| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A basis for a visual language for describing, archiving and analyzing functional models of complex biological systems
|
Cook, Daniel L
|
|
2001
|
|
4 |
p. research0012.1-research0012.10
|
artikel
|
| 2 |
A classification based framework for quantitative description of large-scale microarray data
|
Sangurdekar, Dipen P
|
|
2006
|
|
4 |
|
artikel
|
| 3 |
Adenovirus type 5 exerts genome-wide control over cellular programs governing proliferation, quiescence, and survival
|
Miller, Daniel L
|
|
2007
|
|
4 |
|
artikel
|
| 4 |
Advances in understanding genome maintenance
|
Miller, Kyle M
|
|
2010
|
|
4 |
|
artikel
|
| 5 |
A genomic approach to investigate developmental cell death in woody tissues of Populus trees
|
Moreau, Charleen
|
|
2005
|
|
4 |
|
artikel
|
| 6 |
A major zebrafish polymorphism resource for genetic mapping
|
Bradley, Kevin M
|
|
2007
|
|
4 |
|
artikel
|
| 7 |
A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response
|
Schwartz, Scott
|
|
2012
|
|
4 |
|
artikel
|
| 8 |
Analysis and functional classification of transcripts from the nematode Meloidogyne incognita
|
McCarter, James P
|
|
2003
|
|
4 |
|
artikel
|
| 9 |
Analysis of prolactin-modulated gene expression profiles during the Nb2 cell cycle using differential screening techniques
|
Bole-Feysot, Christine
|
|
2000
|
|
4 |
p. research0008.1-research0008.15
|
artikel
|
| 10 |
Ancient papillomavirus-host co-speciation in Felidae
|
Rector, Annabel
|
|
2007
|
|
4 |
|
artikel
|
| 11 |
An enigmatic satellite
|
Amos, William
|
|
2011
|
|
4 |
|
artikel
|
| 12 |
An evolutionary and functional assessment of regulatory network motifs
|
Mazurie, Aurélien
|
|
2005
|
|
4 |
|
artikel
|
| 13 |
An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations
|
Tan, John C
|
|
2011
|
|
4 |
|
artikel
|
| 14 |
A novel sodium bicarbonate cotransporter-like gene in an ancient duplicated region: SLC4A9 at 5q31
|
Lipovich, Leonard
|
|
2001
|
|
4 |
p. research0011.1-research0011.13
|
artikel
|
| 15 |
A pathway sensor for genome-wide screens of intracellular proteolytic cleavage
|
Ketteler, Robin
|
|
2008
|
|
4 |
|
artikel
|
| 16 |
A quantitative literature-curated gold standard for kinase-substrate pairs
|
Sharifpoor, Sara
|
|
2011
|
|
4 |
|
artikel
|
| 17 |
A recessive genetic screen for host factors required for retroviral infection in a library of insertionally mutated Blm-deficient embryonic stem cells
|
Wang, Wei
|
|
2007
|
|
4 |
|
artikel
|
| 18 |
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
|
Knight, Robin D
|
|
2001
|
|
4 |
p. research0010.1-research0010.13
|
artikel
|
| 19 |
Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes
|
van het Hoog, Marco
|
|
2007
|
|
4 |
|
artikel
|
| 20 |
A third-generation microsatellite-based linkage map of the honey bee, Apis mellifera, and its comparison with the sequence-based physical map
|
Solignac, Michel
|
|
2007
|
|
4 |
|
artikel
|
| 21 |
A transcriptional timetable of autumn senescence
|
Andersson, Anders
|
|
2004
|
|
4 |
|
artikel
|
| 22 |
A whole-genome assembly of the domestic cow, Bos taurus
|
Zimin, Aleksey V
|
|
2009
|
|
4 |
|
artikel
|
| 23 |
Benchmarking ortholog identification methods using functional genomics data
|
Hulsen, Tim
|
|
2006
|
|
4 |
|
artikel
|
| 24 |
Characterization of DXZ4 conservation in primates implies important functional roles for CTCF binding, array expression and tandem repeat organization on the X chromosome
|
McLaughlin, Christine R
|
|
2011
|
|
4 |
|
artikel
|
| 25 |
Choosing the right path: enhancement of biologically relevant sets of genes or proteins using pathway structure
|
Thomas, Reuben
|
|
2009
|
|
4 |
|
artikel
|
| 26 |
Chromatin conformation signatures of cellular differentiation
|
Fraser, James
|
|
2009
|
|
4 |
|
artikel
|
| 27 |
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
|
Tirosh, Itay
|
|
2007
|
|
4 |
|
artikel
|
| 28 |
Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins
|
Hesselberth, Jay R
|
|
2006
|
|
4 |
|
artikel
|
| 29 |
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
|
Kubicek, Christian P
|
|
2011
|
|
4 |
|
artikel
|
| 30 |
Comparative genomics of gene-family size in closely related bacteria
|
Pushker, Ravindra
|
|
2004
|
|
4 |
|
artikel
|
| 31 |
Comparative genomics using Fugu reveals insights into regulatory subfunctionalization
|
Woolfe, Adam
|
|
2007
|
|
4 |
|
artikel
|
| 32 |
Complex-trait analysis in plants
|
Mitchell-Olds, Thomas
|
|
2010
|
|
4 |
|
artikel
|
| 33 |
Conservation of tandem stop codons in yeasts
|
Liang, Han
|
|
2005
|
|
4 |
|
artikel
|
| 34 |
Conservation of the binding site for the arginine repressor in all bacterial lineages
|
Makarova, Kira S
|
|
2001
|
|
4 |
p. research0013.1-research0013.8
|
artikel
|
| 35 |
Contribution of transcriptional regulation to natural variations in Arabidopsis
|
Chen, Wenqiong J
|
|
2005
|
|
4 |
|
artikel
|
| 36 |
CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes
|
Zhang, Quan
|
|
2013
|
|
4 |
|
artikel
|
| 37 |
Deafblindness in French Canadians from Quebec: a predominant founder mutation in the USH1C gene provides the first genetic link with the Acadian population
|
Ebermann, Inga
|
|
2007
|
|
4 |
|
artikel
|
| 38 |
Deciphering the molecular machinery of stem cells: a look at the neoblast gene expression profile
|
Rossi, Leonardo
|
|
2007
|
|
4 |
|
artikel
|
| 39 |
Derivation of genetic interaction networks from quantitative phenotype data
|
Drees, Becky L
|
|
2005
|
|
4 |
|
artikel
|
| 40 |
Development of a 950-gene DNA array for examining gene expression patterns in mouse testis
|
Rockett, John C
|
|
2001
|
|
4 |
p. research0014.1-research0014.9
|
artikel
|
| 41 |
Discovery of permuted and recently split transfer RNAs in Archaea
|
Chan, Patricia P
|
|
2011
|
|
4 |
|
artikel
|
| 42 |
Discovery of tissue-specific exons using comprehensive human exon microarrays
|
Clark, Tyson A
|
|
2007
|
|
4 |
|
artikel
|
| 43 |
DNA binding specificities of the long zinc-finger recombination protein PRDM9
|
Billings, Timothy
|
|
2013
|
|
4 |
|
artikel
|
| 44 |
DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex
|
Schaack, Sarah
|
|
2010
|
|
4 |
|
artikel
|
| 45 |
Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays
|
Naef, Felix
|
|
2002
|
|
4 |
p. research0018.1-research0018.11
|
artikel
|
| 46 |
EMu: probabilistic inference of mutational processes and their localization in the cancer genome
|
Fischer, Andrej
|
|
2013
|
|
4 |
|
artikel
|
| 47 |
Enriching for direct regulatory targets in perturbed gene-expression profiles
|
Tringe, Susannah G
|
|
2004
|
|
4 |
|
artikel
|
| 48 |
Erect wing regulates synaptic growth in Drosophila by integration of multiple signaling pathways
|
Haussmann, Irmgard U
|
|
2008
|
|
4 |
|
artikel
|
| 49 |
Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome
|
Kosarev, Peter
|
|
2002
|
|
4 |
p. research0016.1-research0016.12
|
artikel
|
| 50 |
Evolutionary conservation of otd/Otx2 transcription factor action: a genome-wide microarray analysis in Drosophila
|
Montalta-He, Haiqiong
|
|
2002
|
|
4 |
p. research0015.1-research0015.15
|
artikel
|
| 51 |
Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs
|
Panjkovich, Alejandro
|
|
2008
|
|
4 |
|
artikel
|
| 52 |
Evolutionary rates and centrality in the yeast gene regulatory network
|
Jovelin, Richard
|
|
2009
|
|
4 |
|
artikel
|
| 53 |
Evolution of protein complexes by duplication of homomeric interactions
|
Pereira-Leal, Jose B
|
|
2007
|
|
4 |
|
artikel
|
| 54 |
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
|
Severin, Jessica
|
|
2009
|
|
4 |
|
artikel
|
| 55 |
Flux balance analysis accounting for metabolite dilution
|
Benyamini, Tomer
|
|
2010
|
|
4 |
|
artikel
|
| 56 |
Functional dissection of the ash2 and ash1 transcriptomes provides insights into the transcriptional basis of wing phenotypes and reveals conserved protein interactions
|
Beltran, Sergi
|
|
2007
|
|
4 |
|
artikel
|
| 57 |
Gene expression patterns during adaptation of a helminth parasite to different environmental niches
|
Jolly, Emmitt R
|
|
2007
|
|
4 |
|
artikel
|
| 58 |
Genes regulated by estrogen in breast tumor cells in vitro are similarly regulated in vivo in tumor xenografts and human breast tumors
|
Creighton, Chad J
|
|
2006
|
|
4 |
|
artikel
|
| 59 |
Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel
|
Simonis, Marieke
|
|
2012
|
|
4 |
|
artikel
|
| 60 |
Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence
|
Cheung, Joseph
|
|
2003
|
|
4 |
|
artikel
|
| 61 |
Genome-wide identification and characterization of replication origins by deep sequencing
|
Xu, Jia
|
|
2012
|
|
4 |
|
artikel
|
| 62 |
Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation
|
Kubosaki, Atsutaka
|
|
2009
|
|
4 |
|
artikel
|
| 63 |
Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana
|
Wang, Xiu-Jie
|
|
2005
|
|
4 |
|
artikel
|
| 64 |
Genome-wide survey of post-meiotic segregation during yeast recombination
|
Mancera, Eugenio
|
|
2011
|
|
4 |
|
artikel
|
| 65 |
Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation
|
Berthon, Jonathan
|
|
2008
|
|
4 |
|
artikel
|
| 66 |
GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
|
Mermel, Craig H
|
|
2011
|
|
4 |
|
artikel
|
| 67 |
Global analyses of mRNA translational control during early Drosophila embryogenesis
|
Qin, Xiaoli
|
|
2007
|
|
4 |
|
artikel
|
| 68 |
Global mRNA decay analysis at single nucleotide resolution reveals segmental and positional degradation patterns in a Gram-positive bacterium
|
Kristoffersen, Simen M
|
|
2012
|
|
4 |
|
artikel
|
| 69 |
Global transcriptome analysis of murine embryonic stem cell-derived cardiomyocytes
|
Doss, Michael Xavier
|
|
2007
|
|
4 |
|
artikel
|
| 70 |
GoMiner: a resource for biological interpretation of genomic and proteomic data
|
Zeeberg, Barry R
|
|
2003
|
|
4 |
|
artikel
|
| 71 |
Haplotypic analysis of the TNF locus by association efficiency and entropy
|
Ackerman, Hans
|
|
2003
|
|
4 |
|
artikel
|
| 72 |
High levels of RNA-editing site conservation amongst 15 laboratory mouse strains
|
Danecek, Petr
|
|
2012
|
|
4 |
|
artikel
|
| 73 |
High recombination rates and hotspots in a Plasmodium falciparum genetic cross
|
Jiang, Hongying
|
|
2011
|
|
4 |
|
artikel
|
| 74 |
Histone deacetylase inhibition accelerates the early events of stem cell differentiation: transcriptomic and epigenetic analysis
|
Karantzal, Efthimia
|
|
2008
|
|
4 |
|
artikel
|
| 75 |
Hotspots of mammalian chromosomal evolution
|
Bailey, Jeffrey A
|
|
2004
|
|
4 |
|
artikel
|
| 76 |
Human-macaque comparisons illuminate variation in neutral substitution rates
|
Tyekucheva, Svitlana
|
|
2008
|
|
4 |
|
artikel
|
| 77 |
Identification and functional characterization of cis-regulatory elements in the apicomplexan parasite Toxoplasma gondii
|
Mullapudi, Nandita
|
|
2009
|
|
4 |
|
artikel
|
| 78 |
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
|
Tsai, Isheng J
|
|
2010
|
|
4 |
|
artikel
|
| 79 |
Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression
|
Ma, Shisong
|
|
2007
|
|
4 |
|
artikel
|
| 80 |
Interactions between immunity, proliferation and molecular subtype in breast cancer prognosis
|
Nagalla, Srikanth
|
|
2013
|
|
4 |
|
artikel
|
| 81 |
jMOSAiCS: joint analysis of multiple ChIP-seq datasets
|
Zeng, Xin
|
|
2013
|
|
4 |
|
artikel
|
| 82 |
MatchMiner: a tool for batch navigation among gene and gene product identifiers
|
Bussey, Kimberly J
|
|
2003
|
|
4 |
|
artikel
|
| 83 |
Mediation of Drosophila autosomal dosage effects and compensation by network interactions
|
Malone, John H
|
|
2012
|
|
4 |
|
artikel
|
| 84 |
Membrane transporters and protein traffic networks differentially affecting metal tolerance: a genomic phenotyping study in yeast
|
Ruotolo, Roberta
|
|
2008
|
|
4 |
|
artikel
|
| 85 |
Microbial co-habitation and lateral gene transfer: what transposases can tell us
|
Hooper, Sean D
|
|
2009
|
|
4 |
|
artikel
|
| 86 |
miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
|
Hendrix, David
|
|
2010
|
|
4 |
|
artikel
|
| 87 |
ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues?
|
Van Loo, Peter
|
|
2008
|
|
4 |
|
artikel
|
| 88 |
Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes
|
Paul, Sandip
|
|
2008
|
|
4 |
|
artikel
|
| 89 |
Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis
|
Gan, Qiang
|
|
2010
|
|
4 |
|
artikel
|
| 90 |
Mutation patterns of amino acid tandem repeats in the human proteome
|
Mularoni, Loris
|
|
2006
|
|
4 |
|
artikel
|
| 91 |
Natural selection of protein structural and functional properties: a single nucleotide polymorphism perspective
|
Liu, Jinfeng
|
|
2008
|
|
4 |
|
artikel
|
| 92 |
New feature subset selection procedures for classification of expression profiles
|
Bø, Trond Hellem
|
|
2002
|
|
4 |
p. research0017.1-research0017.11
|
artikel
|
| 93 |
Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics
|
Fermin, Damian
|
|
2006
|
|
4 |
|
artikel
|
| 94 |
Observations on shifted cumulative regulation
|
Ye, Chao
|
|
2011
|
|
4 |
|
artikel
|
| 95 |
Optimized design and data analysis of tag-based cytosine methylation assays
|
Suzuki, Masako
|
|
2010
|
|
4 |
|
artikel
|
| 96 |
Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling
|
Vijayendran, Chandran
|
|
2008
|
|
4 |
|
artikel
|
| 97 |
Permutation-validated principal components analysis of microarray data
|
Landgrebe, Jobst
|
|
2002
|
|
4 |
p. research0019.1-research0019.11
|
artikel
|
| 98 |
Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors
|
Casado, Pedro
|
|
2013
|
|
4 |
|
artikel
|
| 99 |
Phylogenetic assessment of alignments reveals neglected tree signal in gaps
|
Dessimoz, Christophe
|
|
2010
|
|
4 |
|
artikel
|
| 100 |
Phylogenetic detection of numerous gene duplications shared by animals, fungi and plants
|
Zhou, Xiaofan
|
|
2010
|
|
4 |
|
artikel
|
| 101 |
Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones
|
Gomez, Shawn M
|
|
2005
|
|
4 |
|
artikel
|
| 102 |
p53 induces transcriptional and translational programs to suppress cell proliferation and growth
|
Loayza-Puch, Fabricio
|
|
2013
|
|
4 |
|
artikel
|
| 103 |
Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae
|
Fay, Justin C
|
|
2004
|
|
4 |
|
artikel
|
| 104 |
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
|
Gorodkin, Jan
|
|
2007
|
|
4 |
|
artikel
|
| 105 |
Prediction of Saccharomyces cerevisiae replication origins
|
Breier, Adam M
|
|
2004
|
|
4 |
|
artikel
|
| 106 |
Promoter features related to tissue specificity as measured by Shannon entropy
|
Schug, Jonathan
|
|
2005
|
|
4 |
|
artikel
|
| 107 |
ProSplicer: a database of putative alternative splicing information derived from protein, mRNA and expressed sequence tag sequence data
|
Huang, Hsien-Da
|
|
2003
|
|
4 |
|
artikel
|
| 108 |
Quantitative genomics of starvation stress resistance in Drosophila
|
Harbison, Susan T
|
|
2005
|
|
4 |
|
artikel
|
| 109 |
Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity
|
Sasagawa, Yohei
|
|
2013
|
|
4 |
|
artikel
|
| 110 |
RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations
|
Castro, Mauro AA
|
|
2012
|
|
4 |
|
artikel
|
| 111 |
Reference based annotation with GeneMapper
|
Chatterji, Sourav
|
|
2006
|
|
4 |
|
artikel
|
| 112 |
Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast
|
Lackner, Daniel H
|
|
2012
|
|
4 |
|
artikel
|
| 113 |
Restriction Site Tiling Analysis: accurate discovery and quantitative genotyping of genome-wide polymorphisms using nucleotide arrays
|
Pespeni, Melissa H
|
|
2010
|
|
4 |
|
artikel
|
| 114 |
RNA editing of human microRNAs
|
Blow, Matthew J
|
|
2006
|
|
4 |
|
artikel
|
| 115 |
Small variable segments constitute a major type of diversity of bacterial genomes at the species level
|
Touzain, Fabrice
|
|
2010
|
|
4 |
|
artikel
|
| 116 |
Statistical tools for synthesizing lists of differentially expressed features in related experiments
|
Blangiardo, Marta
|
|
2007
|
|
4 |
|
artikel
|
| 117 |
Systematic biases in DNA copy number originate from isolation procedures
|
van Heesch, Sebastiaan
|
|
2013
|
|
4 |
|
artikel
|
| 118 |
The alpha/beta fold uracil DNA glycosylases: a common origin with diverse fates
|
Aravind, L
|
|
2000
|
|
4 |
p. research0007.1-research0007.8
|
artikel
|
| 119 |
The blue marble
|
Petsko, Gregory A
|
|
2011
|
|
4 |
|
artikel
|
| 120 |
The bovine lactation genome: insights into the evolution of mammalian milk
|
Lemay, Danielle G
|
|
2009
|
|
4 |
|
artikel
|
| 121 |
The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants
|
Crossman, Lisa C
|
|
2008
|
|
4 |
|
artikel
|
| 122 |
The cullin protein family
|
Sarikas, Antonio
|
|
2011
|
|
4 |
|
artikel
|
| 123 |
The developmental expression dynamics of Drosophila melanogaster transcription factors
|
Adryan, Boris
|
|
2010
|
|
4 |
|
artikel
|
| 124 |
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
|
Kawaji, Hideya
|
|
2009
|
|
4 |
|
artikel
|
| 125 |
The genome of Rhizobium leguminosarum has recognizable core and accessory components
|
Young, J Peter W
|
|
2006
|
|
4 |
|
artikel
|
| 126 |
The microbial selenoproteome of the Sargasso Sea
|
Zhang, Yan
|
|
2005
|
|
4 |
|
artikel
|
| 127 |
The regulatory content of intergenic DNA shapes genome architecture
|
Nelson, Craig E
|
|
2004
|
|
4 |
|
artikel
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| 128 |
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