| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
A computational investigation of kinetoplastid trans-splicing
|
Gopal, Shuba
|
|
2005
|
|
11 |
|
artikel
|
| 2 |
A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres
|
Ellwood, Simon R
|
|
2010
|
|
11 |
|
artikel
|
| 3 |
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
|
Podar, Mircea
|
|
2008
|
|
11 |
|
artikel
|
| 4 |
AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation
|
Aldridge, Sarah
|
|
2013
|
|
11 |
|
artikel
|
| 5 |
Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa
|
Loscher, Carol J
|
|
2007
|
|
11 |
|
artikel
|
| 6 |
Analysis of expressed SNPs identifies variable extents of expression from the human inactive X chromosome
|
Cotton, Allison M
|
|
2013
|
|
11 |
|
artikel
|
| 7 |
Analysis of molecular inversion probe performance for allele copy number determination
|
Wang, Yuker
|
|
2007
|
|
11 |
|
artikel
|
| 8 |
Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas
|
King, Nichole L
|
|
2006
|
|
11 |
|
artikel
|
| 9 |
Ancestry-related assortative mating in Latino populations
|
Risch, Neil
|
|
2009
|
|
11 |
|
artikel
|
| 10 |
A phenotypic screening platform to identify small molecule modulators of Chlamydomonas reinhardtii growth, motility and photosynthesis
|
Alfred, Simon E
|
|
2012
|
|
11 |
|
artikel
|
| 11 |
Application of independent component analysis to microarrays
|
Lee, Su-In
|
|
2003
|
|
11 |
|
artikel
|
| 12 |
Application of phage display to high throughput antibody generation and characterization
|
Schofield, Darren J
|
|
2007
|
|
11 |
|
artikel
|
| 13 |
ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
|
Killion, Patrick J
|
|
2008
|
|
11 |
|
artikel
|
| 14 |
Assembly and characterization of heterochromatin and euchromatin on human artificial chromosomes
|
Grimes, Brenda R
|
|
2004
|
|
11 |
|
artikel
|
| 15 |
BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources
|
Wu, Chunlei
|
|
2009
|
|
11 |
|
artikel
|
| 16 |
BoCaTFBS: a boosted cascade learner to refine the binding sites suggested by ChIP-chip experiments
|
Wang, Lu-yong
|
|
2006
|
|
11 |
|
artikel
|
| 17 |
Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness
|
Marques, Ana C
|
|
2009
|
|
11 |
|
artikel
|
| 18 |
Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases
|
Fukuda, Eri
|
|
2008
|
|
11 |
|
artikel
|
| 19 |
Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture
|
Grob, Stefan
|
|
2013
|
|
11 |
|
artikel
|
| 20 |
Characterization of the differentially methylated region of the Impact gene that exhibits Glires-specific imprinting
|
Okamura, Kohji
|
|
2008
|
|
11 |
|
artikel
|
| 21 |
ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data
|
Buck, Michael J
|
|
2005
|
|
11 |
|
artikel
|
| 22 |
Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization
|
Gibbons, Francis D
|
|
2005
|
|
11 |
|
artikel
|
| 23 |
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
|
Tran, Robert K
|
|
2005
|
|
11 |
|
artikel
|
| 24 |
Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment
|
Shevchenko, Anna
|
|
2008
|
|
11 |
|
artikel
|
| 25 |
Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs
|
Marques, Ana C
|
|
2013
|
|
11 |
|
artikel
|
| 26 |
COMIT: identification of noncoding motifs under selection in coding sequences
|
Kural, Deniz
|
|
2009
|
|
11 |
|
artikel
|
| 27 |
Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution
|
Vieira, Filipe G
|
|
2007
|
|
11 |
|
artikel
|
| 28 |
Comparative genomics reveals birth and death of fragile regions in mammalian evolution
|
Alekseyev, Max A
|
|
2010
|
|
11 |
|
artikel
|
| 29 |
Composite effects of gene determinants on the translation speed and density of ribosomes
|
Tuller, Tamir
|
|
2011
|
|
11 |
|
artikel
|
| 30 |
Computational discovery of regulatory elements in a continuous expression space
|
Lajoie, Mathieu
|
|
2012
|
|
11 |
|
artikel
|
| 31 |
Consensus clustering and functional interpretation of gene-expression data
|
Swift, Stephen
|
|
2004
|
|
11 |
|
artikel
|
| 32 |
Conservation and divergence of gene families encoding components of innate immune response systems in zebrafish
|
Stein, Cornelia
|
|
2007
|
|
11 |
|
artikel
|
| 33 |
Constructing a fish metabolic network model
|
Li, Shuzhao
|
|
2010
|
|
11 |
|
artikel
|
| 34 |
Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora
|
Wang, Shi
|
|
2009
|
|
11 |
|
artikel
|
| 35 |
CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features
|
Essien, Kobby
|
|
2009
|
|
11 |
|
artikel
|
| 36 |
Detection of chromosomes tagged with green fluorescent protein in live Arabidopsis thaliana plants
|
Kato, Naohiro
|
|
2001
|
|
11 |
p. research0045.1-research0045.10
|
artikel
|
| 37 |
Determinants of protein function revealed by combinatorial entropy optimization
|
Reva, Boris
|
|
2007
|
|
11 |
|
artikel
|
| 38 |
Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq
|
Motallebipour, Mehdi
|
|
2009
|
|
11 |
|
artikel
|
| 39 |
Discovery of active enhancers through bidirectional expression of short transcripts
|
Melgar, Michael F
|
|
2011
|
|
11 |
|
artikel
|
| 40 |
Divergence of exonic splicing elements after gene duplication and the impact on gene structures
|
Zhang, Zhenguo
|
|
2009
|
|
11 |
|
artikel
|
| 41 |
Do universal codon-usage patterns minimize the effects of mutation and translation error?
|
Marquez, Roberto
|
|
2005
|
|
11 |
|
artikel
|
| 42 |
Egr1 regulates the coordinated expression of numerous EGF receptor target genes as identified by ChIP-on-chip
|
Arora, Shilpi
|
|
2008
|
|
11 |
|
artikel
|
| 43 |
Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1
|
Saw, Jimmy H
|
|
2008
|
|
11 |
|
artikel
|
| 44 |
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
|
Minoche, André E
|
|
2011
|
|
11 |
|
artikel
|
| 45 |
Evidence for conserved post-transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs
|
Marques, Ana C
|
|
2012
|
|
11 |
|
artikel
|
| 46 |
Expansion of the human mitochondrial proteome by intra- and inter-compartmental protein duplication
|
Szklarczyk, Radek
|
|
2009
|
|
11 |
|
artikel
|
| 47 |
Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
|
Gasch, Audrey P
|
|
2002
|
|
11 |
p. research0059.1-research0059.22
|
artikel
|
| 48 |
Expressionview: visualization of quantitative trait loci and gene-expression data in Ensembl
|
Fischer, Gertrud
|
|
2003
|
|
11 |
|
artikel
|
| 49 |
GeneChip analysis of human embryonic stem cell differentiation into hemangioblasts: an in silico dissection of mixed phenotypes
|
Lu, Shi-Jiang
|
|
2007
|
|
11 |
|
artikel
|
| 50 |
Gene expression atlas of the mouse central nervous system: impact and interactions of age, energy intake and gender
|
Xu, Xiangru
|
|
2007
|
|
11 |
|
artikel
|
| 51 |
Genetic diversity in India and the inference of Eurasian population expansion
|
Xing, Jinchuan
|
|
2010
|
|
11 |
|
artikel
|
| 52 |
Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata
|
Lelandais, Gaëlle
|
|
2008
|
|
11 |
|
artikel
|
| 53 |
Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays
|
Popova, Tatiana
|
|
2009
|
|
11 |
|
artikel
|
| 54 |
Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine
|
Zheng, Peng
|
|
2011
|
|
11 |
|
artikel
|
| 55 |
Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors
|
Cheng, Chao
|
|
2011
|
|
11 |
|
artikel
|
| 56 |
Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
|
Pang, Mingxiong
|
|
2009
|
|
11 |
|
artikel
|
| 57 |
Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex
|
Yang, Shuzhang
|
|
2007
|
|
11 |
|
artikel
|
| 58 |
Genome-wide gene expression in response to parasitoid attack in Drosophila
|
Wertheim, Bregje
|
|
2005
|
|
11 |
|
artikel
|
| 59 |
Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors
|
Gama-Carvalho, Margarida
|
|
2006
|
|
11 |
|
artikel
|
| 60 |
Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants
|
Palenchar, Peter M
|
|
2004
|
|
11 |
|
artikel
|
| 61 |
Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)
|
Zheng, Lei-Ying
|
|
2011
|
|
11 |
|
artikel
|
| 62 |
Genomic analysis reveals key aspects of prokaryotic symbiosis in the phototrophic consortium “Chlorochromatium aggregatum”
|
Liu, Zhenfeng
|
|
2013
|
|
11 |
|
artikel
|
| 63 |
Genomic functional annotation using co-evolution profiles of gene clusters
|
Zheng, Yu
|
|
2002
|
|
11 |
p. research0060.1-research0060.9
|
artikel
|
| 64 |
Genomic transcriptional profiling identifies a candidate blood biomarker signature for the diagnosis of septicemic melioidosis
|
Pankla, Rungnapa
|
|
2009
|
|
11 |
|
artikel
|
| 65 |
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
|
Peter, Brian J
|
|
2004
|
|
11 |
|
artikel
|
| 66 |
Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae
|
Regenberg, Birgitte
|
|
2006
|
|
11 |
|
artikel
|
| 67 |
Heat shock factor binding in Alu repeats expands its involvement in stress through an antisense mechanism
|
Pandey, Rajesh
|
|
2011
|
|
11 |
|
artikel
|
| 68 |
High resolution discovery and confirmation of copy number variants in 90 Yoruba Nigerians
|
Matsuzaki, Hajime
|
|
2009
|
|
11 |
|
artikel
|
| 69 |
Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling
|
Nadal-Ribelles, Mariona
|
|
2012
|
|
11 |
|
artikel
|
| 70 |
How biologically relevant are interaction-based modules in protein networks?
|
Poyatos, Juan F
|
|
2004
|
|
11 |
|
artikel
|
| 71 |
Human genes with CpG island promoters have a distinct transcription-associated chromatin organization
|
Vavouri, Tanya
|
|
2012
|
|
11 |
|
artikel
|
| 72 |
Hundreds of putatively functional small open reading frames in Drosophila
|
Ladoukakis, Emmanuel
|
|
2011
|
|
11 |
|
artikel
|
| 73 |
Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics
|
Vandepoele, Klaas
|
|
2006
|
|
11 |
|
artikel
|
| 74 |
Immunostaining of modified histones defines high-level features of the human metaphase epigenome
|
Terrenoire, Edith
|
|
2010
|
|
11 |
|
artikel
|
| 75 |
Improved analytical methods for microarray-based genome-composition analysis
|
Kim, Charles C
|
|
2002
|
|
11 |
p. research0065.1-research0065.17
|
artikel
|
| 76 |
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors
|
Aure, Miriam Ragle
|
|
2013
|
|
11 |
|
artikel
|
| 77 |
Inferring genome-scale rearrangement phylogeny and ancestral gene order: a Drosophila case study
|
Bhutkar, Arjun
|
|
2007
|
|
11 |
|
artikel
|
| 78 |
InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor
|
Coletta, Alain
|
|
2012
|
|
11 |
|
artikel
|
| 79 |
Integrative analysis for finding genes and networks involved in diabetes and other complex diseases
|
Bergholdt, Regine
|
|
2007
|
|
11 |
|
artikel
|
| 80 |
MADS-complexes regulate transcriptome dynamics during pollen maturation
|
Verelst, Wim
|
|
2007
|
|
11 |
|
artikel
|
| 81 |
Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans
|
David, Helga
|
|
2006
|
|
11 |
|
artikel
|
| 82 |
Metabolic reprogramming by viruses in the sunlit and dark ocean
|
Hurwitz, Bonnie L
|
|
2013
|
|
11 |
|
artikel
|
| 83 |
Microbiome dynamics of human epidermis following skin barrier disruption
|
Zeeuwen, Patrick LJM
|
|
2012
|
|
11 |
|
artikel
|
| 84 |
MIRAGE: a functional genomics-based approach for metabolic network model reconstruction and its application to cyanobacteria networks
|
Vitkin, Edward
|
|
2012
|
|
11 |
|
artikel
|
| 85 |
Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels
|
Young, Janet M
|
|
2003
|
|
11 |
|
artikel
|
| 86 |
Optimality of the genetic code with respect to protein stability and amino-acid frequencies
|
Gilis, Dimitri
|
|
2001
|
|
11 |
p. research0049.1-research0049.12
|
artikel
|
| 87 |
Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum
|
Oehring, Sophie C
|
|
2012
|
|
11 |
|
artikel
|
| 88 |
Patient-oriented gene set analysis for cancer mutation data
|
Boca, Simina M
|
|
2010
|
|
11 |
|
artikel
|
| 89 |
Patterns of sequence conservation in presynaptic neural genes
|
Hadley, Dexter
|
|
2006
|
|
11 |
|
artikel
|
| 90 |
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites
|
Gnad, Florian
|
|
2007
|
|
11 |
|
artikel
|
| 91 |
Phylogenetic analysis of 277 human G-protein-coupled receptors as a tool for the prediction of orphan receptor ligands
|
Joost, Patrick
|
|
2002
|
|
11 |
p. research0063.1-research0063.16
|
artikel
|
| 92 |
Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum
|
Huang, Jinling
|
|
2004
|
|
11 |
|
artikel
|
| 93 |
POCUS: mining genomic sequence annotation to predict disease genes
|
Turner, Frances S
|
|
2003
|
|
11 |
|
artikel
|
| 94 |
Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum
|
Bunnik, Evelien M
|
|
2013
|
|
11 |
|
artikel
|
| 95 |
Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs revealed multiple domestication events in East Asia
|
Wu, Gui-Sheng
|
|
2007
|
|
11 |
|
artikel
|
| 96 |
Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level
|
Harismendy, Olivier
|
|
2010
|
|
11 |
|
artikel
|
| 97 |
Predicting domain-domain interactions using a parsimony approach
|
Guimarães, Katia S
|
|
2006
|
|
11 |
|
artikel
|
| 98 |
Prediction of co-regulated genes in Bacillus subtilis on the basis of upstream elements conserved across three closely related species
|
Terai, Goro
|
|
2001
|
|
11 |
p. research0048.1-research0048.12
|
artikel
|
| 99 |
ProCAT: a data analysis approach for protein microarrays
|
Zhu, Xiaowei
|
|
2006
|
|
11 |
|
artikel
|
| 100 |
Proteomics studies confirm the presence of alternative protein isoforms on a large scale
|
Tress, Michael L
|
|
2008
|
|
11 |
|
artikel
|
| 101 |
Quake: quality-aware detection and correction of sequencing errors
|
Kelley, David R
|
|
2010
|
|
11 |
|
artikel
|
| 102 |
Quantification of ortholog losses in insects and vertebrates
|
Wyder, Stefan
|
|
2007
|
|
11 |
|
artikel
|
| 103 |
Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria
|
Rodionov, Dmitry A
|
|
2004
|
|
11 |
|
artikel
|
| 104 |
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
|
Bergman, Casey M
|
|
2006
|
|
11 |
|
artikel
|
| 105 |
Reduced levels of two modifiers of epigenetic gene silencing, Dnmt3a and Trim28, cause increased phenotypic noise
|
Whitelaw, Nadia C
|
|
2010
|
|
11 |
|
artikel
|
| 106 |
Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis
|
Tomaru, Yasuhiro
|
|
2009
|
|
11 |
|
artikel
|
| 107 |
Regulatory module network of basic/helix-loop-helix transcription factors in mouse brain
|
Li, Jing
|
|
2007
|
|
11 |
|
artikel
|
| 108 |
RESOURCERER: a database for annotating and linking microarray resources within and across species
|
Tsai, Jennifer
|
|
2001
|
|
11 |
p. software0002.1-software0002.4
|
artikel
|
| 109 |
Searching for SNPs with cloud computing
|
Langmead, Ben
|
|
2009
|
|
11 |
|
artikel
|
| 110 |
Sequence and functional analyses of Haemophilus spp. genomic islands
|
Juhas, Mario
|
|
2007
|
|
11 |
|
artikel
|
| 111 |
Serum-dependent transcriptional networks identify distinct functional roles for H-Ras and N-Ras during initial stages of the cell cycle
|
Castellano, Esther
|
|
2009
|
|
11 |
|
artikel
|
| 112 |
Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
|
Zaremba-Niedzwiedzka, Katarzyna
|
|
2013
|
|
11 |
|
artikel
|
| 113 |
Sources of nonlinearity in cDNA microarray expression measurements
|
Ramdas, Latha
|
|
2001
|
|
11 |
p. research0047.1-research0047.7
|
artikel
|
| 114 |
Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana
|
Wille, Anja
|
|
2004
|
|
11 |
|
artikel
|
| 115 |
Spatial patterns of transcriptional activity in the chromosome of Escherichia coli
|
Jeong, Kyeong Soo
|
|
2004
|
|
11 |
|
artikel
|
| 116 |
Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks
|
Joseph-Strauss, Daphna
|
|
2007
|
|
11 |
|
artikel
|
| 117 |
Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing
|
Zhao, Qi
|
|
2010
|
|
11 |
|
artikel
|
| 118 |
Systematic screening of polyphosphate (poly P) levels in yeast mutant cells reveals strong interdependence with primary metabolism
|
Freimoser, Florian M
|
|
2006
|
|
11 |
|
artikel
|
| 119 |
The amino-acid mutational spectrum of human genetic disease
|
Vitkup, Dennis
|
|
2003
|
|
11 |
|
artikel
|
| 120 |
The determinants of gene order conservation in yeasts
|
Poyatos, Juan F
|
|
2007
|
|
11 |
|
artikel
|
| 121 |
The distributions, mechanisms, and structures of metabolite-binding riboswitches
|
Barrick, Jeffrey E
|
|
2007
|
|
11 |
|
artikel
|
| 122 |
The genetic structure of recombinant inbred mice: high-resolution consensus maps for complex trait analysis
|
Williams, Robert W
|
|
2001
|
|
11 |
p. research0046.1-research0046.18
|
artikel
|
| 123 |
The global landscape of sequence diversity
|
Peregrín-Álvarez, José Manuel
|
|
2007
|
|
11 |
|
artikel
|
| 124 |
The interferon-inducible p47 (IRG) GTPases in vertebrates: loss of the cell autonomous resistance mechanism in the human lineage
|
Bekpen, Cemalettin
|
|
2005
|
|
11 |
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