|
| << vorige | volgende >> |
Tijdschrift beschrijving
Alle jaargangen van het bijbehorende tijdschrift
Alle afleveringen van het bijbehorende jaargang
Alle artikelen van de bijbehorende aflevering
Details van artikel 7 van 25 gevonden artikelen
| Titel: |
Building a Genome Database Using an Object-Oriented Approach |
| Auteur: |
Anna Barbasiewicz Lin Liu B. Franz Lang Gertraud Burger |
| Verschenen in: |
In silico biology |
| Paginering: | Jaargang 2 (2002) nr. 3 pagina's 213-217 |
| Jaar: |
2002-12-28 |
| Inhoud: |
GOBASE is a relational database that integrates data associated with mitochondria and chloro-plasts. The most important data in GOBASE, i. e., molecular sequences and taxonomic information, are obtained from the public sequence data repository at the National Center for Biotechnology Information (NCBI), and are validated by our experts. Maintaining a curated genomic database comes with a towering labor cost, due to the shear volume of available genomic sequences and the plethora of annotation errors and omissions in records re-trieved from public repositories. Here we describe our approach to increase automation of the database population process, thereby reducing manual intervention. As a first step, we used Unified Modeling Language (UML) to construct a list of potential errors. Each case was evaluated independently, and an expert solution was devised, and represented as a diagram. Subsequently, the UML diagrams were used as templates for writing object-oriented automation programs in the Java programming language. |
| Uitgever: |
IOS Press |
| Bronbestand: |
Elektronische Wetenschappelijke Tijdschriften |
Details van artikel 7 van 25 gevonden artikelen
| << vorige | volgende >> |