| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A biclustering algorithm based on a Bicluster Enumeration Tree: application to DNA microarray data
|
Ayadi, Wassim
|
|
2009
|
|
1 |
|
artikel
|
| 2 |
A comparison and evaluation of five biclustering algorithms by quantifying goodness of biclusters for gene expression data
|
Li, Li
|
|
2012
|
|
1 |
|
artikel
|
| 3 |
A comparison of genomic copy number calls by Partek Genomics Suite, Genotyping Console and Birdsuite algorithms to quantitative PCR
|
Grayson, Britney L
|
|
2011
|
|
1 |
|
artikel
|
| 4 |
A comparison of machine learning techniques for survival prediction in breast cancer
|
Vanneschi, Leonardo
|
|
2011
|
|
1 |
|
artikel
|
| 5 |
Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data
|
Kilpinen, Sami K
|
|
2011
|
|
1 |
|
artikel
|
| 6 |
A multilevel layout algorithm for visualizing physical and genetic interaction networks, with emphasis on their modular organization
|
Tuikkala, Johannes
|
|
2012
|
|
1 |
|
artikel
|
| 7 |
An association-adjusted consensus deleterious scheme to classify homozygous Mis-sense mutations for personal genome interpretation
|
Preeprem, Thanawadee
|
|
2013
|
|
1 |
|
artikel
|
| 8 |
An automated framework for hypotheses generation using literature
|
Abedi, Vida
|
|
2012
|
|
1 |
|
artikel
|
| 9 |
An extended data mining method for identifying differentially expressed assay-specific signatures in functional genomic studies
|
Rollins, Derrick K
|
|
2010
|
|
1 |
|
artikel
|
| 10 |
A Normalized Tree Index for identification of correlated clinical parameters in microarray experiments
|
Martin, Christian W
|
|
2011
|
|
1 |
|
artikel
|
| 11 |
An R package implementation of multifactor dimensionality reduction
|
Winham, Stacey J
|
|
2011
|
|
1 |
|
artikel
|
| 12 |
A particle swarm optimization-based algorithm for finding gapped motifs
|
Lei, Chengwei
|
|
2010
|
|
1 |
|
artikel
|
| 13 |
Application of a spatially-weighted Relief algorithm for ranking genetic predictors of disease
|
Stokes, Matthew E
|
|
2012
|
|
1 |
|
artikel
|
| 14 |
Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration
|
Nelson, Rex T
|
|
2010
|
|
1 |
|
artikel
|
| 15 |
A reference guide for tree analysis and visualization
|
Pavlopoulos, Georgios A
|
|
2010
|
|
1 |
|
artikel
|
| 16 |
A review of estimation of distribution algorithms in bioinformatics
|
Armañanzas, Rubén
|
|
2008
|
|
1 |
|
artikel
|
| 17 |
A robustness study of parametric and non-parametric tests in model-based multifactor dimensionality reduction for epistasis detection
|
Mahachie John, Jestinah M
|
|
2013
|
|
1 |
|
artikel
|
| 18 |
A survey of visualization tools for biological network analysis
|
Pavlopoulos, Georgios A
|
|
2008
|
|
1 |
|
artikel
|
| 19 |
ATHENA: A knowledge-based hybrid backpropagation-grammatical evolution neural network algorithm for discovering epistasis among quantitative trait Loci
|
Turner, Stephen D
|
|
2010
|
|
1 |
|
artikel
|
| 20 |
ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network
|
Kim, Dokyoon
|
|
2013
|
|
1 |
|
artikel
|
| 21 |
Biclustering of Gene Expression Data by Correlation-Based Scatter Search
|
Nepomuceno, Juan A
|
|
2011
|
|
1 |
|
artikel
|
| 22 |
Big Data analysis on autopilot?
|
Williams, Scott M
|
|
2013
|
|
1 |
|
artikel
|
| 23 |
Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure
|
Vassura, Marco
|
|
2011
|
|
1 |
|
artikel
|
| 24 |
Caipirini: using gene sets to rank literature
|
Soldatos, Theodoros G
|
|
2012
|
|
1 |
|
artikel
|
| 25 |
Clustering-based approaches to SAGE data mining
|
Wang, Haiying
|
|
2008
|
|
1 |
|
artikel
|
| 26 |
Comprehensive analysis of human microRNA target networks
|
Satoh, Jun-ichi
|
|
2011
|
|
1 |
|
artikel
|
| 27 |
DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization
|
Erten, Sinan
|
|
2011
|
|
1 |
|
artikel
|
| 28 |
Database mining for selection of SNP markers useful in admixture mapping
|
Baye, Tesfaye M
|
|
2009
|
|
1 |
|
artikel
|
| 29 |
Data mining and the evolution of biological complexity
|
Urbach, Davnah
|
|
2011
|
|
1 |
|
artikel
|
| 30 |
Detection of changes in gene regulatory patterns, elicited by perturbations of the Hsp90 molecular chaperone complex, by visualizing multiple experiments with an animation
|
Echeverría, Pablo C
|
|
2011
|
|
1 |
|
artikel
|
| 31 |
Detection of putative new mutacins by bioinformatic analysis using available web tools
|
Nicolas, Guillaume G
|
|
2011
|
|
1 |
|
artikel
|
| 32 |
Discrete derivative: a data slicing algorithm for exploration of sharing biological networks between rheumatoid arthritis and coronary heart disease
|
Zheng, Guang
|
|
2011
|
|
1 |
|
artikel
|
| 33 |
Evolving hard problems: Generating human genetics datasets with a complex etiology
|
Himmelstein, Daniel S
|
|
2011
|
|
1 |
|
artikel
|
| 34 |
Extraction of pure components from overlapped signals in gas chromatography-mass spectrometry (GC-MS)
|
Likić, Vladimir A
|
|
2009
|
|
1 |
|
artikel
|
| 35 |
Fast approximate hierarchical clustering using similarity heuristics
|
Kull, Meelis
|
|
2008
|
|
1 |
|
artikel
|
| 36 |
Fast Gene Ontology based clustering for microarray experiments
|
Ovaska, Kristian
|
|
2008
|
|
1 |
|
artikel
|
| 37 |
Filling the gap between biology and computer science
|
Aguilar-Ruiz, Jesús S
|
|
2008
|
|
1 |
|
artikel
|
| 38 |
Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development
|
Turenne, Nicolas
|
|
2012
|
|
1 |
|
artikel
|
| 39 |
GAMETES: a fast, direct algorithm for generating pure, strict, epistatic models with random architectures
|
Urbanowicz, Ryan J
|
|
2012
|
|
1 |
|
artikel
|
| 40 |
Gene ontology analysis of pairwise genetic associations in two genome-wide studies of sporadic ALS
|
Kim, Nora Chung
|
|
2012
|
|
1 |
|
artikel
|
| 41 |
Genetic variants and their interactions in disease risk prediction – machine learning and network perspectives
|
Okser, Sebastian
|
|
2013
|
|
1 |
|
artikel
|
| 42 |
GeneWaltz--A new method for reducing the false positives of gene finding
|
Misawa, Kazuharu
|
|
2010
|
|
1 |
|
artikel
|
| 43 |
Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation, and model development
|
Pendergrass, Sarah A
|
|
2013
|
|
1 |
|
artikel
|
| 44 |
gff2sequence, a new user friendly tool for the generation of genomic sequences
|
Camiolo, Salvatore
|
|
2013
|
|
1 |
|
artikel
|
| 45 |
Global tests of P-values for multifactor dimensionality reduction models in selection of optimal number of target genes
|
Dai, Hongying
|
|
2012
|
|
1 |
|
artikel
|
| 46 |
Grammatical evolution decision trees for detecting gene-gene interactions
|
Motsinger-Reif, Alison A
|
|
2010
|
|
1 |
|
artikel
|
| 47 |
Graph representation of high-dimensional alpha-helical membrane protein data
|
Grunert, Steffen
|
|
2013
|
|
1 |
|
artikel
|
| 48 |
Hill-Climbing search and diversification within an evolutionary approach to protein structure prediction
|
Chira, Camelia
|
|
2011
|
|
1 |
|
artikel
|
| 49 |
How do alignment programs perform on sequencing data with varying qualities and from repetitive regions?
|
Yu, Xiaoqing
|
|
2012
|
|
1 |
|
artikel
|
| 50 |
Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining
|
Fleuren, Wilco WM
|
|
2013
|
|
1 |
|
artikel
|
| 51 |
Identification of SNPs associated with variola virus virulence
|
Hoen, Anne Gatewood
|
|
2013
|
|
1 |
|
artikel
|
| 52 |
Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers
|
Dybowski, J Nikolaj
|
|
2011
|
|
1 |
|
artikel
|
| 53 |
Interpol: An R package for preprocessing of protein sequences
|
Heider, Dominik
|
|
2011
|
|
1 |
|
artikel
|
| 54 |
Large scale analysis of positional effects of single-base mismatches on microarray gene expression data
|
Duan, Fenghai
|
|
2010
|
|
1 |
|
artikel
|
| 55 |
LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium
|
Bush, William S
|
|
2009
|
|
1 |
|
artikel
|
| 56 |
Logic minimization and rule extraction for identification of functional sites in molecular sequences
|
Cruz-Cano, Raul
|
|
2012
|
|
1 |
|
artikel
|
| 57 |
LVQ-SMOTE – Learning Vector Quantization based Synthetic Minority Over–sampling Technique for biomedical data
|
Nakamura, Munehiro
|
|
2013
|
|
1 |
|
artikel
|
| 58 |
MicroRNA-mediated regulation of target genes in several brain regions is correlated to both microRNA-targeting-specific promoter methylation and differential microRNA expression
|
Taguchi, Y-h
|
|
2013
|
|
1 |
|
artikel
|
| 59 |
‘MicroRNA Targets’, a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana
|
Bülow, Lorenz
|
|
2012
|
|
1 |
|
artikel
|
| 60 |
Mining beyond the exome
|
Urbach, Davnah
|
|
2011
|
|
1 |
|
artikel
|
| 61 |
Mining SOM expression portraits: feature selection and integrating concepts of molecular function
|
Wirth, Henry
|
|
2012
|
|
1 |
|
artikel
|
| 62 |
Mining the diseasome
|
Urbach, Davnah
|
|
2011
|
|
1 |
|
artikel
|
| 63 |
Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes
|
Reverter, Antonio
|
|
2008
|
|
1 |
|
artikel
|
| 64 |
Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics approach
|
McEachin, Richard C
|
|
2008
|
|
1 |
|
artikel
|
| 65 |
Molecular network analysis of human microRNA targetome: from cancers to Alzheimer’s disease
|
Satoh, Jun-ichi
|
|
2012
|
|
1 |
|
artikel
|
| 66 |
Multifactor dimensionality reduction analysis identifies specific nucleotide patterns promoting genetic polymorphisms
|
Arehart, Eric
|
|
2009
|
|
1 |
|
artikel
|
| 67 |
Multifactor dimensionality reduction reveals a three-locus epistatic interaction associated with susceptibility to pulmonary tuberculosis
|
Collins, Ryan L
|
|
2013
|
|
1 |
|
artikel
|
| 68 |
Multivariate methods and software for association mapping in dose‐response genome‐wide association studies
|
Brown, Chad C
|
|
2012
|
|
1 |
|
artikel
|
| 69 |
Multivariate profiling of neurodegeneration-associated changes in a subcellular compartment of neurons via image processing
|
Kumarasamy, Saravana K
|
|
2008
|
|
1 |
|
artikel
|
| 70 |
Murine colon proteome and characterization of the protein pathways
|
Magdeldin, Sameh
|
|
2012
|
|
1 |
|
artikel
|
| 71 |
Neural networks for genetic epidemiology: past, present, and future
|
Motsinger-Reif, Alison A
|
|
2008
|
|
1 |
|
artikel
|
| 72 |
No-boundary thinking in bioinformatics research
|
Huang, Xiuzhen
|
|
2013
|
|
1 |
|
artikel
|
| 73 |
Optimization and visualization of the edge weights in optimal assignment methods for virtual screening
|
Rosenbaum, Lars
|
|
2013
|
|
1 |
|
artikel
|
| 74 |
Partitioning clustering algorithms for protein sequence data sets
|
Fayech, Sondes
|
|
2009
|
|
1 |
|
artikel
|
| 75 |
Peer2ref: a peer-reviewer finding web tool that uses author disambiguation
|
Andrade-Navarro, Miguel A
|
|
2012
|
|
1 |
|
artikel
|
| 76 |
3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach
|
Shameer, Khader
|
|
2009
|
|
1 |
|
artikel
|
| 77 |
pGQL: A probabilistic graphical query language for gene expression time courses
|
Schilling, Ruben
|
|
2011
|
|
1 |
|
artikel
|
| 78 |
Predicting the difficulty of pure, strict, epistatic models: metrics for simulated model selection
|
Urbanowicz, Ryan J
|
|
2012
|
|
1 |
|
artikel
|
| 79 |
Prediction of Drosophila melanogaster gene function using Support Vector Machines
|
Mitsakakis, Nicholas
|
|
2013
|
|
1 |
|
artikel
|
| 80 |
Preprocessing differential methylation hybridization microarray data
|
Sun, Shuying
|
|
2011
|
|
1 |
|
artikel
|
| 81 |
Risk score modeling of multiple gene to gene interactions using aggregated-multifactor dimensionality reduction
|
Dai, Hongying
|
|
2013
|
|
1 |
|
artikel
|
| 82 |
Rule based classifier for the analysis of gene-gene and gene-environment interactions in genetic association studies
|
Lehr, Thorsten
|
|
2011
|
|
1 |
|
artikel
|
| 83 |
Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database
|
Arita, Masanori
|
|
2008
|
|
1 |
|
artikel
|
| 84 |
SICTIN: Rapid footprinting of massively parallel sequencing data
|
Enroth, Stefan
|
|
2010
|
|
1 |
|
artikel
|
| 85 |
Spatially Uniform ReliefF (SURF) for computationally-efficient filtering of gene-gene interactions
|
Greene, Casey S
|
|
2009
|
|
1 |
|
artikel
|
| 86 |
Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments
|
Schulz-Trieglaff, Ole
|
|
2009
|
|
1 |
|
artikel
|
| 87 |
Structural updates of alignment of protein domains and consequences on evolutionary models of domain superfamilies
|
Mutt, Eshita
|
|
2013
|
|
1 |
|
artikel
|
| 88 |
Synthesis-View: visualization and interpretation of SNP association results for multi-cohort, multi-phenotype data and meta-analysis
|
Pendergrass, Sarah A
|
|
2010
|
|
1 |
|
artikel
|
| 89 |
Taxon ordering in phylogenetic trees by means of evolutionary algorithms
|
Cerutti, Francesco
|
|
2011
|
|
1 |
|
artikel
|
| 90 |
The central role of biological data mining in connecting diverse disciplines
|
Moore, Jason H
|
|
2013
|
|
1 |
|
artikel
|
| 91 |
The disconnect between classical biostatistics and the biological data mining community
|
Malley, James D
|
|
2013
|
|
1 |
|
artikel
|
| 92 |
The effects of linkage disequilibrium in large scale SNP datasets for MDR
|
Grady, Benjamin J
|
|
2011
|
|
1 |
|
artikel
|
| 93 |
The limits of p-values for biological data mining
|
Malley, James D
|
|
2013
|
|
1 |
|
artikel
|
| 94 |
The multiscale backbone of the human phenotype network based on biological pathways
|
Darabos, Christian
|
|
2014
|
|
1 |
|
artikel
|
| 95 |
The spatial dimension in biological data mining
|
Urbach, Davnah
|
|
2011
|
|
1 |
|
artikel
|
| 96 |
Transcriptome bioinformatic analysis identifies potential therapeutic mechanism of pentylenetetrazole in down syndrome
|
Sharma, Abhay
|
|
2010
|
|
1 |
|
artikel
|
| 97 |
Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profiles
|
Ma, Qicheng
|
|
2008
|
|
1 |
|
artikel
|
| 98 |
Unraveling genomic variation from next generation sequencing data
|
Pavlopoulos, Georgios A
|
|
2013
|
|
1 |
|
artikel
|
| 99 |
Using Bayesian networks to discover relations between genes, environment, and disease
|
Su, Chengwei
|
|
2013
|
|
1 |
|
artikel
|
| 100 |
Using graph theory to analyze biological networks
|
Pavlopoulos, Georgios A
|
|
2011
|
|
1 |
|
artikel
|
| 101 |
Using random walks to identify cancer-associated modules in expression data
|
Petrochilos, Deanna
|
|
2013
|
|
1 |
|
artikel
|
| 102 |
Visualising associations between paired ‘omics’ data sets
|
González, Ignacio
|
|
2012
|
|
1 |
|
artikel
|
| 103 |
Visualizing genomic information across chromosomes with PhenoGram
|
Wolfe, Daniel
|
|
2013
|
|
1 |
|
artikel
|
| 104 |
Visually integrating and exploring high throughput Phenome-Wide Association Study (PheWAS) results using PheWAS-View
|
Pendergrass, Sarah A
|
|
2012
|
|
1 |
|
artikel
|
| 105 |
Weighted multiple testing procedures for genomic studies
|
Gui, Jiang
|
|
2012
|
|
1 |
|
artikel
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