| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
About overyielding with mixed cultures in batch processes
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Harmand, J.
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52 |
26 |
p. 163-168
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artikel
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| 2 |
A Comparison of Methods for Quantifying Prediction Uncertainty in Systems Biology ⁎ ⁎ This research has received funding from the European Unions Horizon 2020 research and innovation program under grant agreement No 686282 (CanPathPro) and the German Ministry of Education and Research (BMBF) under the grant agreement No 01ZX1310B (SYS-Stomach) and No 01ZX1705A (INCOME).
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Villaverde, Alejandro F.
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52 |
26 |
p. 45-51
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artikel
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| 3 |
A low-cost, open-source Turbidostat design for in-vivo control experiments in Synthetic Biology
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Guarino, Agostino
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52 |
26 |
p. 244-248
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artikel
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| 4 |
A method for design of expression tracking controllers for gene regulatory networks
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Mori, Yoshihiro
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52 |
26 |
p. 135-142
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artikel
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| 5 |
A multifactorial evaluation framework for gene regulatory network reconstruction ⁎ ⁎ AA and JM are supported by University of Luxembourg internal researh projects PPPD (both) and OptBioSys (AA). Code is available at https://github.com/Lmombaerts/Multifactorial
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Mombaerts, Laurent
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52 |
26 |
p. 262-268
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artikel
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| 6 |
A Physiologically Structured Equation to Consider Quota Heterogeneity in the Droop Model
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Mairet, Francis
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52 |
26 |
p. 275-280
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artikel
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| 7 |
Bayesian model selection in synthetic biology: factor levels and observation functions ⁎ ⁎ This project is partially supported by EC funding 766840-COSY-BIO, an EPSRC Innovation Fellowship (EP/S001921/1) and an EPSRC New Investigator Award (EP/R035350/1); L.B. is supported by EPSRC funding EP/P017134/1-CONDSYC; EBC acknowledges funding from Spanish MINECO, grant refs. AGL2015-67504-C3-2-R and RTI2018-093744-B-C33.
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Bandiera, L.
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52 |
26 |
p. 24-31
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artikel
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| 8 |
Biomolecular signal tracker with fast time response. ⁎ ⁎ This work was partially supported by MINECO/AEI, EU DPI2017-82896-C2-1-R., by ANPCyT Arg PICT2017-3211 and by UNLP Arg
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De Battista, H.
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52 |
26 |
p. 1-6
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artikel
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| 9 |
Challenges in the calibration of large-scale ordinary differential equation models
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Kapfer, Eva-Maria
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52 |
26 |
p. 58-64
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artikel
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| 10 |
Contents
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52 |
26 |
p. i-vi
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artikel
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| 11 |
Dirac mixture distributions for the approximation of mixed effects models ⁎ ⁎ We acknowledge financial support by the China Scholarship Council (201706060200) and the German Ministry for Education and Research (BMBF) in the FitMultiCell project (grant number 031L0159A).
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Wang, Dantong
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52 |
26 |
p. 200-206
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artikel
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| 12 |
DISCOPOLIS: an algorithm for uniform sampling of metabolic flux distributions via iterative sequences of linear programs
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Bogaerts, Philippe
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52 |
26 |
p. 269-274
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artikel
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| 13 |
Disturbance response analysis of cell-to-cell communication systems based on spatial frequency decomposition ⁎ ⁎ This work was supported in part by the Okawa Foundation Research Grant under grant number 16-10 and JSPS KAKENHI Grant Number JP18H01464.
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Kotsuka, Taishi
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52 |
26 |
p. 65-69
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artikel
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| 14 |
Efficient computation of steady states in large-scale ODE models of biochemical reaction networks
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Terje Lines, Glenn
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52 |
26 |
p. 32-37
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artikel
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| 15 |
Efficient learning in metabolic pathway designs through optimal assembling ⁎ ⁎ This project has received funding from the UK BBSRC under Grant BB/M017702/1, “Centre for Synthetic Biology of Fine and Specialty Chemicals”, and Grant BB/R506497/1, “Flexible Talent Mobility”, and from the European Union’s Horizon 2020 research and innovation programme under Grant Agreement No. 814408, “ShikiFactory100”. The authors acknowledge the use in this study of the Computational Shared Facility of the University of Manchester.
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Carbonell, Pablo
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52 |
26 |
p. 7-12
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artikel
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| 16 |
Evaluating the performance of a post-translational dynamic metabolic control system
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Kadam, Kaustubh
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52 |
26 |
p. 225-230
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artikel
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| 17 |
Exploiting Ultrasensitivity for Biomolecular Implementation of a Control System without Error Detection
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Montefusco, Francesco
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52 |
26 |
p. 149-155
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artikel
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| 18 |
Extremum-Seeking for micro-algae biomass productivity maximization: an experimental validation
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Feudjio Letchindjio, Christian G.
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52 |
26 |
p. 281-286
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artikel
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| 19 |
FBA-based simulator of Saccharomyces cerevisiae fed-batch cultures involving an internal unbalanced metabolite
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Plaza, J.
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52 |
26 |
p. 169-174
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artikel
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| 20 |
Fluorescence calibration and color equivalence for quantitative synthetic biology. ⁎ ⁎ This work was partially supported by MINECO/AEI, EU DPI2017-82896-C2-1-R.
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Vignoni, A.
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52 |
26 |
p. 129-134
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artikel
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| 21 |
Global stabilization of a genetic positive feedback loop via the design of a synthetic auto-repression ⁎ ⁎ This work was supported by Region PACA and by the French Government (National Research Agency, ANR) through the ”Investments for the Future” LABEX SIGNALIFE: program reference ANR-11-LABX-0028-01.
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Chambon, Lucie
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52 |
26 |
p. 143-148
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artikel
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| 22 |
Identification of Heterogeneous Parameters in an Intracellular Reaction Network from Population Snapshot Measurements through Sensitivity Analysis and Neural Network
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Lee, Dongheon
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52 |
26 |
p. 107-112
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artikel
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| 23 |
Impact of changing cell-cell communication network in models of epithelial pattern formation ⁎ ⁎ This work was supported by national funds through Fundação para a Ciencia e a Tecnologia (FCT) with references UID/CEC/50021/2019 (INESC-ID multi-annual funding) and projects PTDC/BEX-BCB/0772/2014 and PTDC/EEI-CTP/2914/2014
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Varela, Pedro L.
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52 |
26 |
p. 38-44
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artikel
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| 24 |
Individual-based modeling explains effects of TRAIL treatment in cancer cells. ⁎ ⁎ The authors would like to thank the German Research Foundation (DFG) for financial support of the project within the Cluster of Excellence in Simulation Technology (EXC 310/2) at the University of Stuttgart.
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Imig, Dirke
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52 |
26 |
p. 207-212
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artikel
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| 25 |
Kinetic Modeling of Coagulation and Fibrinolysis ⁎ ⁎ This study was supported by an award from the US Army and Systems Biology of Trauma Induced Coagulopathy (W911NF-10-1-0376) to J.V. for the support of R.L. and awards to KBZ from the US Army (Systems Biology of Trauma Induced Coagulopathy, Grant W911NF-10-1-0376) and the Office of Naval Research (Complex Systems Approaches to Characterizing Trauma Induced Coagulopathy, Contract W911QY15C0027).
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LeCover, Rachel
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52 |
26 |
p. 94-100
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artikel
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| 26 |
Leveraging Resource Competition for Part Characterization in Cell-Free Extracts ⁎ ⁎ This work has not been supported by any organization or funding agency.
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Gyorgy, Andras
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52 |
26 |
p. 17-23
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artikel
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| 27 |
Literature and data-driven based inference of signalling interactions using time-course data
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Gjerga, Enio
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52 |
26 |
p. 52-57
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artikel
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| 28 |
Model-based Analysis and Optimisation of a Continuous Corynebacterium glutamicum Bioprocess Utilizing Lignocellulosic Waste
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Sinner, Peter
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52 |
26 |
p. 181-186
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artikel
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| 29 |
Modeling bounded random fluctuations in biological systems: application to the chemostat model with two species
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Caraballo, Tomás
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52 |
26 |
p. 187-192
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artikel
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| 30 |
Model mismatch in multi-objective optimisation and preservation of trade-off order. ⁎ ⁎ This work is partially supported by the National Council of Scientific and Technological Development of Brazil (CNPq) through the grants PQ2/304066/2016-8, UNI/437105/2018-0 and by the Spanish Government through grant MINECO/AEI,EU DPI2017-82896-C2-1-R
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Reynoso-Meza, Gilberto
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52 |
26 |
p. 249-254
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artikel
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| 31 |
Multiobjective optimization of gene circuits for metabolic engineering ⁎ ⁎ IOM and JRB acknowledge funding from the Spanish Ministry of Science, Innovation and Universities and the European Union FEDER under grant SYNBIOCONTROL (DPI2017-82896-C2-2-R).
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Otero-Muras, Irene
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52 |
26 |
p. 13-16
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artikel
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| 32 |
Optimal Experimental Design for a Bistable Gene Regulatory Network
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Braniff, Nathan
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52 |
26 |
p. 255-261
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artikel
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| 33 |
Optimization of Microalgae Selection: Highlighting turnpike features
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Djema, Walid
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52 |
26 |
p. 293-297
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artikel
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| 34 |
Period - control in a coupled system of two genetic oscillators for synthetic biology ⁎ ⁎ The authors were partly supported by the French national agency for research through project ICycle ANR-16-CE33-0016-01
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Firippi, Eleni
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52 |
26 |
p. 70-75
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artikel
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| 35 |
Quantifying the potential of microalgae to remove nutrients from wastewater ⁎ ⁎ This work was supported by the CONICYT doctoral grant (Carlos Martínez), by the Engineering 2030 project of Federico Santa María Technical University (Luis Plaza), and by the INRIA Project Lab Algae in silico.
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Martínez, Carlos
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52 |
26 |
p. 287-292
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artikel
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| 36 |
Reference Conditioning Anti-windup for the Biomolecular Antithetic Controller ⁎ ⁎ This work was partially supported by MINECO/AEI, EU DPI2017-82896-C2-1-R., by ANPCyT Arg PICT2017-3211 and by UNLP Arg
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Nóbel, F.
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52 |
26 |
p. 156-162
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artikel
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| 37 |
Robust Optimal Control-based Design of Combined Chemo- and Immunotherapy Delivery Profiles
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Moussa, Kaouther
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52 |
26 |
p. 76-81
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artikel
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| 38 |
SEML: A Simplified English Modeling Language for Constructing Biological Models in Julia ⁎ ⁎ We acknowledged the financial support to JV from the departmental funding of Robert Frederick Smith School of Chemical and Biomolecular Engineering, Cornell University.
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Zhang, Zhiping
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52 |
26 |
p. 121-128
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artikel
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| 39 |
Simple Nonlinear Models for Glucose-Insulin Dynamics: Application to Intraperitoneal Insulin Infusion ⁎ ⁎ This work was carried out during the tenure of an ERCIM ‘Alain Bensoussan’ Fellowship Programme. This research is also funded by The Norwegian Research Council (Project no.: 248872/O70), Central Norway Regional Health Authority and Johan Selmer Kvanes Endowment for Research and Combating of Diabetes.
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Lopez-Zazueta, Claudia
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52 |
26 |
p. 219-224
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artikel
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| 40 |
Simulation of Intracellular Calcium Release in Heart Cells ⁎ ⁎ Partially supported by an Australian Government Research Training Program Scholarship.
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Vysma, Morris
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52 |
26 |
p. 238-243
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artikel
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| 41 |
Strain-Specific Immune Response to Influenza Virus Infection
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Ackerman, Emily E.
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52 |
26 |
p. 101-106
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artikel
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| 42 |
Targeted conversion of protein and glucose waste streams to volatile fatty acids by metabolic models
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Regueira, A.
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52 |
26 |
p. 175-180
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artikel
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| 43 |
TFEB dynamical model reveals a novel feedback loop biological mechanism
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Napolitano, Sara
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52 |
26 |
p. 213-218
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artikel
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| 44 |
The development of a fed-batch Corynebacterium glutamicum fermentation model
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Lira-Parada, Pedro A.
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52 |
26 |
p. 231-237
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artikel
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| 45 |
Towards a Model-Based Experimental Design of the Maturation Process of Biohybrid Heart Valves ⁎ ⁎ This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 403043858.
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Voß, Kirsten
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52 |
26 |
p. 113-120
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artikel
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| 46 |
Towards automated control of embryonic stem cell pluripotency
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Khazim, Mahmoud
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52 |
26 |
p. 82-87
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artikel
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| 47 |
Towards the construction of GSMN-based community model for an oral biofilm
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De Winter, Kjerstin
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52 |
26 |
p. 193-199
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artikel
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| 48 |
Visual-vestibular compensation in balance recovery: A transfer function model-based analysis
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Voda, Alina
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52 |
26 |
p. 88-93
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artikel
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