| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A Boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer
|
Nagaraj, Shivashankar H
|
|
2011
|
5 |
1 |
|
artikel
|
| 2 |
A Boolean probabilistic model of metabolic adaptation to oxygen in relation to iron homeostasis and oxidative stress
|
Achcar, Fiona
|
|
2011
|
5 |
1 |
|
artikel
|
| 3 |
A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections
|
Chang, Stewart T
|
|
2011
|
5 |
1 |
|
artikel
|
| 4 |
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2
|
Thiele, Ines
|
|
2011
|
5 |
1 |
|
artikel
|
| 5 |
A computable cellular stress network model for non-diseased pulmonary and cardiovascular tissue
|
Schlage, Walter K
|
|
2011
|
5 |
1 |
|
artikel
|
| 6 |
A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities
|
Tzamali, Eleftheria
|
|
2011
|
5 |
1 |
|
artikel
|
| 7 |
A computational framework for gene regulatory network inference that combines multiple methods and datasets
|
Gupta, Rita
|
|
2011
|
5 |
1 |
|
artikel
|
| 8 |
A computational model of the hypothalamic - pituitary - gonadal axis in female fathead minnows (Pimephales promelas) exposed to 17α-ethynylestradiol and 17β-trenbolone
|
Li, Zhenhong
|
|
2011
|
5 |
1 |
|
artikel
|
| 9 |
A deterministic map of Waddington's epigenetic landscape for cell fate specification
|
Bhattacharya, Sudin
|
|
2011
|
5 |
1 |
|
artikel
|
| 10 |
A general framework for modeling growth and division of mammalian cells
|
Gauthier, John H
|
|
2011
|
5 |
1 |
|
artikel
|
| 11 |
A General Life History Theory for Effects of Caloric Restriction on Health Maintenance
|
Hou, Chen
|
|
2011
|
5 |
1 |
|
artikel
|
| 12 |
Agent-based simulation of reactions in the crowded and structured intracellular environment: Influence of mobility and location of the reactants
|
Klann, Michael T
|
|
2011
|
5 |
1 |
|
artikel
|
| 13 |
A metabolic model of the mitochondrion and its use in modelling diseases of the tricarboxylic acid cycle
|
Smith, Anthony C
|
|
2011
|
5 |
1 |
|
artikel
|
| 14 |
A method for zooming of nonlinear models of biochemical systems
|
Sunnåker, Mikael
|
|
2011
|
5 |
1 |
|
artikel
|
| 15 |
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer
|
Shen, Changyu
|
|
2011
|
5 |
1 |
|
artikel
|
| 16 |
A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology
|
Bordbar, Aarash
|
|
2011
|
5 |
1 |
|
artikel
|
| 17 |
Analog regulation of metabolic demand
|
Sonnenschein, Nikolaus
|
|
2011
|
5 |
1 |
|
artikel
|
| 18 |
Analysing GCN4 translational control in yeast by stochastic chemical kinetics modelling and simulation
|
You, Tao
|
|
2011
|
5 |
1 |
|
artikel
|
| 19 |
Analysis of complex metabolic behavior through pathway decomposition
|
Ip, Kuhn
|
|
2011
|
5 |
1 |
|
artikel
|
| 20 |
A new computational method to split large biochemical networks into coherent subnets
|
Verwoerd, Wynand S
|
|
2011
|
5 |
1 |
|
artikel
|
| 21 |
An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92
|
Charusanti, Pep
|
|
2011
|
5 |
1 |
|
artikel
|
| 22 |
An in silico approach combined with in vivo experiments enables the identification of a new protein whose overexpression can compensate for specific respiratory defects in Saccharomyces cerevisiae
|
Glatigny, Annie
|
|
2011
|
5 |
1 |
|
artikel
|
| 23 |
An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability
|
Wei, XN
|
|
2011
|
5 |
1 |
|
artikel
|
| 24 |
An integrative approach to inferring biologically meaningful gene modules
|
Cho, Ji-Hoon
|
|
2011
|
5 |
1 |
|
artikel
|
| 25 |
An organogenesis network-based comparative transcriptome analysis for understanding early human development in vivo and in vitro
|
Fang , Hai
|
|
2011
|
5 |
1 |
|
artikel
|
| 26 |
A protein network-guided screen for cell cycle regulators in Drosophila
|
Guest, Stephen T
|
|
2011
|
5 |
1 |
|
artikel
|
| 27 |
A retrosynthetic biology approach to metabolic pathway design for therapeutic production
|
Carbonell, Pablo
|
|
2011
|
5 |
1 |
|
artikel
|
| 28 |
A simple work flow for biologically inspired model reduction - application to early JAK-STAT signaling
|
Quaiser, Tom
|
|
2011
|
5 |
1 |
|
artikel
|
| 29 |
A stem cell niche dominance theorem
|
Wolkenhauer, Olaf
|
|
2011
|
5 |
1 |
|
artikel
|
| 30 |
Astrocyte - neuron lactate shuttle may boost more ATP supply to the neuron under hypoxic conditions - in silico study supported by in vitro expression data
|
Genc, Seda
|
|
2011
|
5 |
1 |
|
artikel
|
| 31 |
A systems biology approach to dynamic modeling and inter-subject variability of statin pharmacokinetics in human hepatocytes
|
Bucher, Joachim
|
|
2011
|
5 |
1 |
|
artikel
|
| 32 |
A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture
|
Haus, Sylvia
|
|
2011
|
5 |
1 |
|
artikel
|
| 33 |
A Systems Biology Strategy for Predicting Similarities and Differences of Drug Effects: Evidence for Drug-specific Modulation of Inflammation in Atherosclerosis
|
Kleemann, Robert
|
|
2011
|
5 |
1 |
|
artikel
|
| 34 |
A transcriptional analysis of carotenoid, chlorophyll and plastidial isoprenoid biosynthesis genes during development and osmotic stress responses in Arabidopsis thaliana
|
Meier, Stuart
|
|
2011
|
5 |
1 |
|
artikel
|
| 35 |
A transfer function approach to measuring cell inheritance
|
Rees, Paul
|
|
2011
|
5 |
1 |
|
artikel
|
| 36 |
Automated Bayesian model development for frequency detection in biological time series
|
Granqvist, Emma
|
|
2011
|
5 |
1 |
|
artikel
|
| 37 |
Biological interaction networks are conserved at the module level
|
Zinman, Guy E
|
|
2011
|
5 |
1 |
|
artikel
|
| 38 |
BiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies
|
Kozhenkov, Sergey
|
|
2011
|
5 |
1 |
|
artikel
|
| 39 |
Cell functional enviromics: Unravelling the function of environmental factors
|
Teixeira, Ana P
|
|
2011
|
5 |
1 |
|
artikel
|
| 40 |
Characterization the regulation of herpesvirus miRNAs from the view of human protein interaction network
|
Li, Zhenpeng
|
|
2011
|
5 |
1 |
|
artikel
|
| 41 |
Codon usage variability determines the correlation between proteome and transcriptome fold changes
|
Olivares-Hernández, Roberto
|
|
2011
|
5 |
1 |
|
artikel
|
| 42 |
Combined logical and data-driven models for linking signalling pathways to cellular response
|
Melas, Ioannis N
|
|
2011
|
5 |
1 |
|
artikel
|
| 43 |
Combining experimental and mathematical modeling to reveal mechanisms of macrophage-dependent left ventricular remodeling
|
Jin, Yu-Fang
|
|
2011
|
5 |
1 |
|
artikel
|
| 44 |
Communicating oscillatory networks: frequency domain analysis
|
Ihekwaba, Adaoha EC
|
|
2011
|
5 |
1 |
|
artikel
|
| 45 |
Comparison between elementary flux modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells
|
Beurton-Aimar, Marie
|
|
2011
|
5 |
1 |
|
artikel
|
| 46 |
Compartmentation of glycogen metabolism revealed from 13C isotopologue distributions
|
Marin de Mas, Igor
|
|
2011
|
5 |
1 |
|
artikel
|
| 47 |
Complex receptor-ligand dynamics control the response of the VEGF system to protease injury
|
Forsten-Williams, Kimberly
|
|
2011
|
5 |
1 |
|
artikel
|
| 48 |
Computational modelling elucidates the mechanism of ciliary regulation in health and disease
|
Kotov, Nikolay V
|
|
2011
|
5 |
1 |
|
artikel
|
| 49 |
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems
|
McDermott, Jason E
|
|
2011
|
5 |
1 |
|
artikel
|
| 50 |
Constructing stochastic models from deterministic process equations by propensity adjustment
|
Wu, Jialiang
|
|
2011
|
5 |
1 |
|
artikel
|
| 51 |
Construction of a computable cell proliferation network focused on non-diseased lung cells
|
Westra, Jurjen W
|
|
2011
|
5 |
1 |
|
artikel
|
| 52 |
Convergence of Logic of Cellular Regulation in Different Premalignant Cells by an Information Theoretic Approach
|
Kravchenko-Balasha, Nataly
|
|
2011
|
5 |
1 |
|
artikel
|
| 53 |
Critical assessment of human metabolic pathway databases: a stepping stone for future integration
|
Stobbe, Miranda D
|
|
2011
|
5 |
1 |
|
artikel
|
| 54 |
Deciphering causal and statistical relations of molecular aberrations and gene expressions in NCI-60 cell lines
|
Li, Shyh-Dar
|
|
2011
|
5 |
1 |
|
artikel
|
| 55 |
Decoding complex biological networks - tracing essential and modulatory parameters in complex and simplified models of the cell cycle
|
Eriksson, Olivia
|
|
2011
|
5 |
1 |
|
artikel
|
| 56 |
Decrease of energy spilling in Escherichia coli continuous cultures with rising specific growth rate and carbon wasting
|
Valgepea, Kaspar
|
|
2011
|
5 |
1 |
|
artikel
|
| 57 |
Degeneration of penicillin production in ethanol-limited chemostat cultivations of Penicillium chrysogenum: A systems biology approach
|
Douma, Rutger D
|
|
2011
|
5 |
1 |
|
artikel
|
| 58 |
DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules
|
Hendrix, Willam
|
|
2011
|
5 |
1 |
|
artikel
|
| 59 |
Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic processes
|
Diaz, Celine
|
|
2011
|
5 |
1 |
|
artikel
|
| 60 |
Difference in the distribution pattern of substrate enzymes in the metabolic network of Escherichia coli, according to chaperonin requirement
|
Takemoto, Kazuhiro
|
|
2011
|
5 |
1 |
|
artikel
|
| 61 |
Distinct configurations of protein complexes and biochemical pathways revealed by epistatic interaction network motifs
|
Casey, Fergal
|
|
2011
|
5 |
1 |
|
artikel
|
| 62 |
DnaA and the timing of chromosome replication in Es-cherichia coli as a function of growth rate
|
Grant, Matthew AA
|
|
2011
|
5 |
1 |
|
artikel
|
| 63 |
DomainRBF: a Bayesian regression approach to the prioritization of candidate domains for complex diseases
|
Zhang, Wangshu
|
|
2011
|
5 |
1 |
|
artikel
|
| 64 |
Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles
|
Aryal, Uma K
|
|
2011
|
5 |
1 |
|
artikel
|
| 65 |
Efficient characterization of high-dimensional parameter spaces for systems biology
|
Zamora-Sillero, Elías
|
|
2011
|
5 |
1 |
|
artikel
|
| 66 |
Elementary signaling modes predict the essentiality of signal transduction network components
|
Wang, Rui-Sheng
|
|
2011
|
5 |
1 |
|
artikel
|
| 67 |
Environmental versatility promotes modularity in genome-scale metabolic networks
|
Samal, Areejit
|
|
2011
|
5 |
1 |
|
artikel
|
| 68 |
Epidermal growth factor receptor mutation in combination with expression of MIG6 alters gefitinib sensitivity
|
Naruo, Yoshimi
|
|
2011
|
5 |
1 |
|
artikel
|
| 69 |
Expanding a dynamic flux balance model of yeast fermentation to genome-scale
|
Vargas, Felipe A
|
|
2011
|
5 |
1 |
|
artikel
|
| 70 |
Exploring metabolic pathway disruption in the subchronic phencyclidine model of schizophrenia with the Generalized Singular Value Decomposition
|
Xiao, Xiaolin
|
|
2011
|
5 |
1 |
|
artikel
|
| 71 |
Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics
|
Redestig, Henning
|
|
2011
|
5 |
1 |
|
artikel
|
| 72 |
Exploring pathway interactions in insulin resistant mouse liver
|
Kelder, Thomas
|
|
2011
|
5 |
1 |
|
artikel
|
| 73 |
Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction
|
Fang, Kechi
|
|
2011
|
5 |
1 |
|
artikel
|
| 74 |
Fluxomers: a new approach for 13C metabolic flux analysis
|
Srour, Orr
|
|
2011
|
5 |
1 |
|
artikel
|
| 75 |
Formation of VEGF isoform-specific spatial distributions governing angiogenesis: computational analysis
|
Vempati, Prakash
|
|
2011
|
5 |
1 |
|
artikel
|
| 76 |
From qualitative data to quantitative models: analysis of the phage shock protein stress response in Escherichia coli
|
Toni, Tina
|
|
2011
|
5 |
1 |
|
artikel
|
| 77 |
Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data
|
Krumsiek, Jan
|
|
2011
|
5 |
1 |
|
artikel
|
| 78 |
Gene networks associated with conditional fear in mice identified using a systems genetics approach
|
Park, Christopher C
|
|
2011
|
5 |
1 |
|
artikel
|
| 79 |
Gene Ontology Function prediction in Mollicutes using Protein-Protein Association Networks
|
Gómez, Antonio
|
|
2011
|
5 |
1 |
|
artikel
|
| 80 |
Genome-scale reconstruction and in silico analysis of the Ralstonia eutropha H16 for polyhydroxyalkanoate synthesis, lithoautotrophic growth, and 2-methyl citric acid production
|
Park, Jong Myoung
|
|
2011
|
5 |
1 |
|
artikel
|
| 81 |
Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1
|
Peyraud, Rémi
|
|
2011
|
5 |
1 |
|
artikel
|
| 82 |
Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043
|
Ates, Özlem
|
|
2011
|
5 |
1 |
|
artikel
|
| 83 |
Genomic phenotyping of the essential and non-essential yeast genome detects novel pathways for alkylation resistance
|
Svensson, J Peter
|
|
2011
|
5 |
1 |
|
artikel
|
| 84 |
Genotype networks, innovation, and robustness in sulfur metabolism
|
Matias Rodrigues, João F
|
|
2011
|
5 |
1 |
|
artikel
|
| 85 |
Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus
|
Overton, Ian M
|
|
2011
|
5 |
1 |
|
artikel
|
| 86 |
Global organization of protein complexome in the yeast Saccharomyces cerevisiae
|
Lee, Sang Hoon
|
|
2011
|
5 |
1 |
|
artikel
|
| 87 |
Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration
|
Herman, Dorota
|
|
2011
|
5 |
1 |
|
artikel
|
| 88 |
Heterogeneity reduces sensitivity of cell death for TNF-Stimuli
|
Schliemann, Monica
|
|
2011
|
5 |
1 |
|
artikel
|
| 89 |
Hierarchical Cluster-based Partial Least Squares Regression (HC-PLSR) is an efficient tool for metamodelling of nonlinear dynamic models
|
Tøndel, Kristin
|
|
2011
|
5 |
1 |
|
artikel
|
| 90 |
How neurons migrate: a dynamic in-silico model of neuronal migration in the developing cortex
|
Setty, Yaki
|
|
2011
|
5 |
1 |
|
artikel
|
| 91 |
How yeast re-programmes its transcriptional profile in response to different nutrient impulses
|
Dikicioglu, Duygu
|
|
2011
|
5 |
1 |
|
artikel
|
| 92 |
Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products
|
Carinhas, Nuno
|
|
2011
|
5 |
1 |
|
artikel
|
| 93 |
iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states
|
Bordbar, Aarash
|
|
2011
|
5 |
1 |
|
artikel
|
| 94 |
Identifying cancer biomarkers by network-constrained support vector machines
|
Chen, Li
|
|
2011
|
5 |
1 |
|
artikel
|
| 95 |
Identifying Tmem59 related gene regulatory network of mouse neural stem cell from a compendium of expression profiles
|
Zhang, Luwen
|
|
2011
|
5 |
1 |
|
artikel
|
| 96 |
Impact of receptor clustering on ligand binding
|
Caré, Bertrand R
|
|
2011
|
5 |
1 |
|
artikel
|
| 97 |
Improved functional overview of protein complexes using inferred epistatic relationships
|
Ryan, Colm
|
|
2011
|
5 |
1 |
|
artikel
|
| 98 |
Individualized therapy of HHT driven by network analysis of metabolomic profiles
|
Jamshidi, Neema
|
|
2011
|
5 |
1 |
|
artikel
|
| 99 |
Inference of complex biological networks: distinguishability issues and optimization-based solutions
|
Szederkényi, Gábor
|
|
2011
|
5 |
1 |
|
artikel
|
| 100 |
Inference of gene regulatory networks from time series by Tsallis entropy
|
Lopes , Fabrício Martins
|
|
2011
|
5 |
1 |
|
artikel
|
| 101 |
Inferring causal genomic alterations in breast cancer using gene expression data
|
Tran, Linh M
|
|
2011
|
5 |
1 |
|
artikel
|
| 102 |
Inferring pleiotropy by network analysis: linked diseases in the human PPI network
|
Nguyen, Thanh-Phuong
|
|
2011
|
5 |
1 |
|
artikel
|
| 103 |
Initial characterization of the human central proteome
|
Burkard, Thomas R
|
|
2011
|
5 |
1 |
|
artikel
|
| 104 |
In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer
|
Kaur, Mandeep
|
|
2011
|
5 |
1 |
|
artikel
|
| 105 |
Integrating systems biology models and biomedical ontologies
|
Hoehndorf, Robert
|
|
2011
|
5 |
1 |
|
artikel
|
| 106 |
Integrating transcriptomics and metabonomics to unravel modes-of-action of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in HepG2 cells
|
Jennen, Danyel
|
|
2011
|
5 |
1 |
|
artikel
|
| 107 |
Integration of lipidomics and transcriptomics data towards a systems biology model of sphingolipid metabolism
|
Gupta, Shakti
|
|
2011
|
5 |
1 |
|
artikel
|
| 108 |
Integrative network analysis reveals active microRNAs and their functions in gastric cancer
|
Tseng, Chien-Wei
|
|
2011
|
5 |
1 |
|
artikel
|
| 109 |
Interactions among oscillatory pathways in NF-kappa B signaling
|
Wang, Yunjiao
|
|
2011
|
5 |
1 |
|
artikel
|
| 110 |
In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps
|
Kandhavelu, Meenakshisundaram
|
|
2011
|
5 |
1 |
|
artikel
|
| 111 |
iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network
|
Imam, Saheed
|
|
2011
|
5 |
1 |
|
artikel
|
| 112 |
Is RNA-dependent RNA polymerase essential for transposon control?
|
Crombach, Anton
|
|
2011
|
5 |
1 |
|
artikel
|
| 113 |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity
|
Wynn, Michelle L
|
|
2011
|
5 |
1 |
|
artikel
|
| 114 |
Kinetic modeling and exploratory numerical simulation of chloroplastic starch degradation
|
Nag, Ambarish
|
|
2011
|
5 |
1 |
|
artikel
|
| 115 |
Knowledge management for systems biology a general and visually driven framework applied to translational medicine
|
Maier, Dieter
|
|
2011
|
5 |
1 |
|
artikel
|
| 116 |
Large-scale analysis of expression signatures reveals hidden links among diverse cellular processes
|
Ge, Steven X
|
|
2011
|
5 |
1 |
|
artikel
|
| 117 |
Mathematical model of uptake and metabolism of arsenic(III) in human hepatocytes - Incorporation of cellular antioxidant response and threshold-dependent behavior
|
Stamatelos, Spyros K
|
|
2011
|
5 |
1 |
|
artikel
|
| 118 |
Mechanisms of gap gene expression canalization in the Drosophila blastoderm
|
Gursky, Vitaly V
|
|
2011
|
5 |
1 |
|
artikel
|
| 119 |
MEMOSys: Bioinformatics platform for genome-scale metabolic models
|
Pabinger, Stephan
|
|
2011
|
5 |
1 |
|
artikel
|
| 120 |
Meta-analysis of estrogen response in MCF-7 distinguishes early target genes involved in signaling and cell proliferation from later target genes involved in cell cycle and DNA repair
|
Jagannathan, Vidhya
|
|
2011
|
5 |
1 |
|
artikel
|
| 121 |
Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteria
|
Hädicke, Oliver
|
|
2011
|
5 |
1 |
|
artikel
|
| 122 |
Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052
|
Milne, Caroline B
|
|
2011
|
5 |
1 |
|
artikel
|
| 123 |
Metabolic reconstruction of the archaeon methanogen Methanosarcina Acetivorans
|
Satish Kumar, Vinay
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2011
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artikel
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| 124 |
Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach
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Fukushima, Atsushi
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2011
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artikel
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| 125 |
Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus
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Sorokina, Oksana
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2011
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1 |
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artikel
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| 126 |
MicroRNAs coordinately regulate protein complexes
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Sass, Steffen
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2011
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5 |
1 |
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artikel
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| 127 |
MiR-206-mediated dynamic mechanism of the mammalian circadian clock
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Zhou, Wei
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2011
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5 |
1 |
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artikel
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| 128 |
Model-based clustering reveals vitamin D dependent multi-centrality hubs in a network of vitamin-related proteins
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Nguyen, Thanh-Phuong
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2011
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5 |
1 |
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artikel
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| 129 |
Modeling RNA interference in mammalian cells
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Cuccato, Giulia
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2011
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5 |
1 |
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artikel
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| 130 |
Modeling the Calvin-Benson cycle
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Jablonsky, Jiri
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2011
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5 |
1 |
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artikel
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| 131 |
Modeling the effector - regulatory T cell cross-regulation reveals the intrinsic character of relapses in Multiple Sclerosis
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Vélez de Mendizábal, Nieves
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2011
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5 |
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artikel
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| 132 |
Modeling the evolution of a classic genetic switch
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Josephides, Christos
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2011
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1 |
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artikel
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| 133 |
Modeling the NF-κB mediated inflammatory response predicts cytokine waves in tissue
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Yde, Pernille
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2011
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artikel
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| 134 |
Models of sequestration and receptor cross-talk for explaining multiple mutants in plant stem cell regulation
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Sahlin, Patrik
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2011
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artikel
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| 135 |
Modularity-based credible prediction of disease genes and detection of disease subtypes on the phenotype-gene heterogeneous network
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Yao, Xin
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2011
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artikel
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| 136 |
More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli
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Göhler, Anna-Katharina
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2011
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1 |
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artikel
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| 137 |
Multi-objective optimization of enzyme manipulations in metabolic networks considering resilience effects
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Wu, Wu-Hsiung
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2011
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5 |
1 |
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artikel
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| 138 |
Negative auto-regulation increases the input dynamic-range of the arabinose system of Escherichia coli
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Madar, Daniel
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2011
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5 |
1 |
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artikel
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| 139 |
Network analysis of microRNAs and their regulation in human ovarian cancer
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Schmeier, Sebastian
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2011
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5 |
1 |
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artikel
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| 140 |
Network-based scoring system for genome-scale metabolic reconstructions
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Serrano, M Ángeles
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2011
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5 |
1 |
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artikel
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| 141 |
Noise and crosstalk in two quorum-sensing inputs of Vibrio fischeri
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Pérez, Pablo D
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2011
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5 |
1 |
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artikel
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| 142 |
Noise characteristics of the Escherichia coli rotary motor
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Clausznitzer, Diana
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2011
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5 |
1 |
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artikel
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| 143 |
Noise filtering tradeoffs in spatial gradient sensing and cell polarization response
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Chou, Ching-Shan
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2011
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5 |
1 |
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artikel
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| 144 |
On the architecture of cell regulation networks
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Lan, Yueheng
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2011
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5 |
1 |
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artikel
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| 145 |
Optimality and evolution of transcriptionally regulated gene expression
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Poelwijk, Frank J
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2011
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5 |
1 |
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artikel
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| 146 |
Parameter adaptations during phenotype transitions in progressive diseases
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Tiemann, Christian A
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2011
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5 |
1 |
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artikel
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| 147 |
Parameter estimation in systems biology models using spline approximation
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Zhan, Choujun
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2011
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5 |
1 |
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artikel
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| 148 |
Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis
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Tashkova, Katerina
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2011
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5 |
1 |
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artikel
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| 149 |
Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks
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Alvarez, Angel
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2011
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5 |
1 |
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artikel
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| 150 |
PathCase-SB architecture and database design
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Cakmak, Ali
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2011
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5 |
1 |
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artikel
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| 151 |
Pharmacokinetics and pharmacodynamics of VEGF-neutralizing antibodies
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Finley, Stacey D
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2011
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5 |
1 |
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artikel
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| 152 |
Phenotypic heterogeneity in mycobacterial stringent response
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Ghosh, Sayantari
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2011
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5 |
1 |
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artikel
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| 153 |
plasticity of TGF-β signaling
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Cellière, Geraldine
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2011
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5 |
1 |
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artikel
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| 154 |
Predicting the points of interaction of small molecules in the NF-κB pathway
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Patel, Yogendra
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2011
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5 |
1 |
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artikel
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| 155 |
Predictive integration of gene functional similarity and co-expression defines treatment response of endothelial progenitor cells
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Azuaje, Francisco J
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2011
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5 |
1 |
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artikel
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| 156 |
Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network
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Liu, Hui
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2011
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5 |
1 |
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artikel
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| 157 |
Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination
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Ferreira, Ana R
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2011
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5 |
1 |
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artikel
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| 158 |
Proteomic patterns of cervical cancer cell lines, a network perspective
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Higareda-Almaraz, Juan Carlos
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2011
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5 |
1 |
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artikel
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| 159 |
Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes
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Chu, Jen-hwa
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2011
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5 |
1 |
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artikel
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| 160 |
Quantitative maps of genetic interactions in yeast - Comparative evaluation and integrative analysis
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Lindén, Rolf O
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2011
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1 |
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artikel
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| 161 |
Recipes and mechanisms of cellular reprogramming: a case study on budding yeast Saccharomyces cerevisiae
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Ding, Shengchao
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2011
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5 |
1 |
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artikel
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| 162 |
Reconstruction of extended Petri nets from time series data and its application to signal transduction and to gene regulatory networks
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Durzinsky, Markus
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2011
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5 |
1 |
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artikel
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| 163 |
Regulation of the yeast metabolic cycle by transcription factors with periodic activities
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Rao, Aliz R
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2011
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5 |
1 |
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artikel
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| 164 |
Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network
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Wang, Jin
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2011
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5 |
1 |
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artikel
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| 165 |
Removing bias against membrane proteins in interaction networks
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Brito, Glauber C
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2011
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5 |
1 |
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artikel
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| 166 |
Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language
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Waltemath, Dagmar
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2011
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1 |
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artikel
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| 167 |
Robust Control of PEP Formation Rate in the Carbon Fixation Pathway of C4 Plants by a Bi-functional Enzyme
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Hart, Yuval
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2011
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5 |
1 |
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artikel
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| 168 |
Rule-based multi-level modeling of cell biological systems
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Maus, Carsten
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2011
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5 |
1 |
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artikel
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| 169 |
Simulating Quantitative Cellular Responses Using Asynchronous Threshold Boolean Network Ensembles
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Jack, John
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2011
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5 |
1 |
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artikel
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| 170 |
SPABBATS: A pathway-discovery method based on Boolean satisfiability that facilitates the characterization of suppressor mutants
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Flórez, Lope A
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2011
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5 |
1 |
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artikel
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| 171 |
Statistical Inference Methods for Sparse Biological Time Series Data
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Ndukum, Juliet
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2011
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5 |
1 |
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artikel
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| 172 |
Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models
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Pozo, Carlos
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2011
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5 |
1 |
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artikel
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| 173 |
Stochastic adaptation and fold-change detection: from single-cell to population behavior
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Marquez-Lago, Tatiana T
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2011
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1 |
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artikel
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| 174 |
Stochastic simulations of the tetracycline operon
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Biliouris, Konstantinos
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2011
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5 |
1 |
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artikel
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| 175 |
Structurally robust biological networks
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Blanchini, Franco
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2011
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5 |
1 |
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artikel
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| 176 |
Symbolic flux analysis for genome-scale metabolic networks
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Schryer, David W
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2011
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5 |
1 |
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artikel
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| 177 |
Systematic quantitative characterization of cellular responses induced by multiple signals
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Al-Shyoukh, Ibrahim
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2011
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5 |
1 |
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artikel
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| 178 |
Systemic remodeling of the redox regulatory network due to RNAi perturbations of glutaredoxin 1, thioredoxin 1, and glucose-6-phosphate dehydrogenase
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Kippner, Linda E
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2011
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5 |
1 |
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artikel
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| 179 |
Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella
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Yoon, Hyunjin
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2011
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5 |
1 |
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artikel
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| 180 |
Systems biological approach on neurological disorders: a novel molecular connectivity to aging and psychiatric diseases
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Ahmed, Shiek SSJ
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2011
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5 |
1 |
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artikel
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| 181 |
Systems biology applied to vaccine and immunotherapy development
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Buonaguro, Luigi
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2011
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5 |
1 |
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artikel
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| 182 |
Systems biology approach to identify transcriptome reprogramming and candidate microRNA targets during the progression of polycystic kidney disease
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Pandey, Priyanka
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2011
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5 |
1 |
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artikel
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| 183 |
Systems biology of bacterial nitrogen fixation: High-throughput technology and its integrative description with constraint-based modeling
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Resendis-Antonio, Osbaldo
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2011
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5 |
1 |
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artikel
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| 184 |
Systems mapping: how to improve the genetic mapping of complex traits through design principles of biological systems
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Wu, Rongling
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2011
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artikel
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| 185 |
TF-Cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM)
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Nie, Jeff
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2011
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5 |
1 |
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artikel
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| 186 |
The coupling of pathways and processes through shared components
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Seaton, Daniel D
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2011
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5 |
1 |
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artikel
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| 187 |
The evolution of metabolic networks of E. coli
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Baumler, David J
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2011
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5 |
1 |
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artikel
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| 188 |
The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions
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Rolfsson, Ottar
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2011
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1 |
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artikel
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| 189 |
The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene
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Silva-Rocha, Rafael
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2011
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artikel
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| 190 |
The logic of kinetic regulation in the thioredoxin system
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Pillay, Ché S
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2011
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5 |
1 |
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artikel
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| 191 |
Theoretical basis of the community effect in development
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Saka, Yasushi
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2011
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5 |
1 |
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artikel
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| 192 |
Thermodynamically consistent model calibration in chemical kinetics
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Jenkinson, Garrett
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2011
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artikel
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| 193 |
The role of actin in capacitation-related signaling: an in silico and in vitro study
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Bernabò, Nicola
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2011
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artikel
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| 194 |
The whole-organism heavy chain B cell repertoire from Zebrafish self-organizes into distinct network features
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Ben-Hamo, Rotem
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2011
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5 |
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artikel
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| 195 |
TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks
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Jensen, Paul A
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2011
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artikel
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| 196 |
Time-resolved in silico modeling of fine-tuned cAMP signaling in platelets: feedback loops, titrated phosphorylations and pharmacological modulation
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Wangorsch, Gaby
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2011
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artikel
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| 197 |
Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization
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Luo, Weijun
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2011
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5 |
1 |
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artikel
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| 198 |
Transcriptional robustness and protein interactions are associated in yeast
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Bekaert, Michaël
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2011
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artikel
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| 199 |
Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions
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Li, Bo
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2011
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5 |
1 |
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artikel
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| 200 |
Understanding dynamics using sensitivity analysis: caveat and solution
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Perumal, Thanneer M
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2011
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artikel
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| 201 |
Unexpected complexity of the Reef-Building Coral Acropora millepora transcription factor network
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Ryu, Taewoo
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2011
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1 |
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artikel
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| 202 |
Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome
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Larsen, Peter E
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2011
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1 |
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artikel
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| 203 |
When the human viral infectome and diseasome networks collide: towards a systems biology platform for the aetiology of human diseases
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Navratil, Vincent
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2011
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5 |
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