| nr |
titel |
auteur |
tijdschrift |
jaar |
jaarg. |
afl. |
pagina('s) |
type |
| 1 |
Accurate top protein variant discovery via low-N pick-and-validate machine learning
|
Chu, Hoi Yee
|
|
|
|
2 |
p. 193-203.e6
|
artikel
|
| 2 |
A Computational Framework for Genome-wide Characterization of the Human Disease Landscape
|
Lee, Young-suk
|
|
2019
|
|
2 |
p. 152-162.e6
|
artikel
|
| 3 |
A continuous epistasis model for predicting growth rate given combinatorial variation in gene expression and environment
|
Otto, Ryan M.
|
|
|
|
2 |
p. 134-148.e7
|
artikel
|
| 4 |
A Dynamic Model of Immune Responses to Antigen Presentation Predicts Different Regions of Tumor or Pathogen Elimination
|
Sontag, Eduardo D.
|
|
2017
|
|
2 |
p. 231-241.e11
|
artikel
|
| 5 |
A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS
|
Heusel, Moritz
|
|
|
|
2 |
p. 133-155.e6
|
artikel
|
| 6 |
Allele-specific genomic data elucidate the role of somatic gain and copy-number neutral loss of heterozygosity in cancer
|
Ciani, Yari
|
|
|
|
2 |
p. 183-193.e7
|
artikel
|
| 7 |
All’s Well That Scales Well
|
Mak, H. Craig
|
|
2016
|
|
2 |
p. 59-
1 p.
|
artikel
|
| 8 |
Antithetic Integral Feedback Ensures Robust Perfect Adaptation in Noisy Biomolecular Networks
|
Briat, Corentin
|
|
2016
|
|
2 |
p. 133-
1 p.
|
artikel
|
| 9 |
Assessing Inequality in Transcriptomic Data
|
Jiang, Lan
|
|
|
|
2 |
p. 149-150
|
artikel
|
| 10 |
Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response
|
Vedel, Søren
|
|
2016
|
|
2 |
p. 187-198
12 p.
|
artikel
|
| 11 |
A synthetic gene circuit for imaging-free detection of signaling pulses
|
Ravindran, Pavithran T.
|
|
|
|
2 |
p. 131-142.e13
|
artikel
|
| 12 |
A top variant identification pipeline for protein engineering
|
Chen, Hui
|
|
|
|
2 |
p. 105-106
|
artikel
|
| 13 |
A Two-Layer Gene Circuit for Decoupling Cell Growth from Metabolite Production
|
Lo, Tat-Ming
|
|
2016
|
|
2 |
p. 133-143
11 p.
|
artikel
|
| 14 |
Automated Design of Synthetic Cell Classifier Circuits Using a Two-Step Optimization Strategy
|
Mohammadi, Pejman
|
|
2017
|
|
2 |
p. 207-218.e14
|
artikel
|
| 15 |
Benchmarking Computational Doublet-Detection Methods for Single-Cell RNA Sequencing Data
|
Xi, Nan Miles
|
|
|
|
2 |
p. 176-194.e6
|
artikel
|
| 16 |
Best Practices for Making Reproducible Biochemical Models
|
Porubsky, Veronica L.
|
|
|
|
2 |
p. 109-120
|
artikel
|
| 17 |
BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain
|
Pourhaghighi, Reza
|
|
|
|
2 |
p. 208
|
artikel
|
| 18 |
Canalization of C. elegans Vulva Induction against Anatomical Variability
|
Huelsz-Prince, Guizela
|
|
2017
|
|
2 |
p. 219-230.e6
|
artikel
|
| 19 |
Capturing a Long Look at Our Genetic Library
|
Lagarde, Julien
|
|
|
|
2 |
p. 153-155
|
artikel
|
| 20 |
Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis
|
Plaisier, Christopher L.
|
|
2016
|
|
2 |
p. 172-186
15 p.
|
artikel
|
| 21 |
CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy
|
Yuan, Bo
|
|
|
|
2 |
p. 128-140.e4
|
artikel
|
| 22 |
Cellular Advantages to Signaling in a Digital World
|
Mancuso, Christopher P.
|
|
2016
|
|
2 |
p. 114-115
2 p.
|
artikel
|
| 23 |
Clonally heritable gene expression imparts a layer of diversity within cell types
|
Mold, Jeff E.
|
|
|
|
2 |
p. 149-165.e10
|
artikel
|
| 24 |
Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics
|
Yang, Mi
|
|
|
|
2 |
p. 186-195.e9
|
artikel
|
| 25 |
Compensatory Cell Movements Confer Robustness to Mechanical Deformation during Embryonic Development
|
Jelier, Rob
|
|
2016
|
|
2 |
p. 160-171
12 p.
|
artikel
|
| 26 |
Comprehensive Analysis of Tissue-wide Gene Expression and Phenotype Data Reveals Tissues Affected in Rare Genetic Disorders
|
Feiglin, Ariel
|
|
2017
|
|
2 |
p. 140-148.e2
14661 p.
|
artikel
|
| 27 |
Compression Generated by a 3D Supracellular Actomyosin Cortex Promotes Embryonic Stem Cell Colony Growth and Expression of Nanog and Oct4
|
Du, Jing
|
|
2019
|
|
2 |
p. 214-220.e5
|
artikel
|
| 28 |
Computationally Optimized SARS-CoV-2 MHC Class I and II Vaccine Formulations Predicted to Target Human Haplotype Distributions
|
Liu, Ge
|
|
|
|
2 |
p. 131-144.e6
|
artikel
|
| 29 |
Considering and Reconsidering Peer Review
|
Mak, H. Craig
|
|
2017
|
|
2 |
p. 87-
1 p.
|
artikel
|
| 30 |
Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data
|
Yang, Yang
|
|
|
|
2 |
p. 208-218.e11
|
artikel
|
| 31 |
Controlling the human microbiome
|
Liu, Yang-Yu
|
|
|
|
2 |
p. 135-159
|
artikel
|
| 32 |
Convergent Identification and Interrogation of Tumor-Intrinsic Factors that Modulate Cancer Immunity In Vivo
|
Codina, Adan
|
|
2019
|
|
2 |
p. 136-151.e7
|
artikel
|
| 33 |
Cross-Comparison of Human iPSC Motor Neuron Models of Familial and Sporadic ALS Reveals Early and Convergent Transcriptomic Disease Signatures
|
Ho, Ritchie
|
|
|
|
2 |
p. 159-175.e9
|
artikel
|
| 34 |
Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species
|
Stein-O’Brien, Genevieve L.
|
|
|
|
2 |
p. 203
|
artikel
|
| 35 |
Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States
|
Kim, Jong Wook
|
|
2017
|
|
2 |
p. 105-118.e9
1.17999999896E11 p.
|
artikel
|
| 36 |
Deep Proteome Analysis Identifies Age-Related Processes in C. elegans
|
Narayan, Vikram
|
|
2016
|
|
2 |
p. 144-159
16 p.
|
artikel
|
| 37 |
Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate
|
Corwin, Thomas
|
|
2017
|
|
2 |
p. 128-139.e4
1.389873E6 p.
|
artikel
|
| 38 |
Design of Adjacent Transcriptional Regions to Tune Gene Expression and Facilitate Circuit Construction
|
Wu, Fuqing
|
|
|
|
2 |
p. 206-215.e6
|
artikel
|
| 39 |
Determination of the Gene Regulatory Network of a Genome-Reduced Bacterium Highlights Alternative Regulation Independent of Transcription Factors
|
Yus, Eva
|
|
2019
|
|
2 |
p. 143-158.e13
|
artikel
|
| 40 |
Differential Allele-Specific Expression Uncovers Breast Cancer Genes Dysregulated by Cis Noncoding Mutations
|
Przytycki, Pawel F.
|
|
|
|
2 |
p. 193-203.e4
|
artikel
|
| 41 |
Dissecting RAF Inhibitor Resistance by Structure-based Modeling Reveals Ways to Overcome Oncogenic RAS Signaling
|
Rukhlenko, Oleksii S.
|
|
|
|
2 |
p. 161-179.e14
|
artikel
|
| 42 |
Editorial Transparency
|
|
|
2017
|
|
2 |
p. 139
|
artikel
|
| 43 |
Entropy-Scaling Search of Massive Biological Data
|
Yu, Y. William
|
|
2015
|
|
2 |
p. 130-140
11 p.
|
artikel
|
| 44 |
Evaluation of Chen et al.: Overexpression of Protein Complexes and Aneuploidy
|
Amon, Angelika
|
|
2019
|
|
2 |
p. 107-108
|
artikel
|
| 45 |
Evaluation of Kuroda et al.: Insight into Yeast Isobutanol Tolerance with Advances Still Needed
|
Hittinger, Chris Todd
|
|
|
|
2 |
p. 124
|
artikel
|
| 46 |
Evaluation of Ravindran et al.: Real-time detection of signaling pulses in vivo: making cells monitor themselves
|
Garcia-Ojalvo, Jordi
|
|
|
|
2 |
p. 105-106
|
artikel
|
| 47 |
Even Noisy Responses Can Be Perfect If Integrated Properly
|
Doyle, John C.
|
|
2016
|
|
2 |
p. 73-75
3 p.
|
artikel
|
| 48 |
Evolutionary Inference across Eukaryotes Identifies Specific Pressures Favoring Mitochondrial Gene Retention
|
Johnston, Iain G.
|
|
2016
|
|
2 |
p. 101-111
11 p.
|
artikel
|
| 49 |
Explicit Modeling of siRNA-Dependent On- and Off-Target Repression Improves the Interpretation of Screening Results
|
Riba, Andrea
|
|
2017
|
|
2 |
p. 182-193.e4
|
artikel
|
| 50 |
Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes
|
Schlaffner, Christoph N.
|
|
2017
|
|
2 |
p. 152-156.e4
1.559849E6 p.
|
artikel
|
| 51 |
Finding the Optimal Tradeoffs
|
Mathew, Shibin
|
|
2017
|
|
2 |
p. 149-151
|
artikel
|
| 52 |
FLASHDeconv: Ultrafast, High-Quality Feature Deconvolution for Top-Down Proteomics
|
Jeong, Kyowon
|
|
|
|
2 |
p. 213-218.e6
|
artikel
|
| 53 |
From Yeast to Patients: The Audacity and Vision of Susan Lindquist
|
Khurana, Vikram
|
|
2017
|
|
2 |
p. 147-148
|
artikel
|
| 54 |
Fundamental Limits of Search
|
Kannan, Sreeram
|
|
2015
|
|
2 |
p. 102-103
2 p.
|
artikel
|
| 55 |
GCN2 adapts protein synthesis to scavenging-dependent growth
|
Nofal, Michel
|
|
|
|
2 |
p. 158-172.e9
|
artikel
|
| 56 |
GeneGini: Assessment via the Gini Coefficient of Reference “Housekeeping” Genes and Diverse Human Transporter Expression Profiles
|
O'Hagan, Steve
|
|
|
|
2 |
p. 230-244.e1
|
artikel
|
| 57 |
Generalizable and Scalable Visualization of Single-Cell Data Using Neural Networks
|
Cho, Hyunghoon
|
|
|
|
2 |
p. 185-191.e4
|
artikel
|
| 58 |
Gene Regulatory Strategies that Decode the Duration of NFκB Dynamics Contribute to LPS- versus TNF-Specific Gene Expression
|
Sen, Supriya
|
|
|
|
2 |
p. 169-182.e5
|
artikel
|
| 59 |
Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways
|
Khurana, Vikram
|
|
2017
|
|
2 |
p. 157-170.e14
|
artikel
|
| 60 |
Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders
|
Pearl, Jocelynn R.
|
|
2019
|
|
2 |
p. 122-135.e7
|
artikel
|
| 61 |
Genomic Recoding Broadly Obstructs the Propagation of Horizontally Transferred Genetic Elements
|
Ma, Natalie Jing
|
|
2016
|
|
2 |
p. 199-207
9 p.
|
artikel
|
| 62 |
Growth-Optimized Aminoacyl-tRNA Synthetase Levels Prevent Maximal tRNA Charging
|
Parker, Darren J.
|
|
|
|
2 |
p. 121-130.e6
|
artikel
|
| 63 |
High-Throughput Affinity Measurements of Transcription Factor and DNA Mutations Reveal Affinity and Specificity Determinants
|
Aditham, Arjun K.
|
|
|
|
2 |
p. 112-127.e11
|
artikel
|
| 64 |
How Can Systems Biology Test Principles and Tools Using Immune Cells as a Model?
|
|
|
|
|
2 |
p. 146-148
|
artikel
|
| 65 |
How Does Large-Scale Genomic Analysis Shape Our Understanding of COVID Variants in Real Time?
|
van Dorp, Lucy
|
|
|
|
2 |
p. 109-111
|
artikel
|
| 66 |
“How Do You Know?” The Answer Lies in Methods
|
Justman, Quincey
|
|
|
|
2 |
p. 121
|
artikel
|
| 67 |
How to Understand Systems
|
Mak, H. Craig
|
|
2015
|
|
2 |
p. 99-
1 p.
|
artikel
|
| 68 |
How Will Kinetics and Thermodynamics Inform Our Future Efforts to Understand and Build Biological Systems?
|
|
|
2017
|
|
2 |
p. 144-146
|
artikel
|
| 69 |
Hunting for Cis-Regulatory Elements in Proteins
|
Gibson, Toby J.
|
|
2016
|
|
2 |
p. 68-70
3 p.
|
artikel
|
| 70 |
Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development
|
Chasman, Deborah
|
|
2019
|
|
2 |
p. 167-186.e12
|
artikel
|
| 71 |
Insights into the Mechanisms of Basal Coordination of Transcription Using a Genome-Reduced Bacterium
|
Junier, Ivan
|
|
|
|
2 |
p. 227-229
|
artikel
|
| 72 |
In Situ Peroxidase Labeling and Mass-Spectrometry Connects Alpha-Synuclein Directly to Endocytic Trafficking and mRNA Metabolism in Neurons
|
Chung, Chee Yeun
|
|
2017
|
|
2 |
p. 242-250.e4
|
artikel
|
| 73 |
Integrative Personal Omics Profiles during Periods of Weight Gain and Loss
|
Piening, Brian D.
|
|
|
|
2 |
p. 157-170.e8
|
artikel
|
| 74 |
In the Future, Data and Code Should Be FAIR
|
Justman, Quincey
|
|
2019
|
|
2 |
p. 95
|
artikel
|
| 75 |
In This Issue
|
|
|
2016
|
|
2 |
p. ix-
1 p.
|
artikel
|
| 76 |
In This Issue
|
|
|
2015
|
|
2 |
p. ix-
1 p.
|
artikel
|
| 77 |
Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity
|
Bankevich, Anton
|
|
|
|
2 |
p. 192-200.e3
|
artikel
|
| 78 |
Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data
|
Robinson, James T.
|
|
|
|
2 |
p. 256-258.e1
|
artikel
|
| 79 |
Keeping the Proportions of Protein Complex Components in Check
|
Taggart, James Christopher
|
|
|
|
2 |
p. 125-132
|
artikel
|
| 80 |
Longitudinal RNA-Seq Analysis of Vertebrate Aging Identifies Mitochondrial Complex I as a Small-Molecule-Sensitive Modifier of Lifespan
|
Baumgart, Mario
|
|
2016
|
|
2 |
p. 122-132
11 p.
|
artikel
|
| 81 |
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
|
Pandey, Prashant
|
|
|
|
2 |
p. 201-207.e4
|
artikel
|
| 82 |
Mapping combinatorial expression perturbations to growth in Escherichia coli
|
McCain, J. Scott P.
|
|
|
|
2 |
p. 106-108
|
artikel
|
| 83 |
Maximum Entropy Framework for Predictive Inference of Cell Population Heterogeneity and Responses in Signaling Networks
|
Dixit, Purushottam D.
|
|
|
|
2 |
p. 204-212.e8
|
artikel
|
| 84 |
Merged Map of the Yeast Proteome
|
Schmidt, Alexander
|
|
|
|
2 |
p. 150-152
|
artikel
|
| 85 |
Metabolic models of human gut microbiota: Advances and challenges
|
Rios Garza, Daniel
|
|
|
|
2 |
p. 109-121
|
artikel
|
| 86 |
Modeling the Future
|
Mak, H. Craig
|
|
2016
|
|
2 |
p. 109-
1 p.
|
artikel
|
| 87 |
Molecular and Functional Networks Linked to Sarcopenia Prevention by Caloric Restriction in Rhesus Monkeys
|
Rhoads, Timothy W.
|
|
|
|
2 |
p. 156-168.e5
|
artikel
|
| 88 |
Molecular Time Sharing through Dynamic Pulsing in Single Cells
|
Park, Jin
|
|
|
|
2 |
p. 216-229.e15
|
artikel
|
| 89 |
Navigating the Cancer Transcriptome by Decoding Divergent Oncogenic States
|
Amin, Samirkumar B.
|
|
2017
|
|
2 |
p. 90-92
3 p.
|
artikel
|
| 90 |
Network Architecture Predisposes an Enzyme to Either Pharmacologic or Genetic Targeting
|
Jensen, Karin J.
|
|
2016
|
|
2 |
p. 112-121
10 p.
|
artikel
|
| 91 |
Optimal Regulatory Circuit Topologies for Fold-Change Detection
|
Adler, Miri
|
|
2017
|
|
2 |
p. 171-181.e8
|
artikel
|
| 92 |
Overdosage of Balanced Protein Complexes Reduces Proliferation Rate in Aneuploid Cells
|
Chen, Ying
|
|
2019
|
|
2 |
p. 129-142.e5
|
artikel
|
| 93 |
Parallelization and High-Performance Computing Enables Automated Statistical Inference of Multi-scale Models
|
Jagiella, Nick
|
|
2017
|
|
2 |
p. 194-206.e9
|
artikel
|
| 94 |
Perfect and Near-Perfect Adaptation in Cell Signaling
|
Ferrell Jr., James E.
|
|
2016
|
|
2 |
p. 62-67
6 p.
|
artikel
|
| 95 |
Pharmacoproteomics Identifies Kinase Pathways that Drive the Epithelial-Mesenchymal Transition and Drug Resistance in Hepatocellular Carcinoma
|
Golkowski, Martin
|
|
|
|
2 |
p. 196-207.e7
|
artikel
|
| 96 |
Phylogenetic Profiling for Probing the Modular Architecture of the Human Genome
|
Dey, Gautam
|
|
2015
|
|
2 |
p. 106-115
10 p.
|
artikel
|
| 97 |
Pitfalls of genotyping microbial communities with rapidly growing genome collections
|
Zhao, Chunyu
|
|
|
|
2 |
p. 160-176.e3
|
artikel
|
| 98 |
Positive Gradients
|
Mak, Craig
|
|
2015
|
|
2 |
p. 174-
1 p.
|
artikel
|
| 99 |
Pre-established Chromatin Interactions Mediate the Genomic Response to Glucocorticoids
|
D'Ippolito, Anthony M.
|
|
|
|
2 |
p. 146-160.e7
|
artikel
|
| 100 |
Principles of Systems Biology, No. 2
|
|
|
2016
|
|
2 |
p. 60-61
2 p.
|
artikel
|
| 101 |
Principles of Systems Biology, No. 20
|
|
|
2017
|
|
2 |
p. 88-89
2 p.
|
artikel
|
| 102 |
Principles of Systems Biology, No. 8
|
|
|
2016
|
|
2 |
p. 110-113
4 p.
|
artikel
|
| 103 |
Principles of Systems Biology, No. 14
|
|
|
2017
|
|
2 |
p. 140-143
|
artikel
|
| 104 |
Principles of Systems Biology, No. 26
|
|
|
|
|
2 |
p. 143-145
|
artikel
|
| 105 |
Principles of Systems Biology, No. 31
|
Cho, Hyunghoon
|
|
|
|
2 |
p. 133-135
|
artikel
|
| 106 |
Privacy-preserving genotype imputation with fully homomorphic encryption
|
Gürsoy, Gamze
|
|
|
|
2 |
p. 173-182.e3
|
artikel
|
| 107 |
Protein Networks in Alzheimer’s Disease
|
Carlsen, Eva Meier
|
|
2017
|
|
2 |
p. 153-155
|
artikel
|
| 108 |
Pulse-Chase Proteomics of the App Knockin Mouse Models of Alzheimer’s Disease Reveals that Synaptic Dysfunction Originates in Presynaptic Terminals
|
Hark, Timothy J.
|
|
|
|
2 |
p. 141-158.e9
|
artikel
|
| 109 |
Quantification of Uncertainty in Peptide-MHC Binding Prediction Improves High-Affinity Peptide Selection for Therapeutic Design
|
Zeng, Haoyang
|
|
2019
|
|
2 |
p. 159-166.e3
|
artikel
|
| 110 |
Quantifying Drug Combination Synergy along Potency and Efficacy Axes
|
Meyer, Christian T.
|
|
2019
|
|
2 |
p. 97-108.e16
|
artikel
|
| 111 |
Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome
|
Wang, Tina
|
|
|
|
2 |
p. 176-185.e6
|
artikel
|
| 112 |
Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH
|
Torre, Eduardo
|
|
|
|
2 |
p. 171-179.e5
|
artikel
|
| 113 |
RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles
|
Bravi, Barbara
|
|
|
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2 |
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