| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes
|
Yang, Hsiao-Pei
|
|
2008
|
|
2 |
|
artikel
|
| 2 |
Accelerated evolution associated with genome reduction in a free-living prokaryote
|
Dufresne, Alexis
|
|
2005
|
|
2 |
|
artikel
|
| 3 |
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
|
Koonin, Eugene V
|
|
2004
|
|
2 |
|
artikel
|
| 4 |
A database for the provisional identification of species using only genotypes: web-based genome profiling
|
Watanabe, Takehiro
|
|
2002
|
|
2 |
p. research0010.1-research0010.8
|
artikel
|
| 5 |
A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration
|
Looso, Mario
|
|
2013
|
|
2 |
|
artikel
|
| 6 |
A fuzzy gene expression-based computational approach improves breast cancer prognostication
|
Haibe-Kains, Benjamin
|
|
2010
|
|
2 |
|
artikel
|
| 7 |
A genome-wide transcriptional activity survey of rice transposable element-related genes
|
Jiao, Yuling
|
|
2007
|
|
2 |
|
artikel
|
| 8 |
Aging of blood can be tracked by DNA methylation changes at just three CpG sites
|
Weidner, Carola Ingrid
|
|
2014
|
|
2 |
|
artikel
|
| 9 |
All your base: a fast and accurate probabilistic approach to base calling
|
Massingham, Tim
|
|
2012
|
|
2 |
|
artikel
|
| 10 |
Alternate transcription of the Toll-like receptor signaling cascade
|
Wells, Christine A
|
|
2006
|
|
2 |
|
artikel
|
| 11 |
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
|
Aird, Daniel
|
|
2011
|
|
2 |
|
artikel
|
| 12 |
Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes
|
Engström, Pär G
|
|
2008
|
|
2 |
|
artikel
|
| 13 |
A network perspective on the evolution of metabolism by gene duplication
|
Díaz-Mejía, Juan Javier
|
|
2007
|
|
2 |
|
artikel
|
| 14 |
An ontology for cell types
|
Bard, Jonathan
|
|
2005
|
|
2 |
|
artikel
|
| 15 |
An unappreciated role for RNA surveillance
|
Hillman, R Tyler
|
|
2004
|
|
2 |
|
artikel
|
| 16 |
A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454
|
Lennon, Niall J
|
|
2010
|
|
2 |
|
artikel
|
| 17 |
A search for doxycycline-dependent mutations that increase Drosophila melanogaster life span identifies the VhaSFD, Sugar baby, filamin, fwd and Cctl genes
|
Landis, Gary N
|
|
2003
|
|
2 |
|
artikel
|
| 18 |
A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets
|
Cheng, Chao
|
|
2011
|
|
2 |
|
artikel
|
| 19 |
Asymmetric relationships between proteins shape genome evolution
|
Notebaart, Richard A
|
|
2009
|
|
2 |
|
artikel
|
| 20 |
A universal method for automated gene mapping
|
Zipperlen, Peder
|
|
2005
|
|
2 |
|
artikel
|
| 21 |
Autosomal monoallelic expression in the mouse
|
Zwemer, Lillian M
|
|
2012
|
|
2 |
|
artikel
|
| 22 |
Boosting with stumps for predicting transcription start sites
|
Zhao, Xiaoyue
|
|
2007
|
|
2 |
|
artikel
|
| 23 |
Both subtelomeric regions are required and sufficient for specific DNA fragmentation during macronuclear development in Stylonychia lemnae
|
Jönsson, Franziska
|
|
2001
|
|
2 |
p. research0005.1-research0005.11
|
artikel
|
| 24 |
Bringing order to protein disorder through comparative genomics and genetic interactions
|
Bellay, Jeremy
|
|
2011
|
|
2 |
|
artikel
|
| 25 |
Candidate genes for alcohol preference identified by expression profiling in alcohol-preferring and -nonpreferring reciprocal congenic rats
|
Liang, Tiebing
|
|
2010
|
|
2 |
|
artikel
|
| 26 |
Characterizing linkage disequilibrium and evaluating imputation power of human genomic insertion-deletion polymorphisms
|
Lu, James T
|
|
2012
|
|
2 |
|
artikel
|
| 27 |
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
|
Li, Guoliang
|
|
2010
|
|
2 |
|
artikel
|
| 28 |
Chromatin structural changes around satellite repeats on the female sex chromosome in Schistosoma mansoni and their possible role in sex chromosome emergence
|
Lepesant, Julie MJ
|
|
2012
|
|
2 |
|
artikel
|
| 29 |
Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase
|
Moses, Alan M
|
|
2007
|
|
2 |
|
artikel
|
| 30 |
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies
|
Sugawara, Masayuki
|
|
2013
|
|
2 |
|
artikel
|
| 31 |
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum
|
Sucgang, Richard
|
|
2011
|
|
2 |
|
artikel
|
| 32 |
Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans
|
Hu, Guanggan
|
|
2008
|
|
2 |
|
artikel
|
| 33 |
Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains
|
Slawson, Elizabeth E
|
|
2006
|
|
2 |
|
artikel
|
| 34 |
Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae
|
Tripoli, Gaetano
|
|
2005
|
|
2 |
|
artikel
|
| 35 |
Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia
|
Chang, Li Wei
|
|
2008
|
|
2 |
|
artikel
|
| 36 |
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza
|
Kim, HyeRan
|
|
2008
|
|
2 |
|
artikel
|
| 37 |
Correction of technical bias in clinical microarray data improves concordance with known biological information
|
Eklund, Aron C
|
|
2008
|
|
2 |
|
artikel
|
| 38 |
Correction: The genome sequence of the ground tit Pseudopodoces humilis provides insights into its adaptation to high altitude
|
Cai, Qingle
|
|
2014
|
|
2 |
|
artikel
|
| 39 |
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
|
Podell, Sheila
|
|
2007
|
|
2 |
|
artikel
|
| 40 |
Dating the age of admixture via wavelet transform analysis of genome-wide data
|
Pugach, Irina
|
|
2011
|
|
2 |
|
artikel
|
| 41 |
Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes
|
Lawson, Mark J
|
|
2006
|
|
2 |
|
artikel
|
| 42 |
DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies
|
Hovatta, Iiris
|
|
2007
|
|
2 |
|
artikel
|
| 43 |
Do Alu repeats drive the evolution of the primate transcriptome?
|
Urrutia, Araxi O
|
|
2008
|
|
2 |
|
artikel
|
| 44 |
EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data
|
Bock, Christoph
|
|
2009
|
|
2 |
|
artikel
|
| 45 |
Evaluation of differential gene expression during behavioral development in the honeybee using microarrays and northern blots
|
Kucharski, Robert
|
|
2002
|
|
2 |
p. research0007.1-research0007.9
|
artikel
|
| 46 |
Evidence from comparative genomics for a complete sexual cycle in the 'asexual' pathogenic yeast Candida glabrata
|
Wong, Simon
|
|
2003
|
|
2 |
|
artikel
|
| 47 |
Evidence-ranked motif identification
|
Georgiev, Stoyan
|
|
2010
|
|
2 |
|
artikel
|
| 48 |
Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes
|
Anantharaman, Vivek
|
|
2003
|
|
2 |
|
artikel
|
| 49 |
Evolution of insect proteomes: insights into synapse organization and synaptic vesicle life cycle
|
Yanay, Chava
|
|
2008
|
|
2 |
|
artikel
|
| 50 |
Exclusion of EDNRB and KIT as the basis for white spotting in Border Collies
|
Metallinos, Danika
|
|
2000
|
|
2 |
p. research0004.1-research0004.4
|
artikel
|
| 51 |
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays
|
Hazen, Samuel P
|
|
2009
|
|
2 |
|
artikel
|
| 52 |
Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray
|
Bozdech, Zbynek
|
|
2003
|
|
2 |
|
artikel
|
| 53 |
Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach
|
Elemento, Olivier
|
|
2005
|
|
2 |
|
artikel
|
| 54 |
Fast genomic μChIP-chip from 1,000 cells
|
Dahl, John Arne
|
|
2009
|
|
2 |
|
artikel
|
| 55 |
Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes
|
Warnecke, Tobias
|
|
2008
|
|
2 |
|
artikel
|
| 56 |
Functional protein divergence in the evolution of Homo sapiens
|
Lopez-Bigas, Nuria
|
|
2008
|
|
2 |
|
artikel
|
| 57 |
Gene ontology analysis for RNA-seq: accounting for selection bias
|
Young, Matthew D
|
|
2010
|
|
2 |
|
artikel
|
| 58 |
'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns
|
Hastie, Trevor
|
|
2000
|
|
2 |
p. research0003.1-research0003.21
|
artikel
|
| 59 |
Genesis and evolution of the Evx and Mox genes and the extended Hox and ParaHox gene clusters
|
Minguillón, Carolina
|
|
2003
|
|
2 |
|
artikel
|
| 60 |
Genetic ancestry of participants in the National Children’s Study
|
Smith, Erin N
|
|
2014
|
|
2 |
|
artikel
|
| 61 |
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
|
Clarke, Michael
|
|
2013
|
|
2 |
|
artikel
|
| 62 |
2× genomes - depth does matter
|
Milinkovitch, Michel C
|
|
2010
|
|
2 |
|
artikel
|
| 63 |
Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans
|
González-Aguilera, Cristina
|
|
2014
|
|
2 |
|
artikel
|
| 64 |
Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions
|
Subramanian, Subbaya
|
|
2003
|
|
2 |
|
artikel
|
| 65 |
Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling
|
Huysman, Marie JJ
|
|
2010
|
|
2 |
|
artikel
|
| 66 |
Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells
|
Siddiqui, Najeeb U
|
|
2012
|
|
2 |
|
artikel
|
| 67 |
Genomewide characterization of non-polyadenylated RNAs
|
Yang, Li
|
|
2011
|
|
2 |
|
artikel
|
| 68 |
Genome-wide co-localization of Polycomb orthologs and their effects on gene expression in human fibroblasts
|
Pemberton, Helen
|
|
2014
|
|
2 |
|
artikel
|
| 69 |
Genome-wide investigation of light and carbon signaling interactions in Arabidopsis
|
Thum, Karen E
|
|
2004
|
|
2 |
|
artikel
|
| 70 |
Genome wide prediction of HNF4α functional binding sites by the use of local and global sequence context
|
Kel, Alexander E
|
|
2008
|
|
2 |
|
artikel
|
| 71 |
Genomic analysis of early murine mammary gland development using novel probe-level algorithms
|
Master, Stephen R
|
|
2005
|
|
2 |
|
artikel
|
| 72 |
Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses
|
Swaminathan, Kankshita
|
|
2010
|
|
2 |
|
artikel
|
| 73 |
Genomic degradation of a young Y chromosome in Drosophila miranda
|
Bachtrog, Doris
|
|
2008
|
|
2 |
|
artikel
|
| 74 |
Genomic features defining exonic variants that modulate splicing
|
Woolfe, Adam
|
|
2010
|
|
2 |
|
artikel
|
| 75 |
Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads
|
Turro, Ernest
|
|
2011
|
|
2 |
|
artikel
|
| 76 |
High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research
|
Reichwald, Kathrin
|
|
2009
|
|
2 |
|
artikel
|
| 77 |
Hominoid chromosomal rearrangements on 17q map to complex regions of segmental duplication
|
Cardone, Maria Francesca
|
|
2008
|
|
2 |
|
artikel
|
| 78 |
Identification of ciliated sensory neuron-expressed genes in Caenorhabditis elegans using targeted pull-down of poly(A) tails
|
Kunitomo, Hirofumi
|
|
2005
|
|
2 |
|
artikel
|
| 79 |
Identification of functional modules that correlate with phenotypic difference: the influence of network topology
|
Hung, Jui-Hung
|
|
2010
|
|
2 |
|
artikel
|
| 80 |
Identification of novel transcripts with differential dorso-ventral expression in Xenopus gastrula using serial analysis of gene expression
|
Faunes, Fernando
|
|
2009
|
|
2 |
|
artikel
|
| 81 |
Identification of signaling components required for the prediction of cytokine release in RAW 264.7 macrophages
|
Pradervand, Sylvain
|
|
2006
|
|
2 |
|
artikel
|
| 82 |
Identifying genetic networks underlying myometrial transition to labor
|
Salomonis, Nathan
|
|
2005
|
|
2 |
|
artikel
|
| 83 |
Immunity and other defenses in pea aphids, Acyrthosiphon pisum
|
Gerardo, Nicole M
|
|
2010
|
|
2 |
|
artikel
|
| 84 |
Inferring the functions of longevity genes with modular subnetwork biomarkers of Caenorhabditis elegans aging
|
Fortney, Kristen
|
|
2010
|
|
2 |
|
artikel
|
| 85 |
In silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detection
|
Marchal, Kathleen
|
|
2004
|
|
2 |
|
artikel
|
| 86 |
Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database
|
Zhu, Yunxia
|
|
2003
|
|
2 |
|
artikel
|
| 87 |
Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?
|
Deshayes, Caroline
|
|
2007
|
|
2 |
|
artikel
|
| 88 |
Iterative orthology prediction uncovers new mitochondrial proteins and identifies C12orf62 as the human ortholog of COX14, a protein involved in the assembly of cytochrome c oxidase
|
Szklarczyk, Radek
|
|
2012
|
|
2 |
|
artikel
|
| 89 |
Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylella species and in heterocystous cyanobacteria
|
Xie, Gary
|
|
2003
|
|
2 |
|
artikel
|
| 90 |
Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites
|
Sargeant, Tobias J
|
|
2006
|
|
2 |
|
artikel
|
| 91 |
microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder
|
Perkins, Diana O
|
|
2007
|
|
2 |
|
artikel
|
| 92 |
MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data
|
Chen, Yiwen
|
|
2011
|
|
2 |
|
artikel
|
| 93 |
Model-based cluster analysis of microarray gene-expression data
|
Pan, Wei
|
|
2002
|
|
2 |
p. research0009.1-research0009.8
|
artikel
|
| 94 |
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
|
Casneuf, Tineke
|
|
2006
|
|
2 |
|
artikel
|
| 95 |
Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans
|
Vavouri, Tanya
|
|
2007
|
|
2 |
|
artikel
|
| 96 |
Patterns and rates of intron divergence between humans and chimpanzees
|
Gazave, Elodie
|
|
2007
|
|
2 |
|
artikel
|
| 97 |
Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes
|
Alsmark, Cecilia
|
|
2013
|
|
2 |
|
artikel
|
| 98 |
PDGF/VEGF signaling controls cell size in Drosophila
|
Sims, David
|
|
2009
|
|
2 |
|
artikel
|
| 99 |
PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data
|
Korbel, Jan O
|
|
2009
|
|
2 |
|
artikel
|
| 100 |
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
|
Freeberg, Mallory A
|
|
2013
|
|
2 |
|
artikel
|
| 101 |
Polarized monocyte response to cytokine stimulation
|
Nagorsen, Dirk
|
|
2005
|
|
2 |
|
artikel
|
| 102 |
Population-specificity of human DNA methylation
|
Fraser, Hunter B
|
|
2012
|
|
2 |
|
artikel
|
| 103 |
PRDM9 points the zinc finger at meiotic recombination hotspots
|
Neale, Matthew J
|
|
2010
|
|
2 |
|
artikel
|
| 104 |
Predicting genes for orphan metabolic activities using phylogenetic profiles
|
Chen, Lifeng
|
|
2006
|
|
2 |
|
artikel
|
| 105 |
Predicting specificity in bZIP coiled-coil protein interactions
|
Fong, Jessica H
|
|
2004
|
|
2 |
|
artikel
|
| 106 |
Predicting the effects of frameshifting indels
|
Hu, Jing
|
|
2012
|
|
2 |
|
artikel
|
| 107 |
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
|
Choe, Sung E
|
|
2005
|
|
2 |
|
artikel
|
| 108 |
Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta
|
Fairclough, Stephen R
|
|
2013
|
|
2 |
|
artikel
|
| 109 |
Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
|
Haab, Brian B
|
|
2001
|
|
2 |
p. research0004.1-research0004.13
|
artikel
|
| 110 |
Proteomic analysis of the secretome of Leishmania donovani
|
Silverman, J Maxwell
|
|
2008
|
|
2 |
|
artikel
|
| 111 |
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
|
Hellemans, Jan
|
|
2007
|
|
2 |
|
artikel
|
| 112 |
Quantifying similarity between motifs
|
Gupta, Shobhit
|
|
2007
|
|
2 |
|
artikel
|
| 113 |
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
|
Kingsford, Carleton L
|
|
2007
|
|
2 |
|
artikel
|
| 114 |
Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over
|
Haddrill, Penelope R
|
|
2007
|
|
2 |
|
artikel
|
| 115 |
Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress
|
Aragon, Anthony D
|
|
2006
|
|
2 |
|
artikel
|
| 116 |
RNA-editing-mediated exon evolution
|
Lev-Maor, Galit
|
|
2007
|
|
2 |
|
artikel
|
| 117 |
Selection in the evolution of gene duplications
|
Kondrashov, Fyodor A
|
|
2002
|
|
2 |
p. research0008.1-research0008.9
|
artikel
|
| 118 |
SEPALLATA3: the 'glue' for MADS box transcription factor complex formation
|
Immink, Richard GH
|
|
2009
|
|
2 |
|
artikel
|
| 119 |
Sequence context affects the rate of short insertions and deletions in flies and primates
|
Tanay, Amos
|
|
2008
|
|
2 |
|
artikel
|
| 120 |
SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data
|
Jia, Wenlong
|
|
2013
|
|
2 |
|
artikel
|
| 121 |
SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays
|
Anton, Miguel A
|
|
2008
|
|
2 |
|
artikel
|
| 122 |
Specific nuclear envelope transmembrane proteins can promote the location of chromosomes to and from the nuclear periphery
|
Zuleger, Nikolaj
|
|
2013
|
|
2 |
|
artikel
|
| 123 |
Stress response regulators identified through genome-wide transcriptome analysis of the (p)ppGpp-dependent response in Rhizobium etli
|
Vercruysse, Maarten
|
|
2011
|
|
2 |
|
artikel
|
| 124 |
Systems biology meets stress ecology: linking molecular and organismal stress responses in Daphnia magna
|
Heckmann, Lars-Henrik
|
|
2008
|
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