| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A Comparative Analysis of Dynamic Models of the Central Carbon Metabolism of Escherichia coli
|
Lima, Ana Patrícia
|
|
2016
|
49 |
26 |
p. 270-276
7 p.
|
artikel
|
| 2 |
A Constrained NMF Approach to Analyze Quantitative Metagenomic Data * * Sebastien Raguideau is funded by a phD grant of the Meta-omics and Microbial Ecosystems (MME) program of INRA.
|
Raguideau, Sébastien
|
|
2016
|
49 |
26 |
p. 71-76
6 p.
|
artikel
|
| 3 |
A curvilinear Model Approach: Actin Cortex Clustering Due to ATP-induced Myosin Pulls
|
Wölfer, Christian
|
|
2016
|
49 |
26 |
p. 103-108
6 p.
|
artikel
|
| 4 |
Analysis of Circadian Cellular Bioluminescence Recordings using a Kalman Smoother
|
Ananthasubramaniam, Bharath
|
|
2016
|
49 |
26 |
p. 190-193
4 p.
|
artikel
|
| 5 |
Analyzing the Impact of Heterogeneity in Genetically Engineered Cell Lines for Influenza Vaccine Production Using Population Balance Modeling
|
Dürr, Robert
|
|
2016
|
49 |
26 |
p. 225-230
6 p.
|
artikel
|
| 6 |
A Parallel Modelling Algorithm for Simulating Calcium Release in Cells
|
Stoddard, Jeremy G.
|
|
2016
|
49 |
26 |
p. 83-88
6 p.
|
artikel
|
| 7 |
A Simplified 2D Heart Model of the Wolff-Parkinson-White Syndrome
|
Zeile, Clemens
|
|
2016
|
49 |
26 |
p. 26-31
6 p.
|
artikel
|
| 8 |
A supplemental treatment for chemotherapy: Control simulation using a mathematical model with estimated parameters based on in vivo experiment
|
Paryad-zanjani, S.
|
|
2016
|
49 |
26 |
p. 277-282
6 p.
|
artikel
|
| 9 |
A “Virtual Patient” Cohort and Mathematical Model of Glucose Dynamics in Critical Care
|
Knab, Timothy D.
|
|
2016
|
49 |
26 |
p. 1-7
7 p.
|
artikel
|
| 10 |
Bringing the parts together: Steps towards an in-silico protocell
|
Schneider, Eugenia
|
|
2016
|
49 |
26 |
p. 20-25
6 p.
|
artikel
|
| 11 |
Contents
|
|
|
2016
|
49 |
26 |
p. i-vi
nvt p.
|
artikel
|
| 12 |
Contractivity of a genetic circuit with internal feedback and cell-to-cell communication * * This research was partially funded by grant FEDER-CICYT DPI2014-55276-C5-1-R. Yadira Boada thanks grant FPI/2013-3242 of the Universitat Politècnica de Valencia.
|
Picó-Marco, E.
|
|
2016
|
49 |
26 |
p. 213-218
6 p.
|
artikel
|
| 13 |
Control of a Class of Large-Scale Boolean Networks for Biological Systems Using Constant Inputs * * This research was supported in part by the National Research Foundation of Korea (NRF) grants funded by the Korea Government, the Ministry of Science, ICT & Future Planning (No. 2015M3A9A7067220, 2014R1A2A1A10052404, and 2013M3A9A7046303), and in part by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT and Future Planning (No. 2015R1A2A1A15054026).
|
Yang, Jung–Min
|
|
2016
|
49 |
26 |
p. 300-305
6 p.
|
artikel
|
| 14 |
Control of gene expression for the study of neurodegenerative disorders: a proof-of-principle experimental study
|
Perrino, Giansimone
|
|
2016
|
49 |
26 |
p. 8-13
6 p.
|
artikel
|
| 15 |
Control of the production of Saccharomyces cerevisiae on the basis of a reduced metabolic model * * This research is funded by the German Ministry of Research an Technology (BMBF) in the context of the YeastSent project (031A301A): “Volatile metabolites as proxy for metabolic network operation of Saccharomyces cerevisiae”
|
Wegerhoff, Sven
|
|
2016
|
49 |
26 |
p. 201-206
6 p.
|
artikel
|
| 16 |
Coupling cellular phenotype and mechanics to understand extracellular matrix formation and homeostasis in osteoarthritis * * financial support through BMBF project OVERLOAD-PrevOp, grant number 01EC1408H is acknowledged.
|
Sunkara, Vikram
|
|
2016
|
49 |
26 |
p. 38-43
6 p.
|
artikel
|
| 17 |
Dynamic macroscopic model of dengue viral amplification in vero cell cultures
|
Abbate, T.
|
|
2016
|
49 |
26 |
p. 159-164
6 p.
|
artikel
|
| 18 |
Dynamic metabolic flux analysis of underdetermined and overdetermined metabolic networks
|
Fernandes, Sofia
|
|
2016
|
49 |
26 |
p. 318-323
6 p.
|
artikel
|
| 19 |
Efficient Computation of All Distinct Realization Structures of Kinetic Systems
|
Tuza, Zoltan A.
|
|
2016
|
49 |
26 |
p. 194-200
7 p.
|
artikel
|
| 20 |
Extraction of Physiological State Functions in Heterogeneous Cell Population Models * * The authors of this paper gratefully acknowledge the financial support provided by the DFG (German Research Foundation) for this research work (grant WA2965/1-1).
|
Hussain, Mubashir
|
|
2016
|
49 |
26 |
p. 258-263
6 p.
|
artikel
|
| 21 |
Finding targets for genome reduction in Streptomyces lividans TK24 using flux balance analysis
|
Daniels, Wouter
|
|
2016
|
49 |
26 |
p. 252-257
6 p.
|
artikel
|
| 22 |
From a discrete to continuous actuation for improved real-time control of gene expression in mammalian cells
|
Postiglione, Lorena
|
|
2016
|
49 |
26 |
p. 14-19
6 p.
|
artikel
|
| 23 |
Fusion detection in time-lapse microscopy images : application to lipid droplets coalescence in plant seeds
|
Deslandes, François
|
|
2016
|
49 |
26 |
p. 239-244
6 p.
|
artikel
|
| 24 |
Gene Regulatory Network Inference Using Time-Stamped Cross-Sectional Single Cell Expression Data
|
Gao, Nan Papili
|
|
2016
|
49 |
26 |
p. 147-152
6 p.
|
artikel
|
| 25 |
Identification of Functional Connections in Biological Neural Networks Using Dynamic Bayesian Networks
|
Dong, Chaoyi
|
|
2016
|
49 |
26 |
p. 178-183
6 p.
|
artikel
|
| 26 |
Improving Bioprocess Productivity Using Constraint-Based Models in a Dynamic Optimization Scheme
|
Jabarivelisdeh, Banafsheh
|
|
2016
|
49 |
26 |
p. 245-251
7 p.
|
artikel
|
| 27 |
Inferring Causal Gene Targets from Time Course Expression Data
|
Noh, Heeju
|
|
2016
|
49 |
26 |
p. 350-356
7 p.
|
artikel
|
| 28 |
In silico Analysis of Clostridium difficile Biofilm Metabolism and Treatment * * The authors also wish to acknowledge NIH (Award U01EB019416) and NSF (Award 1511346) for funding this research.
|
Henson, Michael A.
|
|
2016
|
49 |
26 |
p. 153-158
6 p.
|
artikel
|
| 29 |
Integrating classifiers across datasets improves consistency of biomarker predictions for sepsis
|
Saraiva, João Pedro
|
|
2016
|
49 |
26 |
p. 95-102
8 p.
|
artikel
|
| 30 |
Invariant based control of induction and maintenance phases for anesthesia
|
Fiacchini, Mirko
|
|
2016
|
49 |
26 |
p. 50-55
6 p.
|
artikel
|
| 31 |
Irreversible port-Hamiltonian Approach to Modeling and Analyzing of Non-isothermal Chemical Reaction Networks
|
Wang, Li
|
|
2016
|
49 |
26 |
p. 134-139
6 p.
|
artikel
|
| 32 |
Maps for when the living gets tough: Maneuvering through a hostile energy landscape
|
Mondeel, Thierry D.G.A.
|
|
2016
|
49 |
26 |
p. 364-370
7 p.
|
artikel
|
| 33 |
Mathematical Modelling of Anaerobic Digestion with Hydrogen and Methane Production * * This research has been partially supported by the Bulgarian Science Fund under contract No. DFNI–E02/13. The work of the second author has been partially supported by Sofia University “St Kl. Ohridski” under contract No. 58/06.04.2016.
|
Borisov, Milen
|
|
2016
|
49 |
26 |
p. 231-238
8 p.
|
artikel
|
| 34 |
Metabolic fluxes in recombinant Streptomyces lividans analyzed with 13C-based metabolic flux analysis
|
Bouvin, Jeroen
|
|
2016
|
49 |
26 |
p. 336-343
8 p.
|
artikel
|
| 35 |
Metabolic modeling of C. sorokiniana diauxic heterotrophic growth
|
Baroukh, Caroline
|
|
2016
|
49 |
26 |
p. 330-335
6 p.
|
artikel
|
| 36 |
Metabolomics and Network Biology: sex comparative analysis of mouse brain regional metabolic physiology
|
Vasilopoulou, Catherine G.
|
|
2016
|
49 |
26 |
p. 283-285
3 p.
|
artikel
|
| 37 |
Model reduction of detailed-balanced reaction networks by clustering linkage classes
|
Rao, Shodhan
|
|
2016
|
49 |
26 |
p. 219-224
6 p.
|
artikel
|
| 38 |
Monotonicity of Kinetic Proofreading
|
Kallies, Christian
|
|
2016
|
49 |
26 |
p. 306-311
6 p.
|
artikel
|
| 39 |
Multi-Physics Modeling of Light-Limited Microalgae Growth in Raceway Ponds
|
Nikolaou, Andreas
|
|
2016
|
49 |
26 |
p. 324-329
6 p.
|
artikel
|
| 40 |
New Concepts for Evaluating the Performance of Computational Methods * * The author acknowledge financial support by the by the German Ministry of Education and Research (BMBF) via e:Bio Grant No. 031L0080.
|
Kreutz, Clemens
|
|
2016
|
49 |
26 |
p. 63-70
8 p.
|
artikel
|
| 41 |
Normalization of Western blot data affects the statistics of estimators * * This work was supported by the German Federal Ministry of Education and Research (BMBF) within the e:Bio-Innovationswettbewerb Systembiologie project PREDICT (grant number FKZ0316186A) and the German Research Foundation (DFG) within the Cluster of Excellence in Simulation Technology (EXC 310/2) at the University of Stuttgart.
|
Thomaseth, Caterina
|
|
2016
|
49 |
26 |
p. 56-62
7 p.
|
artikel
|
| 42 |
On the personalised modelling of cancer signalling * * Supported by EU FP7 grant “SynSignal” (No. 613879).
|
Fey, Dirk
|
|
2016
|
49 |
26 |
p. 312-317
6 p.
|
artikel
|
| 43 |
Optimal Scheduling of Vaccination Campaigns Using a Direct Dynamic Optimization Method
|
Correa Cordova, Max Leo
|
|
2016
|
49 |
26 |
p. 207-212
6 p.
|
artikel
|
| 44 |
Optimising time-series experimental design for modelling of circadian rhythms: the value of transient data
|
Mombaerts, Laurent
|
|
2016
|
49 |
26 |
p. 109-113
5 p.
|
artikel
|
| 45 |
Optimum Experimental Design for Patient Specific Mathematical Leukopenia Models * * This project has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 647573), which is gratefully acknowledged.
|
Jost, Felix
|
|
2016
|
49 |
26 |
p. 344-349
6 p.
|
artikel
|
| 46 |
Parameter estimation for leukocyte dynamics after chemotherapy * * This research was supported by a research grant of the “nternational Max Planck Research School (IMPRS) for Advanced Methods in Process and System Engineering (Magdeburg)” and from the European Research Council via the Consolidator Grant MODEST-647573.
|
Rinke, Kristine
|
|
2016
|
49 |
26 |
p. 44-49
6 p.
|
artikel
|
| 47 |
Parameter identification in synthetic biological circuits using multi-objective optimization * * This work is partially supported by Spanish government and European Union (FEDER-CICYT DPI2011-28112-C04-01, and DPI2014-55276-C5-1). Y.B. thanks grant FPI/2013-3242 of Universitat Politècnica de València and Becas Iberoamérica of Santander Group, Spain 2015. G.R.M. thanks the partial support provided by the postdoctoral fellowship BJT-304804/2014-2 from the National Council of Scientific and Technologic Development of Brazil. A.V. thanks the Max Planck Society, the CSBD and the MPI-CBG. We are grateful to Dr. C.Baüerl and Dr. D. Provencio at the SB2CLab for their help in plasmid construction and getting experimental data. Also to Dr. V. Monedero at IATA-CSIC for allowing us to use the POLARstar plate reader at his lab.
|
Boada, Y.
|
|
2016
|
49 |
26 |
p. 77-82
6 p.
|
artikel
|
| 48 |
Preconditioned Metropolis sampling as a strategy to improve efficiency in Posterior exploration * * The work was supported by the Swedish Research Council within the UPMARC Linnaeus center of Excellence (S. Engblom) and by BMBF (Germany) project PrevOp-OVERLOAD, grant number 01EC1408H (V. Sunkara).
|
Engblom, Stefan
|
|
2016
|
49 |
26 |
p. 89-94
6 p.
|
artikel
|
| 49 |
Protein-Level Control of Metabolism: Design Principles and Prospects from a Representative System
|
Euler, Christian K.
|
|
2016
|
49 |
26 |
p. 165-170
6 p.
|
artikel
|
| 50 |
Quantitative comparison of competing PDE models for Pomlp dynamics in fission yeast * * The authors acknowledge financial support from the Postdoctoral Fellowship Program (PFP) of the Helmholtz Zentrum Munchen.
|
Hross, Sabrina
|
|
2016
|
49 |
26 |
p. 264-269
6 p.
|
artikel
|
| 51 |
Reconstruction of ensemble of single-cell time trajectories from discrete-time fluorescence data: Oscillatory MAPK dynamics
|
Kalantre, Girija S.
|
|
2016
|
49 |
26 |
p. 184-189
6 p.
|
artikel
|
| 52 |
Robustness and filtering properties of ubiquitous signaling network motifs * * This work has been funded by the German Research Foundation (DFG) as part of the Transregional Collaborative Research Centre (SFB/Transregio) 141 Biological Design and Integrative Structures/project B05.
|
Paul, Debdas
|
|
2016
|
49 |
26 |
p. 120-127
8 p.
|
artikel
|
| 53 |
Set-based Experiment Design for Model Discrimination Using Bilevel Optimization
|
Rudolph, Nadine
|
|
2016
|
49 |
26 |
p. 295-299
5 p.
|
artikel
|
| 54 |
Spatiotemporal Metabolic Modeling of a Chronic Wound Biofilm Consortium * * The authors wish to acknowledge NIH (Award U01EB019416) and NSF (Award 1511346) for funding this research.
|
Phalak, Poonam
|
|
2016
|
49 |
26 |
p. 32-37
6 p.
|
artikel
|
| 55 |
Streamlining GC-MS metabolomic analysis using the M-IOLITE software suite
|
Maga-Nteve, Christoniki
|
|
2016
|
49 |
26 |
p. 286-288
3 p.
|
artikel
|
| 56 |
Structural Identifiability Analysis via Extended Observability and Decomposition
|
Villaverde, Alejandro F.
|
|
2016
|
49 |
26 |
p. 171-177
7 p.
|
artikel
|
| 57 |
The impact of experimental data quality on computational systems biology and engineering
|
Carius, L.
|
|
2016
|
49 |
26 |
p. 140-146
7 p.
|
artikel
|
| 58 |
The Regulation of Cell Motility Through an Excitable Network
|
Bhattacharya, Sayak
|
|
2016
|
49 |
26 |
p. 357-363
7 p.
|
artikel
|
| 59 |
Thermodynamically constrained averaging theory for cancer growth modelling * * Horizon 2020 MSCA grant agreement No 642295 www.melplex.eu
|
Albrecht, Marco
|
|
2016
|
49 |
26 |
p. 289-294
6 p.
|
artikel
|
| 60 |
Validation methods for population models of gene expression dynamics
|
González-Vargas, Andrés M.
|
|
2016
|
49 |
26 |
p. 114-119
6 p.
|
artikel
|
| 61 |
Zero-Retroactivity Subtraction Module for Embedded Feedback Control of Chemical Reaction Networks
|
Bilotta, Mariaconcetta
|
|
2016
|
49 |
26 |
p. 128-133
6 p.
|
artikel
|
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