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                             166 results found
no title author magazine year volume issue page(s) type
1 Accelerating the Field of Epigenetic Histone Modification Through Mass Spectrometry–Based Approaches Lu, Congcong

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2 A Chemical Acetylation-Based Mass Spectrometry Platform for Histone Methylation Profiling Zappacosta, Francesca

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3 A Complex Proteomic Response of the Parasitic Nematode Anisakis simplex s.s. to Escherichia coli Lipopolysaccharide Mierzejewski, Karol

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4 Adipose Triglyceride Lipase Loss Promotes a Metabolic Switch in A549 Non–Small Cell Lung Cancer Cell Spheroids Honeder, Sophie

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5 Affinity Proteomics and Deglycoproteomics Uncover Novel EDEM2 Endogenous Substrates and an Integrative ERAD Network Munteanu, Cristian V.A.

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6 Age-Associated Proteomic Signatures and Potential Clinically Actionable Targets of Colorectal Cancer Gong, Yanqiu

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7 Allele-Specific Thresholds of Eluted Ligands for T-Cell Epitope Prediction Reardon, Brian

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8 AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization Willems, Sander

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9 A New Parallel High-Pressure Packing System Enables Rapid Multiplexed Production of Capillary Columns Müller-Reif, Johannes B.

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10 An Integrated Transcriptomics and Proteomics Analysis Implicates lncRNA MALAT1 in the Regulation of Lipid Metabolism Wang, Hao

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11 An Introduction to Advanced Targeted Acquisition Methods van Bentum, Mirjam

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12 Antibody Binding Epitope Mapping (AbMap) of Hundred Antibodies in a Single Run Qi, Huan

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13 A Potential Role for the Gsdf–eEF1α Complex in Inhibiting Germ Cell Proliferation: A Protein-Interaction Analysis in Medaka (Oryzias latipes) From a Proteomics Perspective Zhang, Xinting

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14 A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry–Based Glycoproteomics Riley, Nicholas M.

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15 A Proteomic Approach to Understand the Clinical Significance of Acute Myeloid Leukemia–Derived Extracellular Vesicles Reflecting Essential Characteristics of Leukemia Kang, Ka-Won

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16 A Proteomics-Based Assessment of Inflammation Signatures in Endotoxemia Burnap, Sean A.

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17 A Proteomic Study on the Membrane Protein Fraction of T Cells Confirms High Substrate Selectivity for the ER Translocation Inhibitor Cyclotriazadisulfonamide Pauwels, Eva

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18 A Reductionist Approach Using Primary and Metastatic Cell–Derived Extracellular Vesicles Reveals Hub Proteins Associated with Oral Cancer Prognosis Busso-Lopes, Ariane Fidelis

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19 Are There Indeed Spliced Peptides in the Immunopeptidome? Admon, Arie

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20 Asia-Oceania HUPO: Past, Present, and Future Ishihama, Yasushi

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21 Assessing the Preanalytical Variability of Plasma and Cerebrospinal Fluid Processing and Its Effects on Inflammation-Related Protein Biomarkers Huang, Jesse

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22 A Systematic Survey of the Light/Dark-dependent Protein Degradation Events in a Model Cyanobacterium Chen, Weiyang

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23 A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos Rosenthal, Shimon M.

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24 A Universal Peptide Matrix Interactomics Approach to Disclose Motif-Dependent Protein Binding Ramberger, Evelyn

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25 Automating UbiFast for High-throughput and Multiplexed Ubiquitin Enrichment Rivera, Keith D.

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26 Blockade of High-Fat Diet Proteomic Phenotypes Using Exercise as Prevention or Treatment Martinez-Huenchullan, Sergio F.

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27 Calculating Glycoprotein Similarities From Mass Spectrometric Data Hackett, William E.

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28 Calculating Sample Size Requirements for Temporal Dynamics in Single-Cell Proteomics Boekweg, Hannah

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29 Carboxylate-Modified Magnetic Bead (CMMB)-Based Isopropanol Gradient Peptide Fractionation (CIF) Enables Rapid and Robust Off-Line Peptide Mixture Fractionation in Bottom-Up Proteomics Deng, Weixian

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30 Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host–Pathogen Complexes Kaake, Robyn M.

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31 Characterization of R-Loop–Interacting Proteins in Embryonic Stem Cells Reveals Roles in rRNA Processing and Gene Expression Wu, Tong

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32 Chromatin Proteomics to Study Epigenetics — Challenges and Opportunities van Mierlo, Guido

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33 CIITA-Transduced Glioblastoma Cells Uncover a Rich Repertoire of Clinically Relevant Tumor-Associated HLA-II Antigens Forlani, Greta

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34 Commentary: Are There Indeed Spliced Peptides in the Immunopeptidome? Mishto, Michele

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35 Comparative Host Interactomes of the SARS-CoV-2 Nonstructural Protein 3 and Human Coronavirus Homologs Almasy, Katherine M.

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36 CoolTip: Low-Temperature Solid-Phase Extraction Microcolumn for Capturing Hydrophilic Peptides and Phosphopeptides Ogata, Kosuke

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37 Cover
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38 Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future Bandeira, Nuno

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39 Decellularization Enables Characterization and Functional Analysis of Extracellular Matrix in Planarian Regeneration Sonpho, Ekasit

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40 Decoding Post-Translational Modification Crosstalk With Proteomics Leutert, Mario

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41 DeepHistoClass: A Novel Strategy for Confident Classification of Immunohistochemistry Images Using Deep Learning Ghoshal, Biraja

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42 Deep-Learning-Derived Evaluation Metrics Enable Effective Benchmarking of Computational Tools for Phosphopeptide Identification Jiang, Wen

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43 Deeply Mining a Universe of Peptides Encoded by Long Noncoding RNAs Zhang, Qing

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44 Developments in Mass Spectrometry for Glycosaminoglycan Analysis: A Review Pepi, Lauren E.

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45 Domain Mapping of Chondroitin/Dermatan Sulfate Glycosaminoglycans Enables Structural Characterization of Proteoglycans Persson, Andrea

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46 Dynamic Changes to the Skeletal Muscle Proteome and Ubiquitinome Induced by the E3 Ligase, ASB2β Goodman, Craig A.

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47 Enabling Photoactivated Cross-Linking Mass Spectrometric Analysis of Protein Complexes by Novel MS-Cleavable Cross-Linkers Gutierrez, Craig

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48 Ethical Principles, Constraints, and Opportunities in Clinical Proteomics Mann, Sebastian Porsdam

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49 Evaluation and Refinement of Sample Preparation Methods for Extracellular Matrix Proteome Coverage McCabe, Maxwell C.

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50 Feasibility of Phosphoproteomics on Leftover Samples After RNA Extraction With Guanidinium Thiocyanate Rolfs, Frank

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51 Feature Selection Methods for Protein Biomarker Discovery from Proteomics or Multiomics Data Shi, Zhiao

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52 GAGrank: Software for Glycosaminoglycan Sequence Ranking Using a Bipartite Graph Model Hogan, John D.

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53 Global Insights Into Lysine Acylomes Reveal Crosstalk Between Lysine Acetylation and Succinylation in Streptomyces coelicolor Metabolic Pathways Yang, Yujiao

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54 Global Lysine Acetylation and 2-Hydroxyisobutyrylation Profiling Reveals the Metabolism Conversion Mechanism in Giardia lamblia Zhu, Wenhe

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55 Glycomics, Glycoproteomics, and Glycogenomics: An Inter-Taxa Evolutionary Perspective West, Christopher M.

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56 Glycoproteomics: Making the Study of the Most Structurally Diverse and Most Abundant Post-Translational Modifications More Accessible to the Scientific Community Hart, Gerald W.

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57 High-Throughput and Site-Specific N-Glycosylation Analysis of Human Alpha-1-Acid Glycoprotein Offers a Great Potential for New Biomarker Discovery Keser, Toma

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58 HLA Class II Presentation Is Specifically Altered at Elevated Temperatures in the B-Lymphoblastic Cell Line JY Demmers, Laura C.

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59 Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs Niinae, Tomoya

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60 Identification of Novel Serological Autoantibodies in Takayasu Arteritis Patients Using HuProt Arrays Wen, Xiaoting

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61 Identification of SUMO Targets Associated With the Pluripotent State in Human Stem Cells Mojsa, Barbara

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62 Imaging Mass Spectrometry and Lectin Analysis of N-Linked Glycans in Carbohydrate Antigen–Defined Pancreatic Cancer Tissues McDowell, Colin T.

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63 Immunopeptidogenomics: Harnessing RNA-Seq to Illuminate the Dark Immunopeptidome Scull, Katherine E.

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64 IMProv: A Resource for Cross-link-Driven Structure Modeling that Accommodates Protein Dynamics Ziemianowicz, Daniel S.

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65 Increased Wheat Protein Content via Introgression of an HMW Glutenin Selectively Reshapes the Grain Proteome Cao, Hui

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66 In-Depth Characterization of the Staphylococcus aureus Phosphoproteome Reveals New Targets of Stk1 Prust, Nadine

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67 In-depth Site-specific Analysis of N-glycoproteome in Human Cerebrospinal Fluid and Glycosylation Landscape Changes in Alzheimer's Disease Chen, Zhengwei

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68 Integrated Glycoproteomics Identifies a Role of N-Glycosylation and Galectin-1 on Myogenesis and Muscle Development Blazev, Ronnie

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69 Integrated Redox Proteomic Analysis Highlights New Mechanisms of Sensitivity to Silver Nanoparticles Holmila, Reetta

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70 Integrated Systems Analysis of the Murine and Human Pancreatic Cancer Glycomes Reveals a Tumor-Promoting Role for ST6GAL1 Kurz, Emma

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71 Integrative Proteomic and Metabolomic Analysis Reveals Metabolic Phenotype in Mice With Cardiac-Specific Deletion of Natriuretic Peptide Receptor A Chang, Pan

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72 Interspecies Differences in Proteome Turnover Kinetics Are Correlated With Life Spans and Energetic Demands Swovick, Kyle

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73 IonQuant Enables Accurate and Sensitive Label-Free Quantification With FDR-Controlled Match-Between-Runs Yu, Fengchao

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74 Isolation of Acetylated and Unmodified Protein N-Terminal Peptides by Strong Cation Exchange Chromatographic Separation of TrypN-Digested Peptides Chang, Chih-Hsiang

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75 Mapping Isoform Abundance and Interactome of the Endogenous TMPRSS2-ERG Fusion Protein by Orthogonal Immunoprecipitation–Mass Spectrometry Assays Fu, Zhiqiang

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76 Metabolic Perturbation Associated With COVID-19 Disease Severity and SARS-CoV-2 Replication Krishnan, Shuba

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77 Meta-heterogeneity: Evaluating and Describing the Diversity in Glycosylation Between Sites on the Same Glycoprotein Čaval, Tomislav

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78 Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites Maynard, Jason C.

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79 MHC Phosphopeptides: Promising Targets for Immunotherapy of Cancer and Other Chronic Diseases Mahoney, Keira E.

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80 MS-Based HLA-II Peptidomics Combined With Multiomics Will Aid the Development of Future Immunotherapies Taylor, Hannah B.

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81 Multisample Mass Spectrometry-Based Approach for Discovering Injury Markers in Chronic Kidney Disease Kim, Ji Eun

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82 Neuroproteomics of the Synapse: Subcellular Quantification of Protein Networks and Signaling Dynamics van Gelder, Charlotte A.G.H.

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83 New Proteomic Signatures to Distinguish Between Zika and Dengue Infections Allgoewer, Kristina

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84 N-Glycomic Signature of Stage II Colorectal Cancer and Its Association With the Tumor Microenvironment Boyaval, Fanny

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85 Normothermic Ex-vivo Kidney Perfusion in a Porcine Auto-Transplantation Model Preserves the Expression of Key Mitochondrial Proteins: An Unbiased Proteomics Analysis McEvoy, Caitriona M.

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86 Novel Antibodies for the Simple and Efficient Enrichment of Native O-GlcNAc Modified Peptides Burt, Rajan A.

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87 Nuclear Phosphatidylinositol 3,4,5-Trisphosphate Interactome Uncovers an Enrichment in Nucleolar Proteins Mazloumi Gavgani, Fatemeh

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88 On the Robustness of Graph-Based Clustering to Random Network Alterations Stacey, R. Greg

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89 Optimized Liquid and Gas Phase Fractionation Increases HLA-Peptidome Coverage for Primary Cell and Tissue Samples Klaeger, Susan

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90 Oxidative Modifications Switch Modulatory Activities of Urinary Proteins From Inhibiting to Promoting Calcium Oxalate Crystallization, Growth, and Aggregation Chaiyarit, Sakdithep

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91 Peak Filtering, Peak Annotation, and Wildcard Search for Glycoproteomics Roushan, Abhishek

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92 Peptidomics-Driven Strategy Reveals Peptides and Predicted Proteases Associated With Oral Cancer Prognosis Neves, Leandro Xavier

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93 Pitfalls in HLA Ligandomics—How to Catch a Li(e)gand Fritsche, Jens

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94 Plasma Proteomes Can Be Reidentifiable and Potentially Contain Personally Sensitive and Incidental Findings Geyer, Philipp E.

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95 Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation Pyke, Rachel Marty

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96 Prediction and Validation of Mouse Meiosis-Essential Genes Based on Spermatogenesis Proteome Dynamics Fang, Kailun

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97 Pronounced Postmating Response in the Drosophila Female Reproductive Tract Fluid Proteome McDonough-Goldstein, Caitlin E.

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98 Protein Modification Characteristics of the Malaria Parasite Plasmodium falciparum and the Infected Erythrocytes Wang, Jianhua

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99 Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling Silbern, Ivan

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100 Proteogenomic Analysis Unveils the HLA Class I-Presented Immunopeptidome in Melanoma and EGFR-Mutant Lung Adenocarcinoma Qi, Yue A.

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101 Proteogenomic Assessment of Intraspecific Venom Variability: Molecular Adaptations in the Venom Arsenal of Conus purpurascens Grandal, Meghan

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102 Proteogenomic Characterization of the Pathogenic Fungus Aspergillus flavus Reveals Novel Genes Involved in Aflatoxin Production Yang, Mingkun

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103 Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition Schmitt, Marisa

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104 Proteome Analysis Reveals a Significant Host-Specific Response in Rhizobium leguminosarum bv. viciae Endosymbiotic Cells Durán, David

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105 Proteome Characterization of Glaucoma Aqueous Humor Liu, Xiaoyan

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106 Proteome Landscape of Epithelial-to-Mesenchymal Transition (EMT) of Retinal Pigment Epithelium Shares Commonalities With Malignancy-Associated EMT Sripathi, Srinivasa R.

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107 Proteome Profiling of Recombinant DNase Therapy in Reducing NETs and Aiding Recovery in COVID-19 Patients Fisher, Jane

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108 Proteome Turnover in the Spotlight: Approaches, Applications, and Perspectives Ross, Alison Barbara

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109 Proteomic Analyses Identify Differentially Expressed Proteins and Pathways Between Low-Risk and High-Risk Subtypes of Early-Stage Lung Adenocarcinoma and Their Prognostic Impacts Zhou, Juntuo

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110 Proteomic Analysis Uncovers Measles Virus Protein C Interaction With p65–iASPP Protein Complex Meignié, Alice

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111 Proteomic Dissection of the Impact of Environmental Exposures on Mouse Seminal Vesicle Function Skerrett-Byrne, David A.

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112 Proteomic Identification of Coxiella burnetii Effector Proteins Targeted to the Host Cell Mitochondria During Infection Fielden, Laura F.

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113 Proteomic Landscape of Exosomes Reveals the Functional Contributions of CD151 in Triple-Negative Breast Cancer Li, Sipeng

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114 Proteomic Portraits Reveal Evolutionarily Conserved and Divergent Responses to Spinal Cord Injury Skinnider, Michael A.

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115 Proteomic Profiling of Gastric Signet Ring Cell Carcinoma Tissues Reveals Characteristic Changes of the Complement Cascade Pathway Fan, Yang

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116 Proteomics-Based Insights Into the SARS-CoV-2–Mediated COVID-19 Pandemic: A Review of the First Year of Research Praissman, Jeremy L.

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117 Proteomic Signature of Host Response to SARS-CoV-2 Infection in the Nasopharynx Vanderboom, Patrick M.

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118 Proteomics, Lipidomics, Metabolomics, and 16S DNA Sequencing of Dental Plaque From Patients With Diabetes and Periodontal Disease Overmyer, Katherine A.

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119 Proximity-dependent Mapping of the Androgen Receptor Identifies Kruppel-like Factor 4 as a Functional Partner Vélot, Lauriane

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120 Proximity Extension Assay in Combination with Next-Generation Sequencing for High-throughput Proteome-wide Analysis Wik, Lotta

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121 PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results Geiszler, Daniel J.

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122 Quantifying Positional Isomers (QPI) by Top-Down Mass Spectrometry Brunner, Andrea M.

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123 Quantitative Consequences of Protein Carriers in Immunopeptidomics and Tyrosine Phosphorylation MS2 Analyses Stopfer, Lauren E.

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124 Quantitative Data-Independent Acquisition Glycoproteomics of Sparkling Wine Pegg, Cassandra L.

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125 Quantitative Proteomic and Metabolomic Profiling Reveals Altered Mitochondrial Metabolism and Folate Biosynthesis Pathways in the Aging Drosophila Eye Hall, Hana

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126 Quantitative Proteomics and Phosphoproteomics Support a Role for Mut9-Like Kinases in Multiple Metabolic and Signaling Pathways in Arabidopsis Wilson, Margaret E.

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127 Quantitative Proteomics Reveals Association of Neuron Projection Development Genes ARF4, KIF5B, and RAB8A With Hirschsprung Disease Zhang, Qin

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128 Quantitative Proteomics Reveals that the OGT Interactome Is Remodeled in Response to Oxidative Stress Martinez, Marissa

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129 Quantitative Ubiquitylome Analysis Reveals the Specificity of RNF111/Arkadia E3 Ubiquitin Ligase for its Degradative Substrates SKI and SKIL/SnoN in TGF-β Signaling Pathway Laigle, Victor

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130 Recent Advances in Analytical Approaches for Glycan and Glycopeptide Quantitation Delafield, Daniel G.

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131 Recent Advances in Software Tools for More Generic and Precise Intact Glycopeptide Analysis Cao, Weiqian

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132 Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years Omenn, Gilbert S.

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133 Region-Specific Cell Membrane N-Glycome of Functional Mouse Brain Areas Revealed by nanoLC-MS Analysis Barboza, Mariana

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134 Revealing the Dynamic Allosteric Changes Required for Formation of the Cysteine Synthase Complex by Hydrogen-Deuterium Exchange MS Rosa, Brenda

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135 Reverse Phase Protein Array Reveals Correlation of Retinoic Acid Metabolism With Cardiomyopathy in Friedreich's Ataxia Napierala, Jill S.

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136 SCASP: A Simple and Robust SDS-Aided Sample Preparation Method for Proteomic Research Gan, Guohong

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137 Secretome and Comparative Proteomics of Yersinia pestis Identify Two Novel E3 Ubiquitin Ligases That Contribute to Plague Virulence Cao, Shiyang

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138 Sensitive and Quantitative Detection of MHC-I Displayed Neoepitopes Using a Semiautomated Workflow and TOMAHAQ Mass Spectrometry Pollock, Samuel B.

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139 Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction Pak, HuiSong

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140 Separation and Identification of Permethylated Glycan Isomers by Reversed Phase NanoLC-NSI-MSn Kurz, Simone

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141 Site-specific N-glycosylation Characterization of Recombinant SARS-CoV-2 Spike Proteins Zhang, Yong

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142 Spectral Prediction Features as a Solution for the Search Space Size Problem in Proteogenomics Verbruggen, Steven

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143 Stable Isotope Labeling of Amino Acids in Flies (SILAF) Reveals Differential Phosphorylation of Mitochondrial Proteins Upon Loss of OXPHOS Subunits Rosenberger, Florian A.

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144 Structural Investigations of Human A2M Identify a Hollow Native Conformation That Underlies Its Distinctive Protease-Trapping Mechanism Harwood, Seandean Lykke

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145 Sulfation of O-glycans on Mucin-type Proteins From Serous Ovarian Epithelial Tumors Thomsson, Kristina A.

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146 Systematic Identification of Plasmodium Falciparum Sporozoite Membrane Protein Interactions Reveals an Essential Role for the p24 Complex in Host Infection Knöckel, Julia

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147 Systematic Proteome and Lysine Succinylome Analysis Reveals Enhanced Cell Migration by Hyposuccinylation in Esophageal Squamous Cell Carcinoma Guo, Zhenchang

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148 The Choice of Search Engine Affects Sequencing Depth and HLA Class I Allele-Specific Peptide Repertoires Parker, Robert

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149 The C-Mannosylome of Human Induced Pluripotent Stem Cells Implies a Role for ADAMTS16 C-Mannosylation in Eye Development Cirksena, Karsten

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150 The Complexity and Dynamics of the Tissue Glycoproteome Associated With Prostate Cancer Progression Kawahara, Rebeca

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151 The Effect of Interferons on Presentation of Defective Ribosomal Products as HLA Peptides Komov, Liran

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152 The Expression of NTAL and Its Protein Interactors Is Associated With Clinical Outcomes in Acute Myeloid Leukemia Thomé, Carolina Hassibe

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153 The Insufficient Activation of RIG-I–Like Signaling Pathway Contributes to Highly Efficient Replication of Porcine Picornaviruses in IBRS-2 Cells Zhang, Xiangle

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154 The Mechanism of NEDD8 Activation of CUL5 Ubiquitin E3 Ligases Lumpkin, Ryan J.

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155 The Peptide Vaccine of the Future Nelde, Annika

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156 Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism Leijten, Niels M.

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157 The Role of Data-Independent Acquisition for Glycoproteomics Ye, Zilu

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158 Thyroglobulin Interactome Profiling Defines Altered Proteostasis Topology Associated With Thyroid Dyshormonogenesis Wright, Madison T.

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159 TMEM67, TMEM237, and Embigin in Complex With Monocarboxylate Transporter MCT1 Are Unique Components of the Photoreceptor Outer Segment Plasma Membrane Skiba, Nikolai P.

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160 Transcriptome and Secretome Analysis of Intra-Mammalian Life-Stages of Calicophoron daubneyi Reveals Adaptation to a Unique Host Environment Huson, Kathryn M.

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161 Trapped Ion Mobility Spectrometry and Parallel Accumulation–Serial Fragmentation in Proteomics Meier, Florian

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162 Trimethylacetic Anhydride–Based Derivatization Facilitates Quantification of Histone Marks at the MS1 Level Kuchaříková, Hana

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163 Unbiased Proteomic and Phosphoproteomic Analysis Identifies Response Signatures and Novel Susceptibilities After Combined MEK and mTOR Inhibition in BRAFV600E Mutant Glioma Maxwell, Micah J.

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164 Uncovering the Depths of the Human Proteome: Antibody-based Technologies for Ultrasensitive Multiplexed Protein Detection and Quantification Ren, Annie H.

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165 Unraveling the MAX2 Protein Network in Arabidopsis thaliana: Identification of the Protein Phosphatase PAPP5 as a Novel MAX2 Interactor Struk, Sylwia

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166 Working Toward Reducing Bias in Peer Review Rye, Kerry-Anne

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                             166 results found
 
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