| no |
title |
author |
magazine |
year |
volume |
issue |
page(s) |
type |
| 1 |
A common type system for clinical natural language processing
|
Wu, Stephen T
|
|
2013
|
|
1 |
|
article
|
| 2 |
Analysing Syntactic Regularities and Irregularities in SNOMED-CT
|
Mikroyannidi, Eleni
|
|
2012
|
|
1 |
|
article
|
| 3 |
Analysis of syntactic and semantic features for fine-grained event-spatial understanding in outbreak news reports
|
Chanlekha, Hutchatai
|
|
2010
|
|
1 |
|
article
|
| 4 |
An ontology-based exploration of the concepts and relationships in the activities and participation component of the international classification of functioning, disability and health
|
Della Mea, Vincenzo
|
|
2012
|
|
1 |
|
article
|
| 5 |
Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank
|
Pathak, Jyotishman
|
|
2012
|
|
1 |
|
article
|
| 6 |
Applying the functional abnormality ontology pattern to anatomical functions
|
Hoehndorf, Robert
|
|
2010
|
|
1 |
|
article
|
| 7 |
A semantic-based method for extracting concept definitions from scientific publications: evaluation in the autism phenotype domain
|
Hassanpour, Saeed
|
|
2013
|
|
1 |
|
article
|
| 8 |
A shortest-path graph kernel for estimating gene product semantic similarity
|
Alvarez, Marco A
|
|
2011
|
|
1 |
|
article
|
| 9 |
A unified approach for debugging is-a structure and mappings in networked taxonomies
|
Lambrix, Patrick
|
|
2013
|
|
1 |
|
article
|
| 10 |
Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP
|
Oellrich, Anika
|
|
2013
|
|
1 |
|
article
|
| 11 |
A 2012 Workshop: Vaccine and Drug Ontology in the Study of Mechanism and Effect (VDOSME 2012)
|
He, Yongqun
|
|
2012
|
|
1 |
|
article
|
| 12 |
BioLemmatizer: a lemmatization tool for morphological processing of biomedical text
|
Liu, Haibin
|
|
2012
|
|
1 |
|
article
|
| 13 |
Biomedical Semantics: the Hub for Biomedical Research 2.0
|
Rebholz-Schuhmann, Dietrich
|
|
2010
|
|
1 |
|
article
|
| 14 |
BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements
|
Pérez, María
|
|
2013
|
|
1 |
|
article
|
| 15 |
Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology
|
Lin, Yu
|
|
2011
|
|
1 |
|
article
|
| 16 |
Building Linked Open Data towards integration of biomedical scientific literature with DBpedia
|
Yamamoto, Yasunori
|
|
2013
|
|
1 |
|
article
|
| 17 |
COEUS: “semantic web in a box” for biomedical applications
|
Lopes, Pedro
|
|
2012
|
|
1 |
|
article
|
| 18 |
De-identifying Swedish clinical text - refinement of a gold standard and experiments with Conditional random fields
|
Dalianis, Hercules
|
|
2010
|
|
1 |
|
article
|
| 19 |
Deploying and sharing U-Compare workflows as web services
|
Kontonatsios, Georgios
|
|
2013
|
|
1 |
|
article
|
| 20 |
Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time?
|
Torii, Manabu
|
|
2014
|
|
1 |
|
article
|
| 21 |
Developing a semantically rich ontology for the biobank-administration domain
|
Brochhausen, Mathias
|
|
2013
|
|
1 |
|
article
|
| 22 |
Discovering opinion leaders for medical topics using news articles
|
Jonnalagadda, Siddhartha
|
|
2012
|
|
1 |
|
article
|
| 23 |
Disjunctive shared information between ontology concepts: application to Gene Ontology
|
Couto, Francisco M
|
|
2011
|
|
1 |
|
article
|
| 24 |
Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness
|
Boyce, Richard D
|
|
2013
|
|
1 |
|
article
|
| 25 |
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update
|
Hayamizu, Terry F
|
|
2013
|
|
1 |
|
article
|
| 26 |
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
|
Segerdell, Erik
|
|
2013
|
|
1 |
|
article
|
| 27 |
Enriching a primary health care version of ICD-10 using SNOMED CT mapping
|
Nyström, Mikael
|
|
2010
|
|
1 |
|
article
|
| 28 |
Enrichment analysis applied to disease prognosis
|
Machado, Catia M
|
|
2013
|
|
1 |
|
article
|
| 29 |
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources
|
Rebholz-Schuhmann, Dietrich
|
|
2013
|
|
1 |
|
article
|
| 30 |
Extending and encoding existing biological terminologies and datasets for use in the reasoned semantic web
|
Samadian, Soroush
|
|
2012
|
|
1 |
|
article
|
| 31 |
Extraction of potential adverse drug events from medical case reports
|
Gurulingappa, Harsha
|
|
2012
|
|
1 |
|
article
|
| 32 |
FlexiTerm: a flexible term recognition method
|
Spasić, Irena
|
|
2013
|
|
1 |
|
article
|
| 33 |
Foundations for a realist ontology of mental disease
|
Ceusters, Werner
|
|
2010
|
|
1 |
|
article
|
| 34 |
Functional tissue units and their primary tissue motifs in multi-scale physiology
|
de Bono, Bernard
|
|
2013
|
|
1 |
|
article
|
| 35 |
Function of dynamic models in systems biology: linking structure to behaviour
|
Knüpfer, Christian
|
|
2013
|
|
1 |
|
article
|
| 36 |
GalenOWL: Ontology-based drug recommendations discovery
|
Doulaverakis, Charalampos
|
|
2012
|
|
1 |
|
article
|
| 37 |
GOMMA: a component-based infrastructure for managing and analyzing life science ontologies and their evolution
|
Kirsten, Toralf
|
|
2011
|
|
1 |
|
article
|
| 38 |
GO2PUB: Querying PubMed with semantic expansion of gene ontology terms
|
Bettembourg, Charles
|
|
2012
|
|
1 |
|
article
|
| 39 |
HuPSON: the human physiology simulation ontology
|
Gündel, Michaela
|
|
2013
|
|
1 |
|
article
|
| 40 |
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining
|
Hur, Junguk
|
|
2012
|
|
1 |
|
article
|
| 41 |
Identifying and relating biological concepts in the Catalogue of Life
|
Jones, Andrew C
|
|
2011
|
|
1 |
|
article
|
| 42 |
IDOMAL: the malaria ontology revisited
|
Topalis, Pantelis
|
|
2013
|
|
1 |
|
article
|
| 43 |
Introducing glycomics data into the Semantic Web
|
Aoki-Kinoshita, Kiyoko F
|
|
2013
|
|
1 |
|
article
|
| 44 |
MAPI: a software framework for distributed biomedical applications
|
Karlsson, Johan
|
|
2013
|
|
1 |
|
article
|
| 45 |
Monitoring named entity recognition: the League Table
|
Rebholz-Schuhmann, Dietrich
|
|
2013
|
|
1 |
|
article
|
| 46 |
Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology
|
Zhang, Yuji
|
|
2013
|
|
1 |
|
article
|
| 47 |
Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis
|
Tao, Cui
|
|
2012
|
|
1 |
|
article
|
| 48 |
Ontology of physics for biology: representing physical dependencies as a basis for biological processes
|
Cook, Daniel L
|
|
2013
|
|
1 |
|
article
|
| 49 |
Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses
|
Lin, Yu
|
|
2012
|
|
1 |
|
article
|
| 50 |
OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows
|
Aranguren, Mikel Egaña
|
|
2013
|
|
1 |
|
article
|
| 51 |
OWL model of clinical trial eligibility criteria compatible with partially-known information
|
Dameron, Olivier
|
|
2013
|
|
1 |
|
article
|
| 52 |
PAV ontology: provenance, authoring and versioning
|
Ciccarese, Paolo
|
|
2013
|
|
1 |
|
article
|
| 53 |
Pooling annotated corpora for clinical concept extraction
|
Wagholikar, Kavishwar B
|
|
2013
|
|
1 |
|
article
|
| 54 |
Profiling structured product labeling with NDF-RT and RxNorm
|
Zhu, Qian
|
|
2012
|
|
1 |
|
article
|
| 55 |
Protein interaction sentence detection using multiple semantic kernels
|
Polajnar, Tamara
|
|
2011
|
|
1 |
|
article
|
| 56 |
Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD
|
Nigam, Rajni
|
|
2013
|
|
1 |
|
article
|
| 57 |
Semantically enabling a genome-wide association study database
|
Beck, Tim
|
|
2012
|
|
1 |
|
article
|
| 58 |
Semantic querying of relational data for clinical intelligence: a semantic web services-based approach
|
Riazanov, Alexandre
|
|
2013
|
|
1 |
|
article
|
| 59 |
Semantic validation of the use of SNOMED CT in HL7 clinical documents
|
Heymans, Stijn
|
|
2011
|
|
1 |
|
article
|
| 60 |
Simple tricks for improving pattern-based information extraction from the biomedical literature
|
Nguyen, Quang Long
|
|
2010
|
|
1 |
|
article
|
| 61 |
The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications
|
Smith, Jennifer R
|
|
2013
|
|
1 |
|
article
|
| 62 |
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
|
Katayama, Toshiaki
|
|
2010
|
|
1 |
|
article
|
| 63 |
The Drosophila anatomy ontology
|
Costa, Marta
|
|
2013
|
|
1 |
|
article
|
| 64 |
The Drosophila phenotype ontology
|
Osumi-Sutherland, David
|
|
2013
|
|
1 |
|
article
|
| 65 |
The environment ontology: contextualising biological and biomedical entities
|
Buttigieg, Pier Luigi
|
|
2013
|
|
1 |
|
article
|
| 66 |
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments
|
Roncaglia, Paola
|
|
2013
|
|
1 |
|
article
|
| 67 |
The mouse pathology ontology, MPATH; structure and applications
|
Schofield, Paul N
|
|
2013
|
|
1 |
|
article
|
| 68 |
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
|
Katayama, Toshiaki
|
|
2011
|
|
1 |
|
article
|
| 69 |
The neurological disease ontology
|
Jensen, Mark
|
|
2013
|
|
1 |
|
article
|
| 70 |
The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms
|
Parikh, Priti P
|
|
2012
|
|
1 |
|
article
|
| 71 |
The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines
|
Marcos, Erica
|
|
2013
|
|
1 |
|
article
|
| 72 |
The pathway ontology – updates and applications
|
Petri, Victoria
|
|
2014
|
|
1 |
|
article
|
| 73 |
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
|
Katayama, Toshiaki
|
|
2013
|
|
1 |
|
article
|
| 74 |
The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation
|
Wilkinson, Mark D
|
|
2011
|
|
1 |
|
article
|
| 75 |
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes
|
Midford, Peter E
|
|
2013
|
|
1 |
|
article
|
| 76 |
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species
|
Park, Carissa A
|
|
2013
|
|
1 |
|
article
|
| 77 |
Towards the creation of a flexible classification scheme for voluntarily reported transfusion and laboratory safety events
|
Whitehurst, Julie M
|
|
2012
|
|
1 |
|
article
|
| 78 |
Using ontologies to study cell transitions
|
Fuellen, Georg
|
|
2013
|
|
1 |
|
article
|
| 79 |
Using Semantic Web technology to support icd-11 textual definitions authoring
|
Jiang, Guoqian
|
|
2013
|
|
1 |
|
article
|
| 80 |
What's unusual in online disease outbreak news?
|
Collier, Nigel
|
|
2010
|
|
1 |
|
article
|
Journal description