| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
Adjusting Noise in the Genetic Toggle Switch through Stochastic Circuit Design
|
Hortsch, Sayuri K.
|
|
2018
|
51 |
19 |
p. 68-71
|
artikel
|
| 2 |
A Dynamic Model of Cystic Fibrosis Airway Epithelium Electrophysiology ⁎ ⁎ The work presented here was supported by the NIH National Heart, Lung, and Blood Institute grants R01 HL108929-01 and U01 HL131046-01.
|
Castillo, Florencio Serrano
|
|
2018
|
51 |
19 |
p. 94-97
|
artikel
|
| 3 |
A Model-Based Investigation of Cytokine Storm for T-Cell Therapy
|
Hopkins, Brooks
|
|
2018
|
51 |
19 |
p. 76-79
|
artikel
|
| 4 |
A multiscale model of influenza A virus replication covering highly different infection conditions in cell cultures
|
Rüdiger, D.
|
|
2018
|
51 |
19 |
p. 32-33
|
artikel
|
| 5 |
A Novel Technique for Model Reduction of Biochemical Reaction Networks
|
Gasparyan, Manvel
|
|
2018
|
51 |
19 |
p. 28-31
|
artikel
|
| 6 |
ATPase binding and consequent disassembly of the type VI secretion system in Vibrio cholerae: a dynamic model
|
Smith-Roberge, Julien
|
|
2018
|
51 |
19 |
p. 82-83
|
artikel
|
| 7 |
Characterization of Blood Volume Space and Mitochondrial Activity in Functional Renal Cells ⁎ ⁎ Financial support for this work is provided by the US Department of Education Graduate Assistance in Areas of National Need fellowship program (P200A120195), the National Institute of Health (1K12HL109068-02, 1K08GM117310-01A1), the Vascular Medicine Institute, the Hemophilia Center of Western Pennsylvania, the Institute for Transfusion Medicine, and by the National Science Foundation and PITT STRIVE under Grant No. 1434012.
|
McCarroll, Matthew J.
|
|
2018
|
51 |
19 |
p. 118-119
|
artikel
|
| 8 |
Comparator-based gene regulatory network designs for control of expression
|
Kazemi, J.
|
|
2018
|
51 |
19 |
p. 38-41
|
artikel
|
| 9 |
Contents
|
|
|
2018
|
51 |
19 |
p. i-vii
|
artikel
|
| 10 |
Coupled Model of Blood Volume and Activated Clotting Factor Concentration during Childbirth ⁎ ⁎ Financial support for this work is provided by the US Department of Education Graduate Assistance in Areas of National Need fellowship program (P200A150050) and the National Institutes of Health, National Heart, Lung, and Blood Institute (R21-HL-133891).
|
Pressly, Michelle A.
|
|
2018
|
51 |
19 |
p. 52-55
|
artikel
|
| 11 |
Critical Assessment of Parameter Estimation Methods in Models of Biological Oscillators ⁎ ⁎ This project has received funding from the European Unions Horizon 2020 research and innovation program under grant agreement 675585 (Marie Sklodowska-Curie ITN SyMBioSys). The authors JAP and LG are Marie Sklodowska-Curie Early Stage Researchers at IIM-CSIC (Spain) and PSE Ltd (UK) respectively.
|
Pitt, Jake Alan
|
|
2018
|
51 |
19 |
p. 72-75
|
artikel
|
| 12 |
Death patterns resulting from cell cycle-independent cell death. ⁎ ⁎ The authors thank the German Research Foundation (DFG) within the Cluster of Excellence in Simulation Technology (EXC 310/2) at the University of Stuttgart.
|
Imig, Dirke
|
|
2018
|
51 |
19 |
p. 90-93
|
artikel
|
| 13 |
Dynamical resource allocation models for bioreactor optimization
|
Jeanne, Guillaume
|
|
2018
|
51 |
19 |
p. 20-23
|
artikel
|
| 14 |
Dynamic Modelling of Mitochondrial Metabolism ⁎ ⁎ This research has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 675585 (Marie-Curie ITN ”SyMBioSys”).
|
Bolaji, Olufemi
|
|
2018
|
51 |
19 |
p. 126-127
|
artikel
|
| 15 |
Dynamic Transcriptomic Data Analysis by Integrating Data-driven and Model-guided Approaches
|
Hilliard, Matthew
|
|
2018
|
51 |
19 |
p. 104-107
|
artikel
|
| 16 |
Efficient Biochemical Pathway Prediction Using Simulated Annealing
|
Xu, Zhiqing
|
|
2018
|
51 |
19 |
p. 56-57
|
artikel
|
| 17 |
Efficient simulation of stochastic gene regulatory networks ⁎ ⁎ This work has been supported by Spanish MINECO grants AGL2015-67504-C3-2-R, PIE201230E0M2 (AAA), BES-2013-063112 (MP), MTM2016-76497-R, MTM2013-47800-C2-1-P (CV) and MINECO and European Regional Development Fund DPI2014-55276-C5-2-R (IOM).
|
Pájaro, Manuel
|
|
2018
|
51 |
19 |
p. 84-85
|
artikel
|
| 18 |
Ensemble control for cell cycle synchronization of heterogeneous cell populations ⁎ ⁎ The authors thank the German Research Foundation (DFG) for financial support of the project under grant number AL316/14-1 and within the Cluster of Excellence in Simulation Technology (EXC 310/2) at the University of Stuttgart.
|
Kuritz, Karsten
|
|
2018
|
51 |
19 |
p. 44-47
|
artikel
|
| 19 |
Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology
|
Schälte, Yannik
|
|
2018
|
51 |
19 |
p. 98-101
|
artikel
|
| 20 |
Examining Dynamic Emergent Properties of the DNA Sensing Pathway
|
Gregg, Robert W.
|
|
2018
|
51 |
19 |
p. 112-113
|
artikel
|
| 21 |
Host-circuit interactions explain unexpected behavior of a gene circuit. ⁎ ⁎ This work was partially supported by MINECO/AEI, EU DPI2014-55276-C5-1-R and DPI2017-82896-C2-1-R.Y.B. thanks grant FPI/2013-3242 of Universitat Politecnica de Valencia. D.O. was partly supported by the Human Frontier Science Program through a Young Investigator Grant (RGY0076-2015). We are grateful to MSc. Liliana Oleas who worked on this for her Master’s Thesis and to PhDs C. Baüerl, D. Provencio and P. Sanchez-Torres at the SB2CLab for their help in plasmid construction and getting experimental data.
|
Boada, Y.
|
|
2018
|
51 |
19 |
p. 86-89
|
artikel
|
| 22 |
Mapping the calcium signalsome during Drosophila wing development
|
Brodskiy, Pavel A.
|
|
2018
|
51 |
19 |
p. 108-109
|
artikel
|
| 23 |
Mathematical modeling as a tool to improve influenza vaccine production processes
|
Duvigneau, Stefanie
|
|
2018
|
51 |
19 |
p. 1-4
|
artikel
|
| 24 |
Mixed Integer Multiobjective Optimization Approaches for Systems and Synthetic Biology ⁎ ⁎ We acknowledge funding from the Spanish MINECO (and the European Regional Development Fund) project SYNBIOFACTORY (grant number DPI2014-55276-C5-2-R).
|
Otero-Muras, Irene
|
|
2018
|
51 |
19 |
p. 58-61
|
artikel
|
| 25 |
Modeling intercellular calcium dynamics in an epithelial organ using Dynamic Mode Decomposition ⁎ ⁎ The work in this paper was supported in part by NIH Grant R35GM124935 and NSF Awards CBET-1553826.
|
Torghabeh, Ramezan Paravi
|
|
2018
|
51 |
19 |
p. 120-123
|
artikel
|
| 26 |
Modeling the Adhesive Behavior of Platelets During Coagulation ⁎ ⁎ Financial support for this work is provided by the US Department of Education Graduate Assistance in Areas of National Need fellowship program (P200A120195, P200A150050).
|
Cala, Megan P.
|
|
2018
|
51 |
19 |
p. 114-115
|
artikel
|
| 27 |
Modelling the Central Carbon Metabolism of three Cancer Cells using 13C Data
|
Rainer, Roman
|
|
2018
|
51 |
19 |
p. 80-81
|
artikel
|
| 28 |
Model Predictive Control of a Fed-batch Bioreactor Based on Dynamic Metabolic-Genetic Network Models
|
Jabarivelisdeh, Banafsheh
|
|
2018
|
51 |
19 |
p. 34-37
|
artikel
|
| 29 |
Model Uncertainty Analysis for Metabolic Network Inference: A Case Study in Bayesian Model Averaging
|
Theorell, Axel
|
|
2018
|
51 |
19 |
p. 124-125
|
artikel
|
| 30 |
Multi-objective identification from fluorescence recovery after photobleaching experiments: Understanding morphogenetic regulation of epithelial polarity ⁎ ⁎ The research leading to these results has received funding from the Chair of Scientific Computing for Systems Biology, TU Dresden and from the Max Planck Institute for Molecular Cell Biology and Genetics. Alejandro Vignoni held an ELBE Postdoctoral Fellowship from CSBD.
|
Vignoni, A.
|
|
2018
|
51 |
19 |
p. 8-11
|
artikel
|
| 31 |
Multistability in a prion replication interconnected cell reaction network ⁎ ⁎ First author acknowledge the financial support from Red de Proteínas, Priones y Enfermedades Neurodegenerativas (PRyEND) http://www.pryend.org/ IOM Acknowledges funding from the Spanish MINECO (and the European Regional Development Fund) project SYNBIOFACTORY (grant number DPI2014-55276-C5-2-R).
|
Méndez-González, J.M.
|
|
2018
|
51 |
19 |
p. 62-63
|
artikel
|
| 32 |
NET works after all? Engineering robustness through diversity
|
Mondeel, Thierry D.G.A.
|
|
2018
|
51 |
19 |
p. 128-137
|
artikel
|
| 33 |
Numerical Modelling of C. elegans L1 Aggregation
|
Avery, Leon
|
|
2018
|
51 |
19 |
p. 12-15
|
artikel
|
| 34 |
One-Stage vs. Two-Stage Bioprocesses: Comparative Computational and Experimental Studies and Consequences for Strain Design
|
Klamt, Steffen
|
|
2018
|
51 |
19 |
p. 7
|
artikel
|
| 35 |
Optimal experimental design for characterizing gene expression: sample scheduling
|
Braniff, N.
|
|
2018
|
51 |
19 |
p. 48-51
|
artikel
|
| 36 |
Parameter Estimation by Picard-Iteration for Biochemical Networks with Noisy Data
|
Naber, Maike
|
|
2018
|
51 |
19 |
p. 64-67
|
artikel
|
| 37 |
Physiologically-Based Model of Fluid Absorption and Mucociliary Clearance in Cystic Fibrosis ⁎ ⁎ The work presented here was supported by the NIH National Heart, Lung and Blood Institute grant number U01 HL131046-01.
|
Shapiro, Monica E.
|
|
2018
|
51 |
19 |
p. 102-103
|
artikel
|
| 38 |
Predicting host immune cell dynamics using tissue gene expression
|
Wang, Muying
|
|
2018
|
51 |
19 |
p. 5-6
|
artikel
|
| 39 |
Revealing the Biological Meaning of Alternative Optimal Solutions of an E. coli Core Model through a System Identification Based Framework
|
Hilliard, Matthew
|
|
2018
|
51 |
19 |
p. 42-43
|
artikel
|
| 40 |
Single cell analysis of oscillatory Ca2+ signalling in epithelial cells
|
Kumar, Nilay
|
|
2018
|
51 |
19 |
p. 116-117
|
artikel
|
| 41 |
Sufficiently Exciting Inputs for Structurally Identifiable Systems Biology Models ⁎ ⁎ This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 686282 (“CANPATHPRO”).
|
Villaverde, Alejandro F.
|
|
2018
|
51 |
19 |
p. 16-19
|
artikel
|
| 42 |
Toward Multi-Input Control: A Dual-Feedback Loop Model of the Mammalian Circadian Clock ⁎ ⁎ This work was supported by the Smith Family Graduate Science and Engineering Fellowship.
|
Brown, Lindsey S.
|
|
2018
|
51 |
19 |
p. 24-27
|
artikel
|
| 43 |
Using a System Identification based Framework to Elucidate How Scheffersomyces stipitis Shifts Redox in Response to Reduced Oxygen Supply
|
Hilliard, Matthew
|
|
2018
|
51 |
19 |
p. 110-111
|
artikel
|
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