Digital Library
Close Browse articles from a journal
     Journal description
       All volumes of the corresponding journal
         All issues of the corresponding volume
                                       All articles of the corresponding issues
 
                             142 results found
no title author magazine year volume issue page(s) type
1 A combinatorial approach of Proteomics and Systems Biology in unravelling the mechanisms of acute kidney injury (AKI): involvement of NMDA receptor GRIN1 in murine AKI Husi, Holger
2013
7 1 article
2 A comprehensive map of the influenza A virus replication cycle Matsuoka, Yukiko
2013
7 1 article
3 A continuous-time adaptive particle filter for estimations under measurement time uncertainties with an application to a plasma-leucine mixed effects model Krengel, Annette
2013
7 1 article
4 A kinetic model for RNA-interference of focal adhesions Hoffmann, Max
2013
7 1 article
5 A mathematical model of the unfolded protein stress response reveals the decision mechanism for recovery, adaptation and apoptosis Erguler, Kamil
2013
7 1 article
6 AMBIENT: Active Modules for Bipartite Networks - using high-throughput transcriptomic data to dissect metabolic response Bryant, William A
2013
7 1 article
7 A metabolite-centric view on flux distributions in genome-scale metabolic models Riemer, S Alexander
2013
7 1 article
8 A model of HIV drug resistance driven by heterogeneities in host immunity and adherence patterns Bershteyn, Anna
2013
7 1 article
9 A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis Ghosh, Soma
2013
7 1 article
10 Analysis of l-glutamic acid fermentation by using a dynamic metabolic simulation model of Escherichia coli Nishio, Yousuke
2013
7 1 article
11 An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation Wang, Jianxin
2013
7 1 article
12 A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype Pey, Jon
2013
7 1 article
13 Annual acknowledgement of reviewers Sands, Tim
2013
7 1 article
14 An objective function exploiting suboptimal solutions in metabolic networks Wintermute, Edwin H
2013
7 1 article
15 An online model composition tool for system biology models Coskun, Sarp A
2013
7 1 article
16 A novel function prediction approach using protein overlap networks Liang, Shide
2013
7 1 article
17 A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions Kotze, Helen L
2013
7 1 article
18 Antibacterial mechanisms identified through structural systems pharmacology Chang, Roger L
2013
7 1 article
19 Automated design of bacterial genome sequences Carrera, Javier
2013
7 1 article
20 BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats Bonnet, Eric
2013
7 1 article
21 Bridging the gap between gene expression and metabolic phenotype via kinetic models Vital-Lopez, Francisco G
2013
7 1 article
22 Carbon catabolite repression correlates with the maintenance of near invariant molecular crowding in proliferating E. coli cells Zhou, Yi
2013
7 1 article
23 Characterization of regulatory features of housekeeping and tissue-specific regulators within tissue regulatory networks Li, Pengping
2013
7 1 article
24 Cluster and propensity based approximation of a network Ranola, John Michael
2013
7 1 article
25 COBRApy: COnstraints-Based Reconstruction and Analysis for Python Ebrahim, Ali
2013
7 1 article
26 Computational estimation of tricarboxylic acid cycle fluxes using noisy NMR data from cardiac biopsies Hettling, Hannes
2013
7 1 article
27 Computational modelling of bovine ovarian follicle development Iber, Dagmar
2013
7 1 article
28 Computational modelling of the regulation of Insulin signalling by oxidative stress Smith, Graham R
2013
7 1 article
29 Consensus and conflict cards for metabolic pathway databases Stobbe, Miranda D
2013
7 1 article
30 Constructing higher-order miRNA-mRNA interaction networks in prostate cancer via hypergraph-based learning Kim, Soo-Jin
2013
7 1 article
31 Construction and analysis of the protein-protein interaction network related to essential hypertension Ran, Jihua
2013
7 1 article
32 Construction of the influenza A virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization Jin, Suoqin
2013
7 1 article
33 Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder Yang, Ruoting
2013
7 1 article
34 Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes Williams-DeVane, ClarLynda R
2013
7 1 article
35 Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks Crespo, Isaac
2013
7 1 article
36 Disentangling function from topology to infer the network properties of disease genes Ghersi, Dario
2013
7 1 article
37 Dynamic cross-regulation of antigen-specific effector and regulatory T cell subpopulations and microglia in brain autoimmunity Martinez-Pasamar, Sara
2013
7 1 article
38 Dynamic modeling of yeast meiotic initiation Ray, Debjit
2013
7 1 article
39 Dynamic modelling of microRNA regulation during mesenchymal stem cell differentiation Weber, Michael
2013
7 1 article
40 Dynamics of the quorum sensing switch: stochastic and non-stationary effects Weber, Marc
2013
7 1 article
41 Energy metabolism and glutamate-glutamine cycle in the brain: a stoichiometric modeling perspective Massucci, Francesco A
2013
7 1 article
42 ENNET: inferring large gene regulatory networks from expression data using gradient boosting Sławek, Janusz
2013
7 1 article
43 EnRICH: Extraction and Ranking using Integration and Criteria Heuristics Zhang, Xia
2013
7 1 article
44 Estimating confidence intervals in predicted responses for oscillatory biological models St John, Peter C
2013
7 1 article
45 FiloDetect: automatic detection of filopodia from fluorescence microscopy images Nilufar, Sharmin
2013
7 1 article
46 From desk to bed: Computational simulations provide indication for rheumatoid arthritis clinical trials Dent, Jennifer E
2013
7 1 article
47 Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer Li, Kening
2013
7 1 article
48 Function and design of the Nox1 system in vascular smooth muscle cells Yin, Weiwei
2013
7 1 article
49 Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum Lawler, Katherine
2013
7 1 article
50 Global insights into energetic and metabolic networks in Rhodobacter sphaeroides Imam, Saheed
2013
7 1 article
51 Glucose-methanol co-utilization in Pichia pastoris studied by metabolomics and instationary 13C flux analysis Jordà, Joel
2013
7 1 article
52 Identification of direction in gene networks from expression and methylation Simcha, David M
2013
7 1 article
53 Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework Kumar, Gaurav
2013
7 1 article
54 Identification of parameter correlations for parameter estimation in dynamic biological models Li, Pu
2013
7 1 article
55 Identification of regulatory structure and kinetic parameters of biochemical networks via mixed-integer dynamic optimization Guillén-Gosálbez, Gonzalo
2013
7 1 article
56 Identification of upstream regulators for prognostic expression signature genes in colorectal cancer Bae, Taejeong
2013
7 1 article
57 Identification of yeast cell cycle regulated genes based on genomic features Cheng, Chao
2013
7 1 article
58 Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism Barba, Matthieu
2013
7 1 article
59 Impaired coupling of local and global functional feedbacks underlies abnormal synchronization and negative symptoms of schizophrenia Noh, Kyungchul
2013
7 1 article
60 (Im)Perfect robustness and adaptation of metabolic networks subject to metabolic and gene-expression regulation: marrying control engineering with metabolic control analysis He, Fei
2013
7 1 article
61 Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator V2.0 Weber, Michael
2013
7 1 article
62 Inferring ancient metabolism using ancestral core metabolic models of enterobacteria Baumler, David J
2013
7 1 article
63 Inferring the effective TOR-dependent network: a computational study in yeast Mohammadi, Shahin
2013
7 1 article
64 Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology Santra, Tapesh
2013
7 1 article
65 Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways Pey, Jon
2013
7 1 article
66 Integrative genomics identifies candidate microRNAs for pathogenesis of experimental biliary atresia Bessho, Kazuhiko
2013
7 1 article
67 Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study Wang, Yu-Chao
2013
7 1 article
68 In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae Amara, Flavio
2013
7 1 article
69 Joint estimation of causal effects from observational and intervention gene expression data Rau, Andrea
2013
7 1 article
70 JunD/AP1 regulatory network analysis during macrophage activation in a rat model of crescentic glomerulonephritis Srivastava, Prashant K
2013
7 1 article
71 Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways Sen, Partho
2013
7 1 article
72 Knowledge-based compact disease models identify new molecular players contributing to early-stage Alzheimer’s disease Mayburd, Anatoly
2013
7 1 article
73 Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis Freyre-González, Julio A
2013
7 1 article
74 Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate Bogdał, Marta N
2013
7 1 article
75 Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling Österlund, Tobias
2013
7 1 article
76 Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens SBW25 through genome-scale metabolic modeling Borgos, Sven EF
2013
7 1 article
77 Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study Feltus, F Alex
2013
7 1 article
78 MC3: a steady-state model and constraint consistency checker for biochemical networks Yousofshahi, Mona
2013
7 1 article
79 Merging concepts - coupling an agent-based model of hematopoietic stem cells with an ODE model of granulopoiesis Krinner, Axel
2013
7 1 article
80 Mining breast cancer genes with a network based noise-tolerant approach Nie, Yaling
2013
7 1 article
81 Model composition through model reduction: a combined model of CD95 and NF-κB signaling pathways Kutumova, Elena
2013
7 1 article
82 Modeling heterogeneous responsiveness of intrinsic apoptosis pathway Ooi, Hsu Kiang
2013
7 1 article
83 Modeling mutant phenotypes and oscillatory dynamics in the Saccharomyces cerevisiae cAMP-PKA pathway Gonzales, Kevin
2013
7 1 article
84 Modeling of celiac disease immune response and the therapeutic effect of potential drugs Demin, Oleg O
2013
7 1 article
85 Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs Pokhilko, Alexandra
2013
7 1 article
86 Modularity and evolutionary constraints in a baculovirus gene regulatory network Oliveira, Juliana Velasco
2013
7 1 article
87 Modular, rule-based modeling for the design of eukaryotic synthetic gene circuits Marchisio, Mario Andrea
2013
7 1 article
88 Multilevel omic data integration in cancer cell lines: advanced annotation and emergent properties Liu, Yuanhua
2013
7 1 article
89 Multiple types of data are required to identify the mechanisms influencing the spatial expansion of melanoma cell colonies Treloar, Katrina K
2013
7 1 article
90 MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples Trifonov, Vladimir
2013
7 1 article
91 NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps Kuperstein, Inna
2013
7 1 article
92 Nested sampling for parameter inference in systems biology: application to an exemplar circadian model Aitken, Stuart
2013
7 1 article
93 Network based elucidation of drug response: from modulators to targets Iorio, Francesco
2013
7 1 article
94 Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network Misra, Ashish
2013
7 1 article
95 New network topology approaches reveal differential correlation patterns in breast cancer Bockmayr, Michael
2013
7 1 article
96 Noise propagation through extracellular signaling leads to fluctuations in gene expression Tabbaa, Omar P
2013
7 1 article
97 Novel semantic similarity measure improves an integrative approach to predicting gene functional associations Vafaee, Fatemeh
2013
7 1 article
98 3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data Kuo, Tien-Chueh
2013
7 1 article
99 Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model Oguz, Cihan
2013
7 1 article
100 Optimization of personalized therapies for anticancer treatment Vazquez, Alexei
2013
7 1 article
101 Path2Models: large-scale generation of computational models from biochemical pathway maps Büchel, Finja
2013
7 1 article
102 Post-translational regulation enables robust p53 regulation Shin, Yong-Jun
2013
7 1 article
103 Precise generation of systems biology models from KEGG pathways Wrzodek, Clemens
2013
7 1 article
104 Probabilistic strain optimization under constraint uncertainty Yousofshahi, Mona
2013
7 1 article
105 Promoter activity dynamics in the lag phase of Escherichia coli Madar, Daniel
2013
7 1 article
106 Rapid construction of metabolic models for a family of Cyanobacteria using a multiple source annotation workflow Mueller, Thomas J
2013
7 1 article
107 RaTrav: a tool for calculating mean first-passage times on biochemical networks Torchala, Mieczyslaw
2013
7 1 article
108 Reaction-contingency based bipartite Boolean modelling Flöttmann, Max
2013
7 1 article
109 Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation Pinna, Andrea
2013
7 1 article
110 Reconstruction of the experimentally supported human protein interactome: what can we learn? Klapa, Maria I
2013
7 1 article
111 Rosen’s (M,R) system in process algebra Gatherer, Derek
2013
7 1 article
112 Rule–based regulatory and metabolic model for Quorum sensing in P. aeruginosa Schaadt, Nadine S
2013
7 1 article
113 SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools Chaouiya, Claudine
2013
7 1 article
114 Sharpening of expression domains induced by transcription and microRNA regulation within a spatio-temporal model of mid-hindbrain boundary formation Hock, Sabrina
2013
7 1 article
115 Signaling dynamics of palmitate-induced ER stress responses mediated by ATF4 in HepG2 cells Cho, Hyunju
2013
7 1 article
116 SignaLink 2 – a signaling pathway resource with multi-layered regulatory networks Fazekas, Dávid
2013
7 1 article
117 Simulations of stressosome activation emphasize allosteric interactions between RsbR and RsbT Liebal, Ulf W
2013
7 1 article
118 Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems Rodriguez-Fernandez, Maria
2013
7 1 article
119 Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast Yvert, Gaël
2013
7 1 article
120 Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti Ponce-de-León, Miguel
2013
7 1 article
121 Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice Tchitchek, Nicolas
2013
7 1 article
122 Starch biosynthesis in cassava: a genome-based pathway reconstruction and its exploitation in data integration Saithong, Treenut
2013
7 1 article
123 Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis Greenfest-Allen, Emily
2013
7 1 article
124 Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κB signaling networks Joo, Jaewook
2013
7 1 article
125 Stochastic flux analysis of chemical reaction networks Kahramanoğulları, Ozan
2013
7 1 article
126 Structure, function, and behaviour of computational models in systems biology Knüpfer, Christian
2013
7 1 article
127 Summarizing cellular responses as biological process networks Lasher, Christopher D
2013
7 1 article
128 sybil – Efficient constraint-based modelling in R Gelius-Dietrich, Gabriel
2013
7 1 article
129 Systematic design methodology for robust genetic transistors based on I/O specifications via promoter-RBS libraries Lee, Yi-Ying
2013
7 1 article
130 Systems analysis reveals a transcriptional reversal of the mesenchymal phenotype induced by SNAIL-inhibitor GN-25 Azmi, Asfar S
2013
7 1 article
131 Systems biology approach to stage-wise characterization of epigenetic genes in lung adenocarcinoma Pradhan, Meeta P
2013
7 1 article
132 The development of a fully-integrated immune response model (FIRM) simulator of the immune response through integration of multiple subset models Palsson, Sirus
2013
7 1 article
133 The last generation of bacterial growth in limiting nutrient Bren, Anat
2013
7 1 article
134 The systems biology simulation core algorithm Keller, Roland
2013
7 1 article
135 Topology of molecular interaction networks Winterbach, Wynand
2013
7 1 article
136 Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress Wang, Qinghua
2013
7 1 article
137 Transcriptome meta-analysis reveals a central role for sex steroids in the degeneration of hippocampal neurons in Alzheimer’s disease Winkler, Jessica M
2013
7 1 article
138 Transdifferentiation of pancreatic cells by loss of contact-mediated signaling Back, Walter de
2013
7 1 article
139 Transient oscillatory dynamics of interferon beta signaling in macrophages Pertsovskaya, Inna
2013
7 1 article
140 Translation of SBGN maps: Process Description to Activity Flow Vogt, Torsten
2013
7 1 article
141 Validation of a model of the GAL regulatory system via robustness analysis of its bistability characteristics Salerno, Luca
2013
7 1 article
142 Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes Shi, Hongbo
2013
7 1 article
                             142 results found
 
 Koninklijke Bibliotheek - National Library of the Netherlands