |
8S |
p.
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article
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| 77 |
Pirating Biology to Probe and Attack the Surfacome in Cancer
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21 |
8S |
p.
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article
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| 78 |
Post-Deconvolution MS/MS Spectra Extraction with Data-Independent Acquisition for Comprehensive Profiling of Urinary Conjugated Metabolome
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21 |
8S |
p.
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article
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| 79 |
Post-translational Modifications and Their Effects on the Conformation and Function of Hsp90 in Embryonic Stem Cells
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21 |
8S |
p.
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article
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| 80 |
PRM-LIVE Accelerates Target Class-based Selectivity Profiling of Small Molecule Inhibitors
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21 |
8S |
p.
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article
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| 81 |
Profiling the cellular signalling state by targeted phoshoproteomics
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21 |
8S |
p.
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article
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| 82 |
Program Schedule
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21 |
8S |
p.
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article
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| 83 |
Prosit boosts mass spectrometry-based proteomics one spectrum at a time
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21 |
8S |
p.
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article
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| 84 |
Proteogenomic analyses of CRISPR inhibited expression of a panel genes associated with Alzheimer's disease and related dementias in iPSC-derived neurons using a fully automated workflow
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21 |
8S |
p.
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article
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| 85 |
Proteogenomic analysis of multiple myeloma reveals therapeutic opportunities and predictive signatures
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21 |
8S |
p.
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article
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| 86 |
Proteome imaging of human pancreas with a novel microPOTS platform
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21 |
8S |
p.
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article
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| 87 |
Proteomic analysis to study the effect of 4-phenylbutyrate treatment on ABCA1 function and trafficking
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21 |
8S |
p.
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article
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| 88 |
PROTEOMIC CHANGES TO THE ANTERIOR CEREBRAL ARTERY IN ALZHEIMER’S DISEASE
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21 |
8S |
p.
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article
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| 89 |
Proteomic Characterization of Renal Cell Carcinoma Using MALDI-MS Imaging
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21 |
8S |
p.
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article
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| 90 |
Proteomic Data Commons (PDC): A Next-Generation Proteomics Data Repository
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21 |
8S |
p.
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article
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| 91 |
Proteomic Identification of Autophagy Cargo Using Novel Tools in Combination with Quantitative Proteomics.
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21 |
8S |
p.
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article
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| 92 |
Proteomic identification of novel kinase pathways in synaptic plasticity
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21 |
8S |
p.
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article
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| 93 |
Proteomics of spatially identified tissues in whole organs
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21 |
8S |
p.
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article
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| 94 |
Proximity-dependent sensors for signaling
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21 |
8S |
p.
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article
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| 95 |
Proximity labelling directed by ligand-receptor recognition identifies oncomodulin receptor in primary neurons.
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21 |
8S |
p.
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article
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| 96 |
Quantification of Proteomic and Post-translational Changes during Kidney Injury and Protective Effects in Response to Genetic and Dietary Interventions
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21 |
8S |
p.
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article
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| 97 |
Quantitative active and total kallikrein assay in human vitreous by LC/MS and its potential application in diabetic macular edema (DME) patients
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21 |
8S |
p.
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article
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| 98 |
Quantitative Dissection of Healthy Aging and Early Cognitive Decline Using Proteoform Signatures from Paired CSF and Plasma
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21 |
8S |
p.
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article
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| 99 |
Quantitative proteomics identifies TUBB6 as a potential biomarker of muscle-invasive bladder cancer
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21 |
8S |
p.
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article
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| 100 |
Retention time prediction boosts confidence in identification of tumorspecific antigens in HLA immunopeptidomics
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21 |
8S |
p.
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article
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| 101 |
Robust and accurate redox metabolomics and proteomics of clinical samples by in situ derivatization of free thiols
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21 |
8S |
p.
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article
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| 102 |
Simultaneous quantification of GDF15 and IGFBP7 by LC-MS/MS for studies on hyperemesis gravidarum
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21 |
8S |
p.
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article
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| 103 |
Spatial proteomics via enzyme-catalyzed proximity labeling
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21 |
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p.
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article
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| 104 |
Structural alterations in the extracellular matrix in the brain diseases
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p.
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article
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| 105 |
Table of Contents
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article
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| 106 |
Targeted LC/MRM-MS analysis of 60 biomarkers on the Health Surveillance Panel (HSP) and DIA analysis of matched venous whole blood, plasma and capillary whole blood collected on remote sampling device
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21 |
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p.
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article
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| 107 |
Temporal dynamics of the multi-omic response to endurance exercise training across tissues
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21 |
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p.
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article
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| 108 |
Temporal profiling of newly translated proteome in Mycobacterium tuberculosis Infected macrophage cells
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p.
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article
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| 109 |
The Cancer Cell Mapping Initiative
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21 |
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p.
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article
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| 110 |
The immunopeptidomic landscape of breast cancer.
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p.
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article
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| 111 |
The rise of molecular glues and bifunctional compounds
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p.
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article
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| 112 |
The social architecture of an in-depth cellular protein interactome
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p.
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article
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| 113 |
The Target Engagement Atlas – Mapping cellular responses through proteome thermal stability changes
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article
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| 114 |
The UK Biobank Pharma Proteomics Project (UKB-PPP) - A Personal Perspective
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article
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| 115 |
Three-dimensional feature matching improves the sensitivity of single-cell and spatial proteomics
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article
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| 116 |
Toward Comprehensive, Single-molecule Proteomics: Protein Identification by Shortepitope Mapping
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| 117 |
Tracking drug action at the cell surface and the secreted proteome
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| 118 |
Trypanosoma cruzi cardiomyocyte infection promotes innate immune response and metabolic rewiring
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article
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| 119 |
Ultra-high sensitivity proteomics for precision oncology
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| 120 |
Using multi-omic network analysis to identify cancer-relevant signaling pathways and novel biomarkers
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article
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| 121 |
Validation of Predicted Neoantigens in Patient Derived Material by Targeted Mass Spectrometry
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| 122 |
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Yellow Fever Blood Proteomics Study by Trapped Ion Mobility Mass Spectrometry
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Journal description